Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0020790 | OGI:03043960 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:17245789-17253554 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaagccgactccactcatctacctatattagtaaacccgaacaatagtcaagcagacaatgagaaccaattggcaaacttgatgtgagctccagtagtagctcagaagctgaaacccccagaggtcagtaactctttcctgctttctacacttgttcccttttgattcagcttctgtgatgcttatattattattgtttaaattttagcaacccaaaactcatgaaaagaaaaacagaaggcctttagtcatttattgatctttgttacctttttgtatttgtatttctaagaattgattattcattgccatgttcttgtagtaaagtacatatggctgcctttttatcatgacttgacctgataattcaaaggttccaacaatcttccataccaagtctgatgaacgcccaaatcatacgaatccagagattttgtgagaagcaagcaacatataactaaattactagtcagactagcgagggattgcctattcaatttatgcagctttgcaaatacaacgaatccttcagttccaaccatctcgagagaaaagcctacagacataactaaaccagttccatggactggagggaaccagctaacatctgtgaacagaaactaccaacaaaacggccatatccttcactcagtgacaccagcagtgagggatcatgcaatcggtacccccgaaatcattatgatgatacaccaatgagaattaagtttatttgtaattttggtggtagattcttaccaaggccgagtgatggtcagctccggtatgtcggaggtgagaggcacttgattaaaattagccgggacatttcatggaaagagctcatctgcaagacatcaaagttaataaggcgagctcatatgatcaaataccacctaccaggggagccaatgaacatgctcatttccatcacctgtgatgatgacctccggaatatgattgatgagtgcattgttctagaacgaaccaaagtattgttgaccgtttacctctttgctgataatgatgatgagcgccatgtgcatttcgtattaggaagctcatccagtacagacaaggaagcgcagttcattgctcttgtcaatgggctcgtcagaccaggtgaggaattgaaaaagcagaggcttagaaacaccccagccaatgacctagatcaacttatgtttgacatcaatgaagaagggttgttagccaggacagacaaagcttcaccaaacgtccaaagtaagctctcaccaagtaccgtcaaggtaccgctgaagacatcaagggagcagctggagaacatgcctccaagttcccaactagctgtgaccaaccaagattacaaggcaccaagaaatgaagataacccactgtgtaccgccagaaagacaaataatgctcaccttggctcctctgtaccttctgaatccacgtgcataggtaaggtggaagctggggctcatgctgtctccaggcatcatccaggacagagaaatactgctacaaacatgaccagaaagagcaaccaagcaacagaagatcaggtaaaaggatcaccaagaaaacagcttccgatacaagtagacagcagaggtgtgaatgtagtgtcatcaaattcaaacaacaatagcctaacgatgcatatacgtctacctgtttatgaaaaggttgcatccttatcagggggttcagagaaaacagtcaaccagccaacctcccatgataacaagatgaaattaaaaacatatagcacccaagaagaagctgtgtctcactcagcatcccataataagacggagatgcataaacgtagtcttgactttcctactccaccacgatgccatgatgatacgtacaacagtacgaacagtacaaacctgcatattctggagaagtcaattacaactaacaacaagcagaagcaacagcctgcagtcatgtgcattgacattttgaagaaaaaccatcctcctgaaccgaccaaaggtgaaacagtactttcctgttcttatctatcttcagacaagacaactgagctgcagaaaaatattctagtcagatcttcaagtgagcgacaagaacgacccaacagtccaaaaccagatgaacatttatcaacaacagcccgttctcgatcagttggtgcagatagaattagccctcagatcagaactccatcgcaagaatctaaagataatgttgcaccatttatcgaagagtctgaggtacatctataatctagtttcttgttacaattgaaaagttataatttactgtacaaattctgaacaatcttttggcaggcatgtgagaccaagaacagtgaggaagctttatctgcaaacacagtaatggggagagaacttataagtaatgtccaggttgtagtgaaatccttatctaatgctacattcagtcacaaaaaattgaccaatgaaattctactataatatatcagaaaatgctatactccacaagactagaagtgtaatattatgcaaagcatactttataacggacttgcacatcattttatatatatccaagttttgcgtcgtaaacattagctttagtttaaaaaaaacacggccagcattcttgggcgttataaaatatacaatgtttgggacaagatttggtcaacttttaaaaattttgaccatcaataatttttgaagttcttaggttacaaacaaaaaaattggtgtgtagatttgcctcgaaaagtaccatcataatatcataagcttattagattttataaacttactttaatataacatcgaaggtcaggattttaaaattttgaccaaatcgtatccaaaatgtcatataattttggcagtggatgccatacaaatgacacatattcccaaatttctaccattaaatgggaactagagtttaaaaaaacttattcctacagtggatgtcatacaaatgacaggtaataaacaatggggaccttgaagatctccgtgagataggctctggttcatttgggactgttttccatggaagatggaaggggacagatgttgccattaagcgcataaagaacagctgttttatgtacccatcgtctcaggcagataaactggtaagcctatatgaactcacccagatgatttgaagttgcaatagctagttagctactgaggtcttgtactccagtaatccaacttttaaaagatcctcatgattgtgcatgcctatcacatgtagtcatattaattttatcttactctttgaattgaaaaaagaaataaaactatagatcaacaatcccaccaatatgtcctataaaccaactacattggccaatatcggacccagaccagggagctcctcaccaggtgagaacagctggtatggaatacgaccaagagctgcagtggccaactggttccagaaataagacacctctatggctctgaaatcctagtatagaaattcagtattaactaaaatttagcactataaaaaaaatgtgctgcaaatattactgtgttgcccatcatgtattgtcatgcagatcacagaattttggagagaggctgctataatctcaaaacttcaccatccaaatgttctagcactttatggtattgtaaataatggacctgggggaacattagctactgtaacagaattcatgatcaacggatccctcaagaaagtcctccttcacaaaaacaaatatcttgattggcacaagcgcataatggttgcaaaggatgcagccattggaatggaatacttgcactccaaggacattgtccactttgatctgaaatgtgataacttgttggtgaatattaaggatccctctcgtcccatatgcaaggtatgttcacttaacgttacagtagcatagattatgacaaaattatcttgtacatgcaaatgtgtggataaatatgtttcacaccttagatttgttatataaactgaaggatattgtgtataaaactgggggccgttacagacaaataatggtgcaacaggttgctgattttggtttgtcgaagatgaaacaagcgactcttgtttctggtggaatgagaggaactcttccttggatggctccagaattgctgacaatgagtggcacaaaagtatccgaaaaagtaaagttctgatttccaatttgcatatttgcatgtgaaaaagggaaagatagacagtacctgttgtgtttttataaattcgaaatttggagatcccctggaaaaacagctttatagcgttaatattatcattattagttaaacaaatggatgttgtagagtttgacatgcaccccccatagccgaaggagaaagatttcacatatcaaactgacagtttattacttgatgttattagatagcatatatgtaacaaaagaaaggtgggctttacattttataaataaatgagatactggtgtacttggcatttactcatcagaccaccaaaccgtatcggtatgatcaagatatgtgatgtgctcactagcagttatctattacgatcaaccaccactgatttctgccctataaaagacaacgactgacttttgtcctaaaaaagcaaccactgacttctaacaagaactaaactactgaaggatataatttttttttcgccgggacggcaaaggaatgtcggctgtagtatattaagaaaaggagagaatgtacagtgtagcgaggctttgcagcccgcgcctatttactgaaggatataatcattagcggttcatgaaaacataggagcacagaaactaagccatacttattttctttttcaaagacaatgtaggggagggccccacagttagattttattaaaagatattatgtacaaagattacaacagataattcacgcattcatcaaagaattaaggtgtgccatgaaaaagagaaccgcactgtctttcttggaattttatattttctagcctgaaacacatggtttttatgctaatacagattgatgtatattcatttggcattgtgatgtgggaaattctgactggtgaggatccatatgacggcatgcactatggaggagtcataggtatgcatttaatacagatactctggaaaaaaaataaactcgtttgctgagttgcatgttctgttgctttgatcctaaactcgataattaaccctctaggtctgcaaaattgataataaggcaagacaggacaaacccaggcttagactagtgattaattccttgtgtcccaaaacacatattacagtattagcaaaattcctttgcctcactgacaagtcacaaccatagctcagtgaaataaccgattgtcacataaaggaagaggtgaacattcagttgcatataagaaattcaccttaaattagtaattatagtgatgatagtgcaaaccaattttgttttttaagttttctggaaaaaaaaaagtcaagtcaaaatttgagaacattcttgcaaagtaaaatctgtccaaagatatacaagagtttgatttatatccataataatcaattatccattcatctcacatgataatgtcaaaaataaaataagttatactccctctggtcataaatatttggcgtttataactagatttggtttgtcgtgtgtgaggtaggggcactcacacaagtggtgacctaaatgtagtttgttatgtcatcgtacaagggttacattttattcaactccaaagtttgaaatattgtatatgcattcactgtctacagagatcatgtactccctccgtctcaatataagtgcaacctagtacagatgtggcatatcctaagactacgaatcagaacagctatctgtctagattcatagtcctaggatatgtcacatctattaggttgcgcttatatagagaccgagggagtagttttcaggctgtcactaaagaagccatccaagtattcaaaatatacagcaactatagatgttaaatttgaacatcttcctatatgtatcatcagaaatgataaacaggcaataaaaccaggttcacaaaatcagaagtcaccactggtaaccaagattaggtgagatatcagtttactttcgagtaaattgcacccacggtacaacaacttggcaggtgggtgcgatatagcgcaagaacttgagaatcgaacgtccgagtgcaacaacttaacaagtgggtgcgttctagtacaagaacttgacaatttagtattttggtgaatcaatttggctaagcatatgctaggtgaggtttttcacgatgtcaatatgccaatacacagtaatcctatggatattaccttataatattgaatttaatctttaagaattatattgcacatacaatttacattcagttacctttaagaattttttgttttcttcaccttctcaaatattaaccgaaatataataatttctacatccagtttaattgactttcagttattagttattagagttattagttattaggataaaaatataaatatgtttatacgaatccacgctagtatattgtcaagtacttaaaattttgaatttatataaaaaaatgctccaaataattaagttgtcacaacttcttaatttattgtatcaaaatcgtacctaccttgcaagttgttgcatttatacgatcacttataaagttcttatactaaattacaccttcttgccaagttgttgcactagaacgctcatttttcaagttattacaccaaattgcacccacctgccaagttgttgcaccgtgggtgcaatttactctttaatttccatgcttgtcctagcttgttagagaccattccaggtgattgtgtctgaacagtggctaaattaggtagatcctggctgaatttatcctgtttgcaagcaatccatgatttactaaggctgtgtacggcaagtcattttcccaactaccactccctcattttccacgtgcatgcttaccaaattgctaaatggtgcattttttgcaaaaaaaaaaaaaaaaggatagaaaagttgctttaaaagatcatattaatccatttttcaagtttattttagctaaagcttaattaatcatacactaatcgattgctccgttttgtgtgtggggaggtggagttcctaacctccatctccgaacacagcctaacagagtttagagactagcaattcttagccagtttttgaaaaccacttcactgagggaggtcactgcattctgcaaagttgattgagacattataatgctctgcatataattttcattaattatagcgtagaaatgcaagattcatatgctaataaaatggcataccaaaaaatgcagggggcattttgagtaacacactgaggccactagtgccaacttcatgtaacctggaatggaggaaactgatggagcagtgctggtcaactgaacctgagcgacgaccttccttcgctgaagttgcaacccgtcttcgctccatgctagaagcaagccaaagtgtgactctgagagttaattagcatcactctctgtctgtatatctatcatttaggtgcatgctacagaattgcaaatatgaatgtttcttcttatattgagtatcgcttataagtatgcaattgtataactcctgcagaccaaagctgactatcgggtgccccctgtcttgtattgtacatgcatgtatccacagcatgaaactgtaggggaaaaagtaaacagaagctcccttatctatgtgaagatctttacactttagtggggatactttaaagttatcc
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| CDS seq | atggactggagggaaccagctaacatctgtgaacagaaactaccaacaaaacggccatatccttcactcagtgacaccagcagtgagggatcatgcaatcggtacccccgaaatcattatgatgatacaccaatgagaattaagtttatttgtaattttggtggtagattcttaccaaggccgagtgatggtcagctccggtatgtcggaggtgagaggcacttgattaaaattagccgggacatttcatggaaagagctcatctgcaagacatcaaagttaataaggcgagctcatatgatcaaataccacctaccaggggagccaatgaacatgctcatttccatcacctgtgatgatgacctccggaatatgattgatgagtgcattgttctagaacgaaccaaagtattgttgaccgtttacctctttgctgataatgatgatgagcgccatgtgcatttcgtattaggaagctcatccagtacagacaaggaagcgcagttcattgctcttgtcaatgggctcgtcagaccaggtgaggaattgaaaaagcagaggcttagaaacaccccagccaatgacctagatcaacttatgtttgacatcaatgaagaagggttgttagccaggacagacaaagcttcaccaaacgtccaaagtaagctctcaccaagtaccgtcaaggtaccgctgaagacatcaagggagcagctggagaacatgcctccaagttcccaactagctgtgaccaaccaagattacaaggcaccaagaaatgaagataacccactgtgtaccgccagaaagacaaataatgctcaccttggctcctctgtaccttctgaatccacgtgcataggtaaggtggaagctggggctcatgctgtctccaggcatcatccaggacagagaaatactgctacaaacatgaccagaaagagcaaccaagcaacagaagatcaggtaaaaggatcaccaagaaaacagcttccgatacaagtagacagcagaggtgtgaatgtagtgtcatcaaattcaaacaacaatagcctaacgatgcatatacgtctacctgtttatgaaaaggttgcatccttatcagggggttcagagaaaacagtcaaccagccaacctcccatgataacaagatgaaattaaaaacatatagcacccaagaagaagctgtgtctcactcagcatcccataataagacggagatgcataaacgtagtcttgactttcctactccaccacgatgccatgatgatacgtacaacagtacgaacagtacaaacctgcatattctggagaagtcaattacaactaacaacaagcagaagcaacagcctgcagtcatgtgcattgacattttgaagaaaaaccatcctcctgaaccgaccaaaggtgaaacagtactttcctgttcttatctatcttcagacaagacaactgagctgcagaaaaatattctagtcagatcttcaagtgagcgacaagaacgacccaacagtccaaaaccagatgaacatttatcaacaacagcccgttctcgatcagttggtgcagatagaattagccctcagatcagaactccatcgcaagaatctaaagataatgttgcaccatttatcgaagagtctgaggcatgtgagaccaagaacagtgaggaagctttatctgcaaacacagtaatggggagagaacttataagtaatgtccaggtaataaacaatggggaccttgaagatctccgtgagataggctctggttcatttgggactgttttccatggaagatggaaggggacagatgttgccattaagcgcataaagaacagctgttttatgtacccatcgtctcaggcagataaactgatcacagaattttggagagaggctgctataatctcaaaacttcaccatccaaatgttctagcactttatggtattgtaaataatggacctgggggaacattagctactgtaacagaattcatgatcaacggatccctcaagaaagtcctccttcacaaaaacaaatatcttgattggcacaagcgcataatggttgcaaaggatgcagccattggaatggaatacttgcactccaaggacattgtccactttgatctgaaatgtgataacttgttggtgaatattaaggatccctctcgtcccatatgcaaggttgctgattttggtttgtcgaagatgaaacaagcgactcttgtttctggtggaatgagaggaactcttccttggatggctccagaattgctgacaatgagtggcacaaaagtatccgaaaaaattgatgtatattcatttggcattgtgatgtgggaaattctgactggtgaggatccatatgacggcatgcactatggaggagtcatagggggcattttgagtaacacactgaggccactagtgccaacttcatgtaacctggaatggaggaaactgatggagcagtgctggtcaactgaacctgagcgacgaccttccttcgctgaagttgcaacccgtcttcgctccatgctagaagcaagccaaagtgtgactctgagagttaattag
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| Protein seq | MDWREPANICEQKLPTKRPYPSLSDTSSEGSCNRYPRNHYDDTPMRIKFICNFGGRFLPRPSDGQLRYVGGERHLIKISRDISWKELICKTSKLIRRAHMIKYHLPGEPMNMLISITCDDDLRNMIDECIVLERTKVLLTVYLFADNDDERHVHFVLGSSSSTDKEAQFIALVNGLVRPGEELKKQRLRNTPANDLDQLMFDINEEGLLARTDKASPNVQSKLSPSTVKVPLKTSREQLENMPPSSQLAVTNQDYKAPRNEDNPLCTARKTNNAHLGSSVPSESTCIGKVEAGAHAVSRHHPGQRNTATNMTRKSNQATEDQVKGSPRKQLPIQVDSRGVNVVSSNSNNNSLTMHIRLPVYEKVASLSGGSEKTVNQPTSHDNKMKLKTYSTQEEAVSHSASHNKTEMHKRSLDFPTPPRCHDDTYNSTNSTNLHILEKSITTNNKQKQQPAVMCIDILKKNHPPEPTKGETVLSCSYLSSDKTTELQKNILVRSSSERQERPNSPKPDEHLSTTARSRSVGADRISPQIRTPSQESKDNVAPFIEESEACETKNSEEALSANTVMGRELISNVQVINNGDLEDLREIGSGSFGTVFHGRWKGTDVAIKRIKNSCFMYPSSQADKLITEFWREAAIISKLHHPNVLALYGIVNNGPGGTLATVTEFMINGSLKKVLLHKNKYLDWHKRIMVAKDAAIGMEYLHSKDIVHFDLKCDNLLVNIKDPSRPICKVADFGLSKMKQATLVSGGMRGTLPWMAPELLTMSGTKVSEKIDVYSFGIVMWEILTGEDPYDGMHYGGVIGGILSNTLRPLVPTSCNLEWRKLMEQCWSTEPERRPSFAEVATRLRSMLEASQSVTLRVN |
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| Function | Serine/threonine-protein kinase CTR1 [UniProtKB/Swiss-Prot:Q05609] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0020790 | OsLima_03g0020790.01 | Chr03 | 17245789 | 17253554 | + | NAM | ||
