Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0019800 | OGI:03041620 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:16212043-16216617 | ||||||||
| Gene Symbol | TT1, OsPAB1, PAB1, OsTT1 | ||||||||||
| DNA seq | aacaacgaacgacacgcgagtcggcggcgacaacaaatcgaaaatcgaacgggagaaattctctctgattctctctcgcgggcggcggaagcaatcgtagttagcagaggccggcgagcgagccgccgccggcgatgggcgacagccagtactccttctccctcaccaccttcaggtgcgctaccctctctctctcttttccggcggagatcgggagcatattggtctctgacgcgctcgtgtggcttccgttccgctgctgcagcccgtcggggaagctggtgcagatcgagcacgcgctgacggcggtcgggtccggccagacctccctcgggatcaaaggtgcgtgccactccctcccctttaatctccgattagggatgatgcggatgagttttttttttttgttggtacattggtacgattgcggtcgtgggatttagggtttaggtcttggcctcgtgtggattgtgggagcgtgtgcgctggttcgtcgcagagggtgggtaggttaggctgggggttttggagcccctggatgcttgtcgactctgctattggcagctagctgtggtgaactggtgatatacattttttttcggtgcctatgccgtattgggcaatgtgggcacttgtggaaaatttgaaccaatgaagttgaaacgtttggcgaagttggttgtttattatttctgtgaagtaaatggagattgtcagagtttgtagattgcaaaagtagaaattctatctataatatgattatctaaagtactaaagaagttgatacttggtctgaagattgtgtcctttacttgcttagatgacctgctaaacaaatccacctaaaacaggaggaacacatttctggaactatgcatgaccgatttgttgtttgtttctggctatgatgctacctgagcttgatttttttttacatagtttttcaaagacaacatgtgcaaatatgaatactataggttgggcttgagctgtctaggatgattaacaccttgcaaatatatctgcacaggcatgaatgaaatctggaaaatgataagttgagttcctatcaatgagttgttcagtgttttataagtagcactgtagccacatgcacgcacctacacacaagtgcctctttgtatgcacaaattgcatggtttccagtgttcatttgtttttcaaaataatctaactgtacctggtctggaaaacaactactatgcttggttctgctcagcaccaatttaacaactgaaggtgtactattgtctgagttgaatgaaactatagtttggcaaatatttcctagacactaacttctaatacttttagttgtccgaataatttgcaatgtgtgttgtaggtgcatatttattagattcctccattacacaggctaggtccataaaattgcttggttcctccaatgcaagcttaataattttgcaaaatatttggtgttgtaacagctgctaatggagtagttattgccaccgagaagaagttgccttctattttagtggatgaaacatctgtaagtgtgacattactcacaatttaagctcccttatctgttcatattctggaggcactaatgaatactcatattcatacataaaggtgcaaaagattcagtcgttgactccaaatattggtgtcgtctacaggtacttattttaactgtgtttcattgttcatatactgctgtcttgctatgtacaaccttattcattatcttacactttatattacgctacataatattgtactgctatcttaatccctctaaaaaaattattttcataatttcttgatcttatatgtattcactgcccctttgcactaacaagatggtatagaaacaactagaaaggcatgagcacatgagacatttcatgtcttttgagaaaattatcgtgtacatactatatatactagggaaaaaaacatgcctacatcataccttctgcctcatcttataaagcattgattcttttaactaattttgctagtgttaatagtttgcaagtttgatttggtaatttagttgactgttaatattttcgaattacaacctgtgaatgcttcattttcatccaataagaacaaaaaacaggaattacattggttcttattctagtgatttgaacgttagaactcgggcttattcttctcttgaaatgcttattacaagtgccaacttcttgttgctgaggctcaatcatgttagacactggcctttggttagattaataactaggatggtcgactctcactactttgttgcatatattcatgtgcttaccttgtttttttttcttccagtggcatggggccagacttccgtgttttagtgaggaaaagtcgaaagcaagcacaacagtattatcgtctgtacaaggtatttgatggtctattttgcagttttacagtgctatcctaaaaaaatatgtcgtagacgtaggaatagtctttcagaagggatttacattgtcagtaaaataaagtgattccgaatcggtgtttctgctttctaactgtattgtctatatataaatgcaggaaactatacctgttacacagctagtccgagaaactgctgctgtcatgcaggagtttacacaatctgggtatgtaaaatttgtacaagcagattgataaaccatgaacattctctgccttacctattcagaagaattaagctgtcattttttatacacaaacagcatgttctagaaagttaacacaatgcttgtttcttatcaatgtaatgcatattctttcacaaactagtaagaatataagaccccagtggtccacgtggtcaaatgaaaaccatggtcggtgaagtacaaaagccagaatatctattttattacttgtagatttgtatataataaatttcattatggcttttttgcagtggtgtaagaccatttggtgtatctttgttgattgctgggtatgatgacaatggtccccaattgtaccaggtattgacaaataattatatacaacagagaaggttttgtgtaaatacaaagtgtcaaatgcgaacaatctttctttctttttttcttgcttcagaccattgcatttacgactttgtagttattaatattgcagacagttgacattgtcattgttttattaggttgatccatcagggtcatacttctcctggaaagcatcagctatggggaaaaatgtgtcaaatgcaaagacatttcttgagaaaaggtaagaagattgacaaaacttacaattgatactagatactgttacatgtggtatcatttttcttccatttgatcataaacatggtgcttaattctatgctacatatctccttttcttaatttaagtgtcaagtttatacaggctcatgccccccccccccccaaaaaaaaaaagaaggcatgaatgcattaatttcatattcatttattgtttcattgcagatacacagaagacatggagcttgacgatgccattcatactgctattttaactctgaaagaagggtacctcactattattgtgtgttgatttgtttaccacttctttcctttttaaaaacaacttgatggattacaaacttgcagatatgaaggacaaatctccgccaacaacattgaaattgggataatccgatctgaccgtgaattcaagtatgatacagacttaatcaacttgttgctaccatttatcagatttcatattctgttatctctgccaaagatctaaatcttttagcttttctaaattgtggatttctagaaaatagccatctgttttgcatcataggcgtctttatcttaaaaaactgcacatttacccccatctgagtagaggctcataataggttaaatcttttctggagaataatcctagatttctttcgtcctttccatttgatgtttttttttttaactaaggtgtagtattttgttatcacgctagtctctggtatagctgtctattctgtccaaactatttgagatgatagaacatgttgcatcgttgccctcagatggtttgctgactgttaatattttcctgaaaaatacagggttctgagccctgcagagatcaaggatttcttggaagaggtggaataatttgtctcaacaatctcatgtttcaaaccagtggacacctgagcagctgcctcgaagttatatcccctttcattcatgaactgattggcaccagtgacacgagacaaatgtttattcagattctcatgaatgaaaatgtgtttttaggaacgtatttgatttggcacggtgtcttctgtatcctcttgtgcccatcctagtctcctcggccagtgctacaactatttggcgtctccttacttttgtagtctgttttacttcttgccaaatgaagcacatgccatcttttgctcttgcaagtgtagtttgctccctggattgttaggacttggaagcccacccagttgttgcagctgttacactggtggtggtaaatcgctgtctggtgtaccatctgagccgtaattctggactgccatctcccaatctaactcatgtcctctttaaagca
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| CDS seq | atgggcgacagccagtactccttctccctcaccaccttcagcccgtcggggaagctggtgcagatcgagcacgcgctgacggcggtcgggtccggccagacctccctcgggatcaaagctgctaatggagtagttattgccaccgagaagaagttgccttctattttagtggatgaaacatctgtgcaaaagattcagtcgttgactccaaatattggtgtcgtctacagtggcatggggccagacttccgtgttttagtgaggaaaagtcgaaagcaagcacaacagtattatcgtctgtacaaggaaactatacctgttacacagctagtccgagaaactgctgctgtcatgcaggagtttacacaatctggtggtgtaagaccatttggtgtatctttgttgattgctgggtatgatgacaatggtccccaattgtaccaggttgatccatcagggtcatacttctcctggaaagcatcagctatggggaaaaatgtgtcaaatgcaaagacatttcttgagaaaagatacacagaagacatggagcttgacgatgccattcatactgctattttaactctgaaagaaggatatgaaggacaaatctccgccaacaacattgaaattgggataatccgatctgaccgtgaattcaaggttctgagccctgcagagatcaaggatttcttggaagaggtggaataa
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| Protein seq | MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEVE |
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| Function | Proteasome subunit alpha type-2 [UniProtKB/Swiss-Prot:Q10KF0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0019800 | OsLima_03g0019800.01 | Chr03 | 16212043 | 16216617 | + | NAM | ||
