Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0019020 | OGI:03039420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15402996-15404400 | ||||||||
| Gene Symbol | Os-MYB2, OsMYB2, MYB2 | ||||||||||
| DNA seq | ttagcaccagttgcttaggctatggacgtccacgaattggactgcatcgtcgacgtccttgccgccgccgccgccgccgtcgtagaggcactgcccttgaagggcgccgccttgggtggccgttgtcgctgcttggtatgcgccgtcgaagtagtcggaccaccggagctcgtccagcacgccggcgtagtggtccatcgtcgcgatggggttggcgtgccccaggtccagccacggcaggttggtggtggtggcggcggcggcggcgacgttggcgctctgctcggcggcgtcggccgcggcggggctgaggccggccatggaggtgagcgtgctggagctagacgccgagggggcgacgacgacgccgcagtgcgacagcgcgtccatgtcgaaggcggcggcgccgccgcatccggccgcggcctgctgctgcatgctcagcgcgtggtggtaggccgagaacgtcgtcgtcgacgacgagggcgccgccgccgccgcaggccagtagtcgtcgagcggcatcttgatgccgtcgaccagctgcattgcgccgacgagcggcgcctgctgctgctgctgcacggccgccgccgtcggtatctgcagctcggcgtcgctgaacaccgcgcggcaggtggccgtcgacctcgacgccgccgccgccgccgtcgtgttcgtgggcgtcgcggaggagtcggcagcgagcggcttgtgggtggcggggtcgatgccgcggtccctgagcttcttcttgatgtacgagttccagaagttcttgacctcgttgtcggtccgccccggcagctgcgccgcgatctgcgaccacctggccagtgcagtggcagtggcagccgccattgtcagagatggcacagaacgggagagagattgacagatgtgtgtgctactactatacagtacgtacttgttgccaagcatggaatgcagctgaatgatgaggtcttcctcctcctgggagaaggtgcccctcttgaggtctggcctcaggtagtttatccacctcaacctgcagctcttgccgcatctctccagtcctaattaacatcacaattaattctcaactgaatttagctttagccaagatcgagcaacagtaactgtagaccactgacaaaacattgcatgcaagcgaaagcaacacaaatgttcttgcatgctactcaagcagaattaatatgcttttttttttttttgagaattaacagataatgcagtagtatgcatttgcatatgggttaaattagctacctgcaagcttggggacggagctccagcaaccgtggccatacttggcgatgtgattcatgagcttctcgtcctcctccggcgaccacagccccctcctcagcttcttcttgtggcagcacgactgcttcgccat
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| CDS seq | atggcgaagcagtcgtgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctcatgaatcacatcgccaagtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaacttctggaactcgtacatcaagaagaagctcagggaccgcggcatcgaccccgccacccacaagccgctcgctgccgactcctccgcgacgcccacgaacacgacggcggcggcggcggcgtcgaggtcgacggccacctgccgcgcggtgttcagcgacgccgagctgcagataccgacggcggcggccgtgcagcagcagcagcaggcgccgctcgtcggcgcaatgcagctggtcgacggcatcaagatgccgctcgacgactactggcctgcggcggcggcggcgccctcgtcgtcgacgacgacgttctcggcctaccaccacgcgctgagcatgcagcagcaggccgcggccggatgcggcggcgccgccgccttcgacatggacgcgctgtcgcactgcggcgtcgtcgtcgccccctcggcgtctagctccagcacgctcacctccatggccggcctcagccccgccgcggccgacgccgccgagcagagcgccaacgtcgccgccgccgccgccaccaccaccaacctgccgtggctggacctggggcacgccaaccccatcgcgacgatggaccactacgccggcgtgctggacgagctccggtggtccgactacttcgacggcgcataccaagcagcgacaacggccacccaaggcggcgcccttcaagggcagtgcctctacgacggcggcggcggcggcggcaaggacgtcgacgatgcagtccaattcgtggacgtccatagcctaagcaactggtgctaa
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| Protein seq | MAKQSCCHKKKLRRGLWSPEEDEKLMNHIAKWSQIAAQLPGRTDNEVKNFWNSYIKKKLRDRGIDPATHKPLAADSSATPTNTTAAAAASRSTATCRAVFSDAELQIPTAAAVQQQQQAPLVGAMQLVDGIKMPLDDYWPAAAAAPSSSTTTFSAYHHALSMQQQAAAGCGGAAAFDMDALSHCGVVVAPSASSSSTLTSMAGLSPAAADAAEQSANVAAAAATTTNLPWLDLGHANPIATMDHYAGVLDELRWSDYFDGAYQAATTATQGGALQGQCLYDGGGGGGKDVDDAVQFVDVHSLSNWC |
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| Function | Transcription factor MYB61 [UniProtKB/Swiss-Prot:Q8VZQ2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0019020 | OsLima_03g0019020.01 | Chr03 | 15402996 | 15404400 | - | NAM | ||
| CDS seq | atggcgaagcagtcgtgctgccacaagaagaagctgaggagggggctgtggtcgccggaggaggacgagaagctcatgaatcacatcgccaagtggtcgcagatcgcggcgcagctgccggggcggaccgacaacgaggtcaagaacttctggaactcgtacatcaagaagaagctcagggaccgcggcatcgaccccgccacccacaagccgctcgctgccgactcctccgcgacgcccacgaacacgacggcggcggcggcggcgtcgaggtcgacggccacctgccgcgcggtgttcagcgacgccgagctgcagataccgacggcggcggccgtgcagcagcagcagcaggcgccgctcgtcggcgcaatgcagctggtcgacggcatcaagatgccgctcgacgactactggcctgcggcggcggcggcgccctcgtcgtcgacgacgacgttctcggcctaccaccacgcgctgagcatgcagcagcaggccgcggccggatgcggcggcgccgccgccttcgacatggacgcgctgtcgcactgcggcgtcgtcgtcgccccctcggcgtctagctccagcacgctcacctccatggccggcctcagccccgccgcggccgacgccgccgagcagagcgccaacgtcgccgccgccgccgccaccaccaccaacctgccgtggctggacctggggcacgccaaccccatcgcgacgatggaccactacgccggcgtgctggacgagctccggtggtccgactacttcgacggcgcataccaagcagcgacaacggccacccaaggcggcgcccttcaagggcagtgcctctacgacggcggcggcggcggcggcaaggacgtcgacgatgcagtccaattcgtggacgtccatagcctaagcaactggtgctaa
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| Protein seq | MAKQSCCHKKKLRRGLWSPEEDEKLMNHIAKWSQIAAQLPGRTDNEVKNFWNSYIKKKLRDRGIDPATHKPLAADSSATPTNTTAAAAASRSTATCRAVFSDAELQIPTAAAVQQQQQAPLVGAMQLVDGIKMPLDDYWPAAAAAPSSSTTTFSAYHHALSMQQQAAAGCGGAAAFDMDALSHCGVVVAPSASSSSTLTSMAGLSPAAADAAEQSANVAAAAATTTNLPWLDLGHANPIATMDHYAGVLDELRWSDYFDGAYQAATTATQGGALQGQCLYDGGGGGGKDVDDAVQFVDVHSLSNWC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0371800 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0371800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0019320 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0019150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0019180 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0019230 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0019030 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0243700 | SBH | 2.697836 | 0.4433875 | 0.6320495 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018900 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0243200 | RBH | 5.1627575 | 0 | 1.593465 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024340 | SBH | 0.0 | 0.217524 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0019040 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0019100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018970 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018890 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G019010 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018860 | RBH | 0.0 | 0.0 | 0.0 |