| CDS seq | atggactggagggaaccagctaacatctgtgaacagaaactaccaacaaaacggccatatccttcactcagtgacaccagcagtgagggatcatgcaatcggtacccccgaaatcattatgatgatacaccaatgagaattaagtttatttgtaattttggtggtagattcttaccaaggccgagtgatggtcagctccggtatgtcggaggtgagaggcacttgattaaaattagccgggacatttcatggaaagagctcatctgcaagacatcaaagttaataaggcgagctcatatgatcaaataccacctaccaggggagccaatgaacatgctcatttccatcacctgtgatgatgacctccggaatatgattgatgagtgcattgttctagaacgaaccaaagtattgttgaccgtttacctctttgctgataatgatgatgagcgccatgtgcatttcgtattaggaagctcatccagtacagacaaggaagcgcagttcattgctcttgtcaatgggctcgtcagaccaggtgaggaattgaaaaagcagaggcttagaaacaccccagccaatgacctagatcaacttatgtttgacatcaatgaagaagggttgttagccaggacagacaaagcttcaccaaacgtccaaagtaagctctcaccaagtaccgtcaaggtaccgctgaagacatcaagggagcagctggagaacatgcctccaagttcccaactagctgtgaccaaccaagattacaaggcaccaagaaatgaagataacccactgtgtaccgccagaaagacaaataatgctcaccttggctcctctgtaccttctgaatccacgtgcataggtaaggtggaagctggggctcatgctgtctccaggcatcatccaggacagagaaatactgctacaaacatgaccagaaagagcaaccaagcaacagaagatcaggtaaaaggatcaccaagaaaacagcttccgatacaagtagacagcagaggtgtgaatgtagtgtcatcaaattcaaacaacaatagcctaacgatgcatatacgtctacctgtttatgaaaaggttgcatccttatcagggggttcagagaaaacagtcaaccagccaacctcccatgataacaagatgaaattaaaaacatatagcacccaagaagaagctgtgtctcactcagcatcccataataagacggagatgcataaacgtagtcttgactttcctactccaccacgatgccatgatgatacgtacaacagtacgaacagtacaaacctgcatattctggagaagtcaattacaactaacaacaagcagaagcaacagcctgcagtcatgtgcattgacattttgaagaaaaaccatcctcctgaaccgaccaaaggtgaaacagtactttcctgttcttatctatcttcagacaagacaactgagctgcagaaaaatattctagtcagatcttcaagtgagcgacaagaacgacccaacagtccaaaaccagatgaacatttatcaacaacagcccgttctcgatcagttggtgcagatagaattagccctcagatcagaactccatcgcaagaatctaaagataatgttgcaccatttatcgaagagtctgaggcatgtgagaccaagaacagtgaggaagctttatctgcaaacacagtaatggggagagaacttataagtaatgtccaggtaataaacaatggggaccttgaagatctccgtgagataggctctggttcatttgggactgttttccatggaagatggaaggggacagatgttgccattaagcgcataaagaacagctgttttatgtacccatcgtctcaggcagataaactgatcacagaattttggagagaggctgctataatctcaaaacttcaccatccaaatgttctagcactttatggtattgtaaataatggacctgggggaacattagctactgtaacagaattcatgatcaacggatccctcaagaaagtcctccttcacaaaaacaaatatcttgattggcacaagcgcataatggttgcaaaggatgcagccattggaatggaatacttgcactccaaggacattgtccactttgatctgaaatgtgataacttgttggtgaatattaaggatccctctcgtcccatatgcaaggttgctgattttggtttgtcgaagatgaaacaagcgactcttgtttctggtggaatgagaggaactcttccttggatggctccagaattgctgacaatgagtggcacaaaagtatccgaaaaaattgatgtatattcatttggcattgtgatgtgggaaattctgactggtgaggatccatatgacggcatgcactatggaggagtcatagggggcattttgagtaacacactgaggccactagtgccaacttcatgtaacctggaatggaggaaactgatggagcagtgctggtcaactgaacctgagcgacgaccttccttcgctgaagttgcaacccgtcttcgctccatgctagaagcaagccaaagtgtgactctgagagttaattag
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| Protein seq | MDWREPANICEQKLPTKRPYPSLSDTSSEGSCNRYPRNHYDDTPMRIKFICNFGGRFLPRPSDGQLRYVGGERHLIKISRDISWKELICKTSKLIRRAHMIKYHLPGEPMNMLISITCDDDLRNMIDECIVLERTKVLLTVYLFADNDDERHVHFVLGSSSSTDKEAQFIALVNGLVRPGEELKKQRLRNTPANDLDQLMFDINEEGLLARTDKASPNVQSKLSPSTVKVPLKTSREQLENMPPSSQLAVTNQDYKAPRNEDNPLCTARKTNNAHLGSSVPSESTCIGKVEAGAHAVSRHHPGQRNTATNMTRKSNQATEDQVKGSPRKQLPIQVDSRGVNVVSSNSNNNSLTMHIRLPVYEKVASLSGGSEKTVNQPTSHDNKMKLKTYSTQEEAVSHSASHNKTEMHKRSLDFPTPPRCHDDTYNSTNSTNLHILEKSITTNNKQKQQPAVMCIDILKKNHPPEPTKGETVLSCSYLSSDKTTELQKNILVRSSSERQERPNSPKPDEHLSTTARSRSVGADRISPQIRTPSQESKDNVAPFIEESEACETKNSEEALSANTVMGRELISNVQVINNGDLEDLREIGSGSFGTVFHGRWKGTDVAIKRIKNSCFMYPSSQADKLITEFWREAAIISKLHHPNVLALYGIVNNGPGGTLATVTEFMINGSLKKVLLHKNKYLDWHKRIMVAKDAAIGMEYLHSKDIVHFDLKCDNLLVNIKDPSRPICKVADFGLSKMKQATLVSGGMRGTLPWMAPELLTMSGTKVSEKIDVYSFGIVMWEILTGEDPYDGMHYGGVIGGILSNTLRPLVPTSCNLEWRKLMEQCWSTEPERRPSFAEVATRLRSMLEASQSVTLRVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0020790 | OsLima_03g0020790.02 | Chr03 | 17245789 | 17253554 | + | NAM | ||