| CDS seq | atgggcgacagccagtactccttctccctcaccaccttcagcccgtcggggaagctggtgcagatcgagcacgcgctgacggcggtcgggtccggccagacctccctcgggatcaaagctgctaatggagtagttattgccaccgagaagaagttgccttctattttagtggatgaaacatctgtgcaaaagattcagtcgttgactccaaatattggtgtcgtctacagtggcatggggccagacttccgtgttttagtgaggaaaagtcgaaagcaagcacaacagtattatcgtctgtacaaggaaactatacctgttacacagctagtccgagaaactgctgctgtcatgcaggagtttacacaatctggtggtgtaagaccatttggtgtatctttgttgattgctgggtatgatgacaatggtccccaattgtaccaggttgatccatcagggtcatacttctcctggaaagcatcagctatggggaaaaatgtgtcaaatgcaaagacatttcttgagaaaagatacacagaagacatggagcttgacgatgccattcatactgctattttaactctgaaagaaggatatgaaggacaaatctccgccaacaacattgaaattgggataatccgatctgaccgtgaattcaaggttctgagccctgcagagatcaaggatttcttggaagaggtggaataa
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| Protein seq | MGDSQYSFSLTTFSPSGKLVQIEHALTAVGSGQTSLGIKAANGVVIATEKKLPSILVDETSVQKIQSLTPNIGVVYSGMGPDFRVLVRKSRKQAQQYYRLYKETIPVTQLVRETAAVMQEFTQSGGVRPFGVSLLIAGYDDNGPQLYQVDPSGSYFSWKASAMGKNVSNAKTFLEKRYTEDMELDDAIHTAILTLKEGYEGQISANNIEIGIIRSDREFKVLSPAEIKDFLEEVE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.831655 | 0.422263 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0387100 | RBH | 3.663754 | 3.522582 | 12.033183 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g26970 | RBH | 2.504570 | 2.087818 | 2.769256 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0387100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0020130 | RBH | 2.530287 | 61.403351 | 7.047454 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019990 | RBH | 0.874171 | 8.944570 | 5.231893 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0020030 | RBH | 1.886216 | 47.049164 | 15.388577 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0020020 | RBH | 0.173744 | 1.767320 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0019810 | RBH | 3.463134 | 55.844021 | 29.849586 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0256500 | SBH | 19.2995885 | 27.2692225 | 21.5086765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0019590 | RBH | 0.146599 | 2.962389 | 1.892545 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0257700 | SBH | 13.671044 | 22.8194065 | 35.8946475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_02g0026130 | RBH | 1.157289 | 1.154552 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019840 | RBH | 1.831313 | 39.565025 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019940 | RBH | 4.036201 | 26.405972 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0019780 | RBH | 1.311720 | 2.154314 | 1.796270 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0019680 | RBH | 0.520628 | 21.167709 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G019710 | RBH | 0.981668 | 10.801022 | 6.437450 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0019570 | RBH | 0.900251 | 51.464283 | 12.426823 |
