Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0022090 | OGI:03047690 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:18871822-18875576 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ggggatcgggaggacaagtcacgatttgcccccaaattcgcgatccccccttcttctccggctcagattccggcgagccctcgcccccgacccccaaattggccgcggatccgagcccccctcgccgccggcttccgatcggtacaggtttcccctcccctcgctgtctcaatcggctcttagggttagggctagggtttgtgctggtcatggctgtgatctgatcctggtttgcctcgattcgatctgggaggtgtcccaggctcgcgttatggttagtgttcttgccgattacgatgctattgtagccttccgaggtggtgccccccggggggtgttgctgacgtcgctgtttgaccggttgtccgctgccagggaatagtaagaaaaagcggggaagaagttagaaagagaggactgttattttaaattgactcatgctacagtctgctagaaaaaaaaatgtaactgaataaataggaatttatgctattctgactgaatgttattttcctaagaatatgtggaatatggttttaatgatagaaataatgtagaatttatggaaatattagtcactgttgctagatggtggtgaaatgcatcaaaccaattagatgccaacacattatctatgcttgagaaagaaatttagcatctgcttagatcgtggtagctagatagaaaattacatacacttgagggacatgattgtacctctttagtttgcatttagaatttgcgcacgtgaattcagtttatgtgaccattgatacatcccacagtggtaatacgaatagtttcaccattaagtagtcatctctttagattacctagtcatataaatgatgtgactacattcttagatccattatcattaggtcaaaatgataatcatggacagttttgttaaactgtacctggatcaaggcaaggagttaaacatatatgaagtagaagagcctttggcctttgttcctaacatatggatcatgatatgaaatgtttaacacagctaatgagcatggaatgtttcagtcgagtgttgagctactgcagtgtactatagtattgattgggaaacatttaatgatccggtagtgcatcccgttaaaattctctgcattagcaccactgtgtgcttctcttttatgctttctacgtcaataataattcgcaagttagttggcagttttgaggttaacttattctttataaatatctaataattttccttttattttttggcaggatagtatggtgttttcacacaacaaaaattccaaccagtttgaccctctttcttatgttaacctgagcggactagatgctgacagtcaatctgtttcatttactgacatgaactcaagagatgctccttcaaattcacatgttacaggtaggccttccattctcggaagtaaagaagcttcctattttttggttttctcatttttatttgtttcagatgttggaaaggagaatatgttgaataacccagaggaatcaaagatagcaagcactggtctgaagcctggttctccaatttctcctgagaacttcagtttttcttctctcccaggcagcagttgtcatttgtctacgctggatcatggcaagcgacctctttctgatgtcaggccattccaggttgcttgtaagcgtccgaagcaaatagacgaaaatacctggtcaacgagcacgtttgagacatccttttcaggtttgtattttttcttgttaaaatatctgctgtgaataatacgcaagagatatgtatcagttgattatgattgttggtttcagatttagctgatgagaccagagagccagattacatctatcataatagtggtatctcagcctgcaatactagttccagcatcccttactctaatctcgagcaattaattggagaggagaacttatacttacctgattgggtgactactttccctggttatactggagatttttggccagcacctgtggctgatcaggttgatgacattgactctcctatccatgaccacctcccaagaaaagctgtggcaattggacctgaccaccaggcagacattccagaatggaggcctaggatttcgatgaccgtgccctacggttctggttcttgtgctgatctgtcatacagttctgtttccacttcagggtctgctcccagggatgaggacagtgaaagtgataagtggatcaagcactgtgtcattgaaatgccatcctcatgttctgttgcttgggttggagaccatggaagagattgtgggtgcagtgatgagggttccattagatgtgtaagacgacatgttttggaatccagagaaaacctcaaaagaatatttggagaggacaaatttcgtgagttaggtctttgtgaaatgggagaagatattgctcagagatggacagatgaggaggaaagtctcttttatagagttgtttactctaatcctccttccttgggaaagaacttttggcattttctcccacgagctttgcctggtaaaactagcatggagcttgtcagctactatttcaatgtcttcatgcttcgtaagagggctcagcaaaacagatcggagccattgcacgtggacagtgatgatgatgaggttcctgatgagccttctgtaacagaggatgaggattctgcagttgagtccccagcacatgattattacgtgaacaatcccatgtccccagagtctgaagactccttccatgagaaggtagctgatagtttatctgggctcagagatggaccaagccagaagcctctgggatccaacacagataatcctggaggtgatgccgacgtccaagacgagtcatgcacatcatttgaggaccataatggagcgcatggatctaatggtgttcaatgtgctgagtttcacatgatgctgccaaatgctgctctagaccactacagtgaccgaggtgcgtgcatgtagcggatgccaggactcatgagcatataaacataggttattagatgttgacatcatgacagagcctctgaagatatggctgatgagggagataaagatgatttgtatattggggttgtcaattgtcaatgctttgttgagaatgttgtgatgaacagtatgacagcaatacaaataaagtggatggccttggcgtttgccaaatttcgaacgccgagatggttttgatctttgctgaagttttgaaatttgaggggactgcacagccaaaaaagttaaagaccaagtcaagagttctgcattgagaacagctgccttgccttgggaagtctgttcctcaaaatcctccaacctgtcgtctgtcttggtgatgatatggtcgccagaagactcgacgggagcgatctgtatagtggtcaagtagctcagtatttttcaaagccattttgtaaagtagcatttggggaccaaactgagcttttgtgcgacgtcgtcttatattcattcattgtgtactcttgtcatcttttgctcgtatgtgtacaacctattgcattgtgtagttggagttggagagcttctagttaacccttctttttactgcagaaaatgtcgtactcatatagttgtatcaattctgacctaaggcatttgagttgtaagcagtgaatagggtaagtgatctgaatgggagcattacagacaaggaaaacgaagaaaccagatataatttctgaagcaattgctgtgcattggatcaaaccagtaaaactcagcagaatttcc