| CDS seq | atggactggagggaaccagctaacatctgtgaacagaaactaccaacaaaacggccatatccttcactcagtgacaccagcagtgagggatcatgcaatcggtacccccgaaatcattatgatgatacaccaatgagaattaagtttatttgtaattttggtggtagattcttaccaaggccgagtgatggtcagctccggtatgtcggaggtgagaggcacttgattaaaattagccgggacatttcatggaaagagctcatctgcaagacatcaaagttaataaggcgagctcatatgatcaaataccacctaccaggggagccaatgaacatgctcatttccatcacctgtgatgatgacctccggaatatgattgatgagtgcattgttctagaacgaaccaaagtattgttgaccgtttacctctttgctgataatgatgatgagcgccatgtgcatttcgtattaggaagctcatccagtacagacaaggaagcgcagttcattgctcttgtcaatgggctcgtcagaccaggtgaggaattgaaaaagcagaggcttagaaacaccccagccaatgacctagatcaacttatgtttgacatcaatgaagaagggttgttagccaggacagacaaagcttcaccaaacgtccaaagtaagctctcaccaagtaccgtcaaggtaccgctgaagacatcaagggagcagctggagaacatgcctccaagttcccaactagctgtgaccaaccaagattacaaggcaccaagaaatgaagataacccactgtgtaccgccagaaagacaaataatgctcaccttggctcctctgtaccttctgaatccacgtgcataggtaaggtggaagctggggctcatgctgtctccaggcatcatccaggacagagaaatactgctacaaacatgaccagaaagagcaaccaagcaacagaagatcaggtaaaaggatcaccaagaaaacagcttccgatacaagtagacagcagaggtgtgaatgtagtgtcatcaaattcaaacaacaatagcctaacgatgcatatacgtctacctgtttatgaaaaggttgcatccttatcagggggttcagagaaaacagtcaaccagccaacctcccatgataacaagatgaaattaaaaacatatagcacccaagaagaagctgtgtctcactcagcatcccataataagacggagatgcataaacgtagtcttgactttcctactccaccacgatgccatgatgatacgtacaacagtacgaacagtacaaacctgcatattctggagaagtcaattacaactaacaacaagcagaagcaacagcctgcagtcatgtgcattgacattttgaagaaaaaccatcctcctgaaccgaccaaagtcagatcttcaagtgagcgacaagaacgacccaacagtccaaaaccagatgaacatttatcaacaacagcccgttctcgatcagttggtgcagatagaattagccctcagatcagaactccatcgcaagaatctaaagataatgttgcaccatttatcgaagagtctgaggcatgtgagaccaagaacagtgaggaagctttatctgcaaacacagtaatggggagagaacttataagtaatgtccaggtaataaacaatggggaccttgaagatctccgtgagataggctctggttcatttgggactgttttccatggaagatggaaggggacagatgttgccattaagcgcataaagaacagctgttttatgtacccatcgtctcaggcagataaactgatcacagaattttggagagaggctgctataatctcaaaacttcaccatccaaatgttctagcactttatggtattgtaaataatggacctgggggaacattagctactgtaacagaattcatgatcaacggatccctcaagaaagtcctccttcacaaaaacaaatatcttgattggcacaagcgcataatggttgcaaaggatgcagccattggaatggaatacttgcactccaaggacattgtccactttgatctgaaatgtgataacttgttggtgaatattaaggatccctctcgtcccatatgcaaggttgctgattttggtttgtcgaagatgaaacaagcgactcttgtttctggtggaatgagaggaactcttccttggatggctccagaattgctgacaatgagtggcacaaaagtatccgaaaaaattgatgtatattcatttggcattgtgatgtgggaaattctgactggtgaggatccatatgacggcatgcactatggaggagtcatagggggcattttgagtaacacactgaggccactagtgccaacttcatgtaacctggaatggaggaaactgatggagcagtgctggtcaactgaacctgagcgacgaccttccttcgctgaagttgcaacccgtcttcgctccatgctagaagcaagccaaagtgtgactctgagagttaattag
