Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0020480 | OGI:03043010 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:16942092-16948628 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaagcaacaagaagctgatcatcgaactccctgtccccaaagacaatgaccactgaccagtgctttctcttgaagctctccagaatcacaagatcaccgacataacaccagaagcatgatcctctgttcggtaatacagtttaatacttcaggcactatgagatgtagtattacctttgttttcattgaatcccctgcttgtatggtcaacgaaactggtagctgtaatacttctattcccatggctatttatccagggagcagctgagcaaatgaaaaatgtaatgacattagtagttacacctgcgataaatgtagccaaggacgatgcggtaaaaggtttcatcacaattgtcaaagcttgagttcatcgcttcataaaaaattaacaaatataacaaataactttcatccttctgatatttaggtcaggttgtggattaccagatttagtagtaaagcaatcctcttttcaacactcttgatataataataacaaggatgtggtactccaacatcttcttcagacaatcaccaagagggaagttctgctgttctgcacacttagcattccacattgcaaatgcaaacaaacagttaccatcatacttgaggggactgacaataaacatgggtttttagaacttacctttcaccttaaagaagcacttgtgtgtgctagtttgtaacaatttttcataatgtgctcctttaaaagcaggattgtcctttctcagacacatttgtcctattgtgttataatgtagggccttctagaacaattcaacatgaaaagttgaaaacatctaacatggtcttcgacattgctatttcaaaatacatagctaagatccaggatacgagatcaatgtggcagctagctcacttggttgcatatcatatagtcatcaatgtcccattaccagcaagcagcagaagcatctccatttgggcctgtcttctaccactgcaagaattctctataacatgtcacatcaccaaaactatgcacgatacagcatttggatgtcctgcaacagttcttatcgataaggattaaggaggggatggcactgttgcaaaaagttctttctatttttttttctgtcttctttctaagactagcacttcctcaaccaatgaataattaactacctgcaagttgccatggaaaacggaaattgcagtggaataccaaagctaatatttgttgcttttgtacacttgttgtagtttgcatccttagaaagtaaatacaacattaagacttcaccacttacatagaaaggttgacataaatttgataatgggtaacccataataagaatgaattcaaagccatattgaaaatataattgatctgaccaatggtttcatatttaaagcaatagaaagtgatatatggagttgcaatctgactatctgagtgggatttgtgcaattcataagcagcaaacagtcaagaaatgatacaccttgggtgtgaagctgctatcctcttttgtgtgttcctaataaatgaacagatttgccattgggttgctttccacatctgacatgtcaattcattgattgattttgttaaaattatgcagtatttttttttttgcgatagaattatgcagtaattgttgaagcattccttcacaaacatataccatgtagagccagaaacacatattgattcagcagaagttaagattcttctattcttctgaatcaatcacctgcatcatctcaagaacaaataatcccaagcacaaaaattgtgacaaaatttcgaagagagtaacaaataataaggcaagaggaaaatatgtaatctacttccaactatctattaaaatcttagtgtacaaaagcaattcattttttcatgtttcaataccagaagtgacccaattaaacctggtaagagaagtctcctttattgagactcgctgtaaaaaaaaaggtaatttaatttctcatgttcaagacaataagtgacccagcaatcaagcctgccctgagaagtttatggcgcattttattgttcagacttattattgttaagtaacaacaacgttttcaaaaacattaaatactgtatttgcaatggaaggatatcagcctagttaaagaactaaataattctatctaccttttgacaaagcgtgtctttttcaatcaattccagctagagcactagaaaaaaaatgttgtacaggggaaatattgtataaaattttaccaaaaatccccacatgaacagtaaccatctttaaagtggtgaaaccgatttgaatcacggacaatgatctccctctcagttatttttgatatatacttggtagcattatggcaatcaccacacacccgcaaattcttgtatatatggagcggagttctaggaggagtatttataatgccaaaggctatagccaatctctcactatgattattcaatatctgttccttttcatcctcctccacatcctgtagaacaaaactatagtcaggaacataacctagacttctcatctttgccaacagatcaagtagctctctctggatctcttcatgttgagggtggatgttcatctggttaccactgtaaaatacgttcactgatcttttcacctcaattgaactccatccaggggttttttgcaaattctgacgtctgaccaaagatcttacttcatcaactccatcccacttcccaacctttgcatacatattagacattagaacgtaatatccaacgttctctggatcaagttcaaacaagttttgtgaggccacttttcccatttcaacatttccatggatcctacaagcacccagcagagcaccccaaatagcagaatcaggtttaatcggcatgttccgaatgaaatcaaaagcatcatccaactgaccagctcttccaaacatgtctaccatgcaagcataatgttttgcaattggcttaataccatatgcagtttgcatcatattaaagaaattccggccttggtcaactaagccagcatgactacaagcagccaatagtgaaacaaatgtgacatgatcaggactgattccttcctgctgcatttgcgagaagagactgagtgcctttgcaccatgtccatgaactccaacgccagatatgacggcgttccaggggcctgtactcctcctaggcgtttgttcaaacaaaagcattgcctcatccaatttcccacatttagcatataagtctatcacacaagtgccgacatatacatccaggtttaatccagtcttaatagagagtgcatgcattcgtgtgccctgctgcaaggcaccaagatgtgagtatgcaggcaaaacactgacaaaggttccttgaatcggcttcagaccctcatgcttctgcatatggtcatatacatggattgcctcactggcaagtccattctgcatataccctgtgatcagcgtgttccaggatacagcatctcgaactggcatgctgtcaaacatcctctgggcagcctcaatctttgatagcttggcatacatatcaacaatagcgtttcctgcaatgatgtcaccgacatcccacccccgccttaccatatagcaatgcactgatctcccaccacagatatccccacattgagcaatagcagatgccaggctcaaaagcgttagaacatcaggggagaccccactgtccctcataccacagaacatctcgacagcagaagcaacctgcccgccctgctcatgccctgaaatgattgaattccatgtcacaagatcccgcgacgacattccatcgaacaccttccgcgcctcctccagcatccccagcttcccatacacatcgatcatcgcgttacagacgaacagctcgtcatccagcccgtgcttcaccgcatacaagtgcatggccagcgcgagcgccctatccccaagcaggacgcacatgggcagcacgctggagaccgtcaccgcgtccccggcgacgccctccgtgaccatcctcccgaacaggcccaccgcctcggccgcgcgcgcgttgcggcagagccctgacagcatggcgttccaggcgggcacgtcccggtggcgcatttcgtcgaacgccctgtaggcgtcgcggacgcggccgaagcggaggtaggcgtgcacgagtgctcccgaggcgaaggcgtcgccgcggaggaggccgaggcggagcgcgcacgcgtggagctgcgcggcggtgcccgggccctgggcggcgcggaggagcggcgggaaggtgaaggtgtcggggcggagggggaggagcggggaggagaggaggaggtggcggaggagcgggagggcgaggcgggggagggaggcgcgggagaaggcggagatgagggtgttggcgaggagcagcggcgcatggacgtgcgggtcgaggcggcggaggtggccggaggtgacgacgacggcttccacgccacgggggaggagcgccggtgtccgcattggtggaatgggtggttgttggtcccgccccccgcgcgggacgtttttgccgaaaatttgacaaattggtccttgtatagaacttattttaaaaataaaccgcgtcgaaaactaattttaaaaataatccgtaacctcgacgtcatcgtgacaccatcatcgacgctgagattatatctgacgtggtacaaattaaccaaaggagctcgatttgtttggttaaaaaaacgtgtaagctattaaaaccacttttttacaaattgatccttttaaaaaacttattgcgaaactagaccatataaaaaacttcagccaaaaatagatcacgggctccgcgctaaggctgttggtgctaagagcatccccagcaactcatccaaatttgatcctccatattcccatatggatggccatccaaaaagattcctcttccatatctcttctcacttcagcagatcatccaaattacatcctccatatcacatccttctatattttagtaatatcttccaactaactttacatttgtatttgaagagatatattttgaatgacttaatttaacggtgttatttatcatgataatatttcgaaatgaataaattttaacggatatatttttaattgataatttttaactgatatatttaaaatgagtataaaagcaatgcaagtaacatgtactattatatttaggggcaattgtgtttctgcccttgctttacatctcaattgtgattttacccctggtttttagggtttgtgattttgcccctgcttttttgaaacgaagcagccgtctgcccctggtttggacggttgtttggtgggcccgggatttccgaattaaacgaagaaagaaaatgctattataatttgtgaatgactattctacccttcttcaatgaaacaaccaaatccccaaaccttctgtcctcccgatccaatcgagaaccctagttcctgggttgtaagcggcggcggcggcggcttacgcgacaggcggcggcgcgcggcagggaggagcggcggctcgggcgagcgcgcgggggagtccggcgcgggcaggcgcggcgcggcggccccgaggagcggcggctccgtcggcgcggcggccccgcggagcggcggctccgtcggcactgcggcgcggcgtgcaagcgcagggaacggcggctccgtcggcgcgtcggcgcgtcggcgcggccccgcggcgttgcacgcgcaggagacacggcggccggcggccggcggccccgtaggcgtggccacgcggtgttgcacgtgcagggagacgccacggccggcggcgccgcagccagcgagctagcaagcagcgagcaggaagcttgaaacatgcatcctgtgcaagccaaaacatgtccaggggtatatttgtccattcaccacacatttaacaccgttaccatcagttaacagactaggggtaggcagctgcttcgtttcaaaaaagcaggggcaaaatcacaaaccctaaaaaccaggggtaaaatcacaattgagatgtaaagtaagggcataaacacaattgccccttatatgtattgtctactagtactactattcaactatttcttctttttcctactagtactactctgcatcgagctcaactatttcttctttgttcctactagtactactctgcatcgagctcagaagcttgtgggcgagctgaggggcggcggtggctatgcagccgaggggcgacggtgatcgggcgggcgaggggcggcggcggctgtgcagccgagaggcggcggctgttgggtgggcgaggggcggcggcggctatgcagccgaggggcggcgacggtcgagcggcgagggcgcatctggacaaggaggaggcacgcggtggccgtggaggctgcacgcagaggagtcccgatgagggcgacgcggcggaggagcagcagtgcgagcggtggggcggcgcggacggtggggcctccactccggcgatctccaatggcagacccggtatgtccatcatctctattcccccatggtacaatccgaatggtggcgtgagtcat
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| CDS seq | atgactcacgccaccattcggattgtaccatgggggaatagagatgatggacataccgggtctgccattggagatcgccggagtggaggccccaccgtccgcgccgccccaccgctcgcactgctgctcctccgccgcgtcgccctcatcgggactcctctgcgtgcagcctccacggccaccgcgtgcctcctccttgtccagatgcgccctcgccgctcgaccgtcgccgcccctcggctgcatagccgccgccgcccctcgcccacccaacagccgccgcctctcggctgcacagccgccgccgcccctcgcccgcccgatcaccccgtcgtcgtcacctccggccacctccgccgcctcgacccgcacgtccatgcgccgctgctcctcgccaacaccctcatctccgccttctcccgcgcctccctcccccgcctcgccctcccgctcctccgccacctcctcctctcctccccgctcctccccctccgccccgacaccttcaccttcccgccgctcctccgcgccgcccagggcccgggcaccgccgcgcagctccacgcgtgcgcgctccgcctcggcctcctccgcggcgacgccttcgcctcgggagcactcgtgcacgcctacctccgcttcggccgcgtccgcgacgcctacagggcgttcgacgaaatgcgccaccgggacgtgcccgcctggaacgccatgctgtcagggctctgccgcaacgcgcgcgcggccgaggcggtgggcctgttcgggaggatggtcacggagggcgtcgccggggacgcggtgacggtctccagcgtgctgcccatgtgcgtcctgcttggggatagggcgctcgcgctggccatgcacttgtatgcggtgaagcacgggctggatgacgagctgttcgtctgtaacgcgatgatcgatgtgtatgggaagctggggatgctggaggaggcgcggaaggtgttcgatggaatgtcgtcgcgggatcttgtgacatggaattcaatcatttcagggcatgagcagggcgggcaggttgcttctgctgtcgagatgttctgtggtatgagggacagtggggtctcccctgatgttctaacgcttttgagcctggcatctgctattgctcaatgtggggatatctgtggtgggagatcagtgcattgctatatggtaaggcgggggtgggatgtcggtgacatcattgcaggaaacgctattgttgatatgtatgccaagctatcaaagattgaggctgcccagaggatgtttgacagcatgccagttcgagatgctgtatcctggaacacgctgatcacaggaggatcatgcttctggtgttatgtcggtgatcttgtgattctggagagcttcaagagaaagcactggtcagtggtcattgtctttggggacagggagttcgatgatcagcttcttgttgcttga
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| Protein seq | MTHATIRIVPWGNRDDGHTGSAIGDRRSGGPTVRAAPPLALLLLRRVALIGTPLRAASTATACLLLVQMRPRRSTVAAPRLHSRRRPSPTQQPPPLGCTAAAAPRPPDHPVVVTSGHLRRLDPHVHAPLLLANTLISAFSRASLPRLALPLLRHLLLSSPLLPLRPDTFTFPPLLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVTEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEARKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGGSCFWCYVGDLVILESFKRKHWSVVIVFGDREFDDQLLVA |
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| Function | Pentatricopeptide repeat-containing protein At4g33990 [UniProtKB/Swiss-Prot:O81767] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0020480 | OsLima_03g0020480.01 | Chr03 | 16942092 | 16948628 | - | NAM | ||
| CDS seq | atgactcacgccaccattcggattgtaccatgggggaatagagatgatggacataccgggtctgccattggagatcgccggagtggaggccccaccgtccgcgccgccccaccgctcgcactgctgctcctccgccgcgtcgccctcatcgggactcctctgcgtgcagcctccacggccaccgcgtgcctcctccttgtccagatgcgccctcgccgctcgaccgtcgccgcccctcggctgcatagccgccgccgcccctcgcccacccaacagccgccgcctctcggctgcacagccgccgccgcccctcgcccgcccgatcaccccgtcgtcgtcacctccggccacctccgccgcctcgacccgcacgtccatgcgccgctgctcctcgccaacaccctcatctccgccttctcccgcgcctccctcccccgcctcgccctcccgctcctccgccacctcctcctctcctccccgctcctccccctccgccccgacaccttcaccttcccgccgctcctccgcgccgcccagggcccgggcaccgccgcgcagctccacgcgtgcgcgctccgcctcggcctcctccgcggcgacgccttcgcctcgggagcactcgtgcacgcctacctccgcttcggccgcgtccgcgacgcctacagggcgttcgacgaaatgcgccaccgggacgtgcccgcctggaacgccatgctgtcagggctctgccgcaacgcgcgcgcggccgaggcggtgggcctgttcgggaggatggtcacggagggcgtcgccggggacgcggtgacggtctccagcgtgctgcccatgtgcgtcctgcttggggatagggcgctcgcgctggccatgcacttgtatgcggtgaagcacgggctggatgacgagctgttcgtctgtaacgcgatgatcgatgtgtatgggaagctggggatgctggaggaggcgcggaaggtgttcgatggaatgtcgtcgcgggatcttgtgacatggaattcaatcatttcagggcatgagcagggcgggcaggttgcttctgctgtcgagatgttctgtggtatgagggacagtggggtctcccctgatgttctaacgcttttgagcctggcatctgctattgctcaatgtggggatatctgtggtgggagatcagtgcattgctatatggtaaggcgggggtgggatgtcggtgacatcattgcaggaaacgctattgttgatatgtatgccaagctatcaaagattgaggctgcccagaggatgtttgacagcatgccagttcgagatgctgtatcctggaacacgctgatcacaggaggatcatgcttctggtgttatgtcggtgatcttgtgattctggagagcttcaagagaaagcactggtcagtggtcattgtctttggggacagggagttcgatgatcagcttcttgttgcttga
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| Protein seq | MTHATIRIVPWGNRDDGHTGSAIGDRRSGGPTVRAAPPLALLLLRRVALIGTPLRAASTATACLLLVQMRPRRSTVAAPRLHSRRRPSPTQQPPPLGCTAAAAPRPPDHPVVVTSGHLRRLDPHVHAPLLLANTLISAFSRASLPRLALPLLRHLLLSSPLLPLRPDTFTFPPLLRAAQGPGTAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVTEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEARKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGGSCFWCYVGDLVILESFKRKHWSVVIVFGDREFDDQLLVA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.056938 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0396200 | RBH | 0.000000 | 0.468050 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g27880 | RBH | 0.220187 | 0.285381 | 0.136722 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0396200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020770 | RBH | 0.000000 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0020640 | RBH | 0.0 | 0.0 | 0.636741 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020680 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020680 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0020500 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0241200 | SBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0020260 | RBH | 0.0 | 0.0 | 0.090556 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0266600 | RBH | 1.1583015 | 2.33184 | 4.5522475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0022950 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0020520 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0020600 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0020490 | RBH | 0.0 | 0.0 | 0.460373 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0020350 | RBH | 0.109164 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G020360 | RBH | 0.0 | 0.0 | 1.747444 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0020180 | RBH | 0.000000 | 0.0 | 0.000000 |