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| CDS seq | atggtgttttcacacaacaaaaattccaaccagtttgaccctctttcttatgttaacctgagcggactagatgctgacagtcaatctgtttcatttactgacatgaactcaagagatgctccttcaaattcacatgttacagatgttggaaaggagaatatgttgaataacccagaggaatcaaagatagcaagcactggtctgaagcctggttctccaatttctcctgagaacttcagtttttcttctctcccaggcagcagttgtcatttgtctacgctggatcatggcaagcgacctctttctgatgtcaggccattccaggttgcttgtaagcgtccgaagcaaatagacgaaaatacctggtcaacgagcacgtttgagacatccttttcagatttagctgatgagaccagagagccagattacatctatcataatagtggtatctcagcctgcaatactagttccagcatcccttactctaatctcgagcaattaattggagaggagaacttatacttacctgattgggtgactactttccctggttatactggagatttttggccagcacctgtggctgatcaggttgatgacattgactctcctatccatgaccacctcccaagaaaagctgtggcaattggacctgaccaccaggcagacattccagaatggaggcctaggatttcgatgaccgtgccctacggttctggttcttgtgctgatctgtcatacagttctgtttccacttcagggtctgctcccagggatgaggacagtgaaagtgataagtggatcaagcactgtgtcattgaaatgccatcctcatgttctgttgcttgggttggagaccatggaagagattgtgggtgcagtgatgagggttccattagatgtgtaagacgacatgttttggaatccagagaaaacctcaaaagaatatttggagaggacaaatttcgtgagttaggtctttgtgaaatgggagaagatattgctcagagatggacagatgaggaggaaagtctcttttatagagttgtttactctaatcctccttccttgggaaagaacttttggcattttctcccacgagctttgcctggtaaaactagcatggagcttgtcagctactatttcaatgtcttcatgcttcgtaagagggctcagcaaaacagatcggagccattgcacgtggacagtgatgatgatgaggttcctgatgagccttctgtaacagaggatgaggattctgcagttgagtccccagcacatgattattacgtgaacaatcccatgtccccagagtctgaagactccttccatgagaaggtagctgatagtttatctgggctcagagatggaccaagccagaagcctctgggatccaacacagataatcctggaggtgatgccgacgtccaagacgagtcatgcacatcatttgaggaccataatggagcgcatggatctaatggtgttcaatgtgctgagtttcacatgatgctgccaaatgctgctctagaccactacagtgaccgaggtgcgtgcatgtag
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| Protein seq | MVFSHNKNSNQFDPLSYVNLSGLDADSQSVSFTDMNSRDAPSNSHVTDVGKENMLNNPEESKIASTGLKPGSPISPENFSFSSLPGSSCHLSTLDHGKRPLSDVRPFQVACKRPKQIDENTWSTSTFETSFSDLADETREPDYIYHNSGISACNTSSSIPYSNLEQLIGEENLYLPDWVTTFPGYTGDFWPAPVADQVDDIDSPIHDHLPRKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAPRDEDSESDKWIKHCVIEMPSSCSVAWVGDHGRDCGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELGLCEMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNRSEPLHVDSDDDEVPDEPSVTEDEDSAVESPAHDYYVNNPMSPESEDSFHEKVADSLSGLRDGPSQKPLGSNTDNPGGDADVQDESCTSFEDHNGAHGSNGVQCAEFHMMLPNAALDHYSDRGACM |
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| Function | AT-rich interactive domain-containing protein 2 [UniProtKB/Swiss-Prot:Q9LDD4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0022090 | OsLima_03g0022090.01 | Chr03 | 18871822 | 18875576 | + | NAM | ||