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| Protein seq | MDWREPANICEQKLPTKRPYPSLSDTSSEGSCNRYPRNHYDDTPMRIKFICNFGGRFLPRPSDGQLRYVGGERHLIKISRDISWKELICKTSKLIRRAHMIKYHLPGEPMNMLISITCDDDLRNMIDECIVLERTKVLLTVYLFADNDDERHVHFVLGSSSSTDKEAQFIALVNGLVRPGEELKKQRLRNTPANDLDQLMFDINEEGLLARTDKASPNVQSKLSPSTVKVPLKTSREQLENMPPSSQLAVTNQDYKAPRNEDNPLCTARKTNNAHLGSSVPSESTCIGKVEAGAHAVSRHHPGQRNTATNMTRKSNQATEDQVKGSPRKQLPIQVDSRGVNVVSSNSNNNSLTMHIRLPVYEKVASLSGGSEKTVNQPTSHDNKMKLKTYSTQEEAVSHSASHNKTEMHKRSLDFPTPPRCHDDTYNSTNSTNLHILEKSITTNNKQKQQPAVMCIDILKKNHPPEPTKVRSSSERQERPNSPKPDEHLSTTARSRSVGADRISPQIRTPSQESKDNVAPFIEESEACETKNSEEALSANTVMGRELISNVQVINNGDLEDLREIGSGSFGTVFHGRWKGTDVAIKRIKNSCFMYPSSQADKLITEFWREAAIISKLHHPNVLALYGIVNNGPGGTLATVTEFMINGSLKKVLLHKNKYLDWHKRIMVAKDAAIGMEYLHSKDIVHFDLKCDNLLVNIKDPSRPICKVADFGLSKMKQATLVSGGMRGTLPWMAPELLTMSGTKVSEKIDVYSFGIVMWEILTGEDPYDGMHYGGVIGGILSNTLRPLVPTSCNLEWRKLMEQCWSTEPERRPSFAEVATRLRSMLEASQSVTLRVN
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0020790 | OsLima_03g0020790.03 | Chr03 | 17245847 | 17253554 | + | NAM | ||
| CDS seq | atggactggagggaaccagctaacatctgtgaacagaaactaccaacaaaacggccatatccttcactcagtgacaccagcagtgagggatcatgcaatcggtacccccgaaatcattatgatgatacaccaatgagaattaagtttatttgtaattttggtggtagattcttaccaaggccgagtgatggtcagctccggtatgtcggaggtgagaggcacttgattaaaattagccgggacatttcatggaaagagctcatctgcaagacatcaaagttaataaggcgagctcatatgatcaaataccacctaccaggggagccaatgaacatgctcatttccatcacctgtgatgatgacctccggaatatgattgatgagtgcattgttctagaacgaaccaaagtattgttgaccgtttacctctttgctgataatgatgatgagcgccatgtgcatttcgtattaggaagctcatccagtacagacaaggaagcgcagttcattgctcttgtcaatgggctcgtcagaccaggtgaggaattgaaaaagcagaggcttagaaacaccccagccaatgacctagatcaacttatgtttgacatcaatgaagaagggttgttagccaggacagacaaagcttcaccaaacgtccaaagtaagctctcaccaagtaccgtcaaggtaccgctgaagacatcaagggagcagctggagaacatgcctccaagttcccaactagctgtgaccaaccaagattacaaggcaccaagaaatgaagataacccactgtgtaccgccagaaagacaaataatgctcaccttggctcctctgtaccttctgaatccacgtgcataggtaaggtggaagctggggctcatgctgtctccaggcatcatccaggacagagaaatactgctacaaacatgaccagaaagagcaaccaagcaacagaagatcaggtaaaaggatcaccaagaaaacagcttccgatacaagtagacagcagaggtgtgaatgtagtgtcatcaaattcaaacaacaatagcctaacgatgcatatacgtctacctgtttatgaaaaggttgcatccttatcagggggttcagagaaaacagtcaaccagccaacctcccatgataacaagatgaaattaaaaacatatagcacccaagaagaagctgtgtctcactcagcatcccataataagacggagatgcataaacgtagtcttgactttcctactccaccacgatgccatgatgatacgtacaacagtacgaacagtacaaacctgcatattctggagaagtcaattacaactaacaacaagcagaagcaacagcctgcagtcatgtgcattgacattttgaagaaaaaccatcctcctgaaccgaccaaaggtgaaacagtactttcctgttcttatctatcttcagacaagacaactgagctgcagaaaaatattctagtcagatcttcaagtgagcgacaagaacgacccaacagtccaaaaccagatgaacatttatcaacaacagcccgttctcgatcagttggtgcagatagaattagccctcagatcagaactccatcgcaagaatctaaagataatgttgcaccatttatcgaagagtctgaggcatgtgagaccaagaacagtgaggaagctttatctgcaaacacagtaatggggagagaacttataagtaatgtccaggtaataaacaatggggaccttgaagatctccgtgagataggctctggttcatttgggactgttttccatggaagatggaaggggacagatgttgccattaagcgcataaagaacagctgttttatgtacccatcgtctcaggcagataaactgatcacagaattttggagagaggctgctataatctcaaaacttcaccatccaaatgttctagcactttatggtattgtaaataatggacctgggggaacattagctactgtaacagaattcatgatcaacggatccctcaagaaagtcctccttcacaaaaacaaatatcttgattggcacaagcgcataatggttgcaaaggatgcagccattggaatggaatacttgcactccaaggacattgtccactttgatctgaaatgtgataacttgttggtgaatattaaggatccctctcgtcccatatgcaaggttgctgattttggtttgtcgaagatgaaacaagcgactcttgtttctggtggaatgagaggaactcttccttggatggctccagaattgctgacaatgagtggcacaaaagtatccgaaaaaattgatgtatattcatttggcattgtgatgtgggaaattctgactggtgaggatccatatgacggcatgcactatggaggagtcatagggggcattttgagtaacacactgaggccactagtgccaacttcatgtaacctggaatggaggaaactgatggagcagtgctggtcaactgaacctgagcgacgaccttccttcgctgaagttgcaacccgtcttcgctccatgctagaagcaagccaaagtgtgactctgagagttaattag