| CDS seq | atggtgttttcacacaacaaaaattccaaccagtttgaccctctttcttatgttaacctgagcggactagatgctgacagtcaatctgtttcatttactgacatgaactcaagagatgctccttcaaattcacatgttacagatgttggaaaggagaatatgttgaataacccagaggaatcaaagatagcaagcactggtctgaagcctggttctccaatttctcctgagaacttcagtttttcttctctcccaggcagcagttgtcatttgtctacgctggatcatggcaagcgacctctttctgatgtcaggccattccaggttgcttgtaagcgtccgaagcaaatagacgaaaatacctggtcaacgagcacgtttgagacatccttttcagatttagctgatgagaccagagagccagattacatctatcataatagtggtatctcagcctgcaatactagttccagcatcccttactctaatctcgagcaattaattggagaggagaacttatacttacctgattgggtgactactttccctggttatactggagatttttggccagcacctgtggctgatcaggttgatgacattgactctcctatccatgaccacctcccaagaaaagctgtggcaattggacctgaccaccaggcagacattccagaatggaggcctaggatttcgatgaccgtgccctacggttctggttcttgtgctgatctgtcatacagttctgtttccacttcagggtctgctcccagggatgaggacagtgaaagtgataagtggatcaagcactgtgtcattgaaatgccatcctcatgttctgttgcttgggttggagaccatggaagagattgtgggtgcagtgatgagggttccattagatgtgtaagacgacatgttttggaatccagagaaaacctcaaaagaatatttggagaggacaaatttcgtgagttaggtctttgtgaaatgggagaagatattgctcagagatggacagatgaggaggaaagtctcttttatagagttgtttactctaatcctccttccttgggaaagaacttttggcattttctcccacgagctttgcctggtaaaactagcatggagcttgtcagctactatttcaatgtcttcatgcttcgtaagagggctcagcaaaacagatcggagccattgcacgtggacagtgatgatgatgaggttcctgatgagccttctgtaacagaggatgaggattctgcagttgagtccccagcacatgattattacgtgaacaatcccatgtccccagagtctgaagactccttccatgagaaggtagctgatagtttatctgggctcagagatggaccaagccagaagcctctgggatccaacacagataatcctggaggtgatgccgacgtccaagacgagtcatgcacatcatttgaggaccataatggagcgcatggatctaatggtgttcaatgtgctgagtttcacatgatgctgccaaatgctgctctagaccactacagtgaccgaggtgcgtgcatgtag
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| Protein seq | MVFSHNKNSNQFDPLSYVNLSGLDADSQSVSFTDMNSRDAPSNSHVTDVGKENMLNNPEESKIASTGLKPGSPISPENFSFSSLPGSSCHLSTLDHGKRPLSDVRPFQVACKRPKQIDENTWSTSTFETSFSDLADETREPDYIYHNSGISACNTSSSIPYSNLEQLIGEENLYLPDWVTTFPGYTGDFWPAPVADQVDDIDSPIHDHLPRKAVAIGPDHQADIPEWRPRISMTVPYGSGSCADLSYSSVSTSGSAPRDEDSESDKWIKHCVIEMPSSCSVAWVGDHGRDCGCSDEGSIRCVRRHVLESRENLKRIFGEDKFRELGLCEMGEDIAQRWTDEEESLFYRVVYSNPPSLGKNFWHFLPRALPGKTSMELVSYYFNVFMLRKRAQQNRSEPLHVDSDDDEVPDEPSVTEDEDSAVESPAHDYYVNNPMSPESEDSFHEKVADSLSGLRDGPSQKPLGSNTDNPGGDADVQDESCTSFEDHNGAHGSNGVQCAEFHMMLPNAALDHYSDRGACM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.722934 | 0.797521 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0425800 | RBH | 5.374352 | 4.100485 | 14.178388 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g31230 | RBH | 3.611423 | 2.832484 | 3.564774 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0425800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0022330 | RBH | 2.507115 | 30.109312 | 14.888186 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0022190 | RBH | 1.066896 | 7.497867 | 6.852679 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0022250 | RBH | 4.852634 | 19.825201 | 22.563986 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0022240 | RBH | 0.919934 | 0.577538 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0022050 | RBH | 18.332670 | 25.570028 | 36.227829 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0293200 | RBH | 20.360171 | 50.1554435 | 40.0574895 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0021790 | RBH | 0.578188 | 1.800501 | 3.216849 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0296500 | RBH | 24.047554 | 37.3926525 | 22.175293 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0022080 | RBH | 2.082577 | 35.029297 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0022190 | RBH | 10.532192 | 37.668999 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0022030 | RBH | 3.129082 | 3.208613 | 2.679026 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0021870 | RBH | 1.104985 | 15.051397 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G021860 | RBH | 1.977514 | 5.310959 | 7.072824 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0021770 | RBH | 3.997072 | 39.164288 | 21.236134 |