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| Protein seq | MDWREPANICEQKLPTKRPYPSLSDTSSEGSCNRYPRNHYDDTPMRIKFICNFGGRFLPRPSDGQLRYVGGERHLIKISRDISWKELICKTSKLIRRAHMIKYHLPGEPMNMLISITCDDDLRNMIDECIVLERTKVLLTVYLFADNDDERHVHFVLGSSSSTDKEAQFIALVNGLVRPGEELKKQRLRNTPANDLDQLMFDINEEGLLARTDKASPNVQSKLSPSTVKVPLKTSREQLENMPPSSQLAVTNQDYKAPRNEDNPLCTARKTNNAHLGSSVPSESTCIGKVEAGAHAVSRHHPGQRNTATNMTRKSNQATEDQVKGSPRKQLPIQVDSRGVNVVSSNSNNNSLTMHIRLPVYEKVASLSGGSEKTVNQPTSHDNKMKLKTYSTQEEAVSHSASHNKTEMHKRSLDFPTPPRCHDDTYNSTNSTNLHILEKSITTNNKQKQQPAVMCIDILKKNHPPEPTKGETVLSCSYLSSDKTTELQKNILVRSSSERQERPNSPKPDEHLSTTARSRSVGADRISPQIRTPSQESKDNVAPFIEESEACETKNSEEALSANTVMGRELISNVQVINNGDLEDLREIGSGSFGTVFHGRWKGTDVAIKRIKNSCFMYPSSQADKLITEFWREAAIISKLHHPNVLALYGIVNNGPGGTLATVTEFMINGSLKKVLLHKNKYLDWHKRIMVAKDAAIGMEYLHSKDIVHFDLKCDNLLVNIKDPSRPICKVADFGLSKMKQATLVSGGMRGTLPWMAPELLTMSGTKVSEKIDVYSFGIVMWEILTGEDPYDGMHYGGVIGGILSNTLRPLVPTSCNLEWRKLMEQCWSTEPERRPSFAEVATRLRSMLEASQSVTLRVN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 17246111 | 17248016 | + | OsLima_03g0020790.01 | OsLima_03g0020790.01,OsLima_03g0020790.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.325740 | 1.468947 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0401100 | RBH | 5.436677 | 4.566450 | 2.532486 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g28300 | RBH | 3.787269 | 3.164781 | 0.655870 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0401100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0021070 | RBH | 5.613214 | 171.008072 | 1.728879 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020910 | RBH | 3.593362 | 31.138479 | 1.857714 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020970 | RBH | 9.413496 | 50.666649 | 2.708144 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020960 | RBH | 1.372626 | 0.948595 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020800 | RBH | 67.603699 | 32.823360 | 9.793762 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0269400 | RBH | 25.351258 | 68.826256 | 6.5600285 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020540 | RBH | 2.494295 | 4.892768 | 1.616592 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0271400 | RBH | 52.2746715 | 47.0082705 | 2.6321605 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0023170 | SBH | 0.045929 | 0.078455 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020780 | RBH | 5.853938 | 35.734322 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020880 | RBH | 84.121162 | 69.981621 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020770 | RBH | 7.938710 | 11.860816 | 1.232648 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020650 | RBH | 3.813861 | 51.022469 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020580 | RBH | 5.015983 | 1.858506 | 1.356323 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020480 | RBH | 11.933825 | 130.582458 | 4.180489 |
