Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018640 | OGI:03038280 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15122279-15129368 | ||||||||
| Gene Symbol | CRK1, OsCRK1, OsCBK, CBK | ||||||||||
| DNA seq | gagattgcctgtgcgaggaagggagcgggcgagtggcggatttgtttttggtttgtttttgagtttgtttttattggtggtatcctctcctcctcctgtgcgaggagcagctggtggattgttcgttccagctccgtttcttgtcttgatttggaatccgggacatttttccgccccccgtttcttgatttccggtccccccccttccttggtggaagtgggaaggggaGggggaaggattttttggtggggaattcgagggggcgaggtgatgaactcttgcctctttgaccagccttgattttcctggtgattttgcttggaatttctcggattttgtGgggggttctttgatccgggctccatgggtctctgccatggcaagtcggcggcggtgctggagccaacggtggaggaggaggaggagggggcgacgcgcgtagccgaggccgcggcagcgccggcgaagccagcgtcgcctgcgccttcggcggcggcggcggcggcggcggcgaagcccgggacgccgaagcagcacaagttcccgttctacctgccgagcccgctcccggcgtcgagctacaagggctcgccggcgaactcgagcgtggcgtcgacgcccgcgcgcggcgggttcaagcggccgttcccgccgccgtcgccggcgaagcacatccgcgcgctcctggcgcggcgccacggctcggtgaagccgaacgaggcgtccatcccggagtccggcgagcccggcgtggcgctggacaagggcttcggcttctccaggcacttcgccgccaagtacgagctcggccgcgaggttggccgcggccacttcggctacacctgcgccgccacctgcaagaagggcgagctcaagggcgacgacgtcgccgtcaaggtcatccccaaggccaaggtcaatccaatccccttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttctatccagttcacgacttgttctccttcgctgaggttttgactcaattttcatgtttattttcctcgcttgggtttaattaattaatacacttaaaatcttctcctgcattgcttagcgtttacacctgattgaatttatattatAtttgtgcttgaatgtattgtttaatgctagacttactttgggctgatgttttcaattttatgttcaaagcatcattgtgtgtggattcaacagagttacctcttgacctcatttggttcagttgccatgcttgtgtttttttagctcaattgctaaatatatcatattaggtgggagaaagagagacattacgaagtaggtttactaaatgcttccatgaggatttgttctggccattaatactttgatgaacaagttagttgcttcactcaacgcttacaaaggacagatagatgagaaaaatcacgtctccatttcgGTTgtttcttgtttggtaatttgcggaggggcaatgttgctccattgaagcttgcttggtgctttacagcattggtttcaaaatgatggaatctgtttctccataatgtgcaagttctccgtatgtgaaaagcttgtgtagcatatttgcttcaagtgagccgaatggcgtcattgtctccttgagctctggtagtattaacatttttatcatcttatatttcattggctgtttagtcgtagagaactattaaatccctgagtcaaagtcaaagaattgttgtggtgttgcgcaattccagcctgtattgttattagctgcgaaacagcgttctattagttctattgaagtactttgccccttctaccataactttcaagtttcaacactgttgtagttgtagaccttcctatgtcttttggtgggaggtgtctaactactatcatatacttatagttgttgcctttctatacatcgatcatcatcttgttgtttatacaacatgttcagagtcttgacttacaattaatataatgctttaagttagggtctccctaccttttgcatgttAaaaaaatattgttgactgtatttcatgtatttatgctgttatctatcacttttttggatatcagtgatgctggttttccttatcgatctagtctagatatcctcctgtagtgctgtctcttgttgctcttctccttttgatgtatactctccttgataatgttaaatgatacataaaacaagcaattatagattatattgattagaaatgcatgtcttttattacgcctgttatattgttgtgcatatcattgtctgttgttatgtaactgtgcattgccaacactaatcccacgacatttttttttgggtatctgtaattgatgtgttactctatgctttgtgctgtgcggtgcaatgttaatatatagaattgttggctgcgctcagagtatgcttgtatttctgcttgtggataagcatccttggtgcaatgctacttccaggccttagagccaaggcccatgcgtgcaacagttggttgatgaactacccaacatttgctgtgctatctagtctcttattgcttggctgaaaccacattgacgtggtgttgttacatgaaatgcggagttggacctgatcacctgactgattggcaaattcttatccaataatgcagtaatcacctgactaattggctaacacatgtatttatatgagtagtatgatatagattttccattgttgtgtgtaataaacaattatttttaatcttattattgtgtaatttgattaataatactgtgaaattgctgcctttgacatctagttacatatatatgagtccactggaactccaattctttcttttttccaagagaaagtccaatttaagtaatactgctaaccagtctcacacaagcaacttctttcgacagatgactactgctattgccattgaagatgtcaggagagaagtcagaatattgagttctttggcagggcacagcaacttagtgcagttttatgatgcttatgaggatgaagaaaatgtatatatagttatggagtaagttcatagtttttccattcttcagtttaacctactgatctgctgaaagttataagtaatgactaaagttttgatattcttatgctaaataaacagaacacacaacatactaattcttctgtaggttaacacgaataacaattgttggttgtttttttatgacaaacttggtctgaagcgaacatgacatgctagcatgtgttttcatttcgccatttggtatcagtcattttgggaaggaaataaaaaatgacatattgatgcaataaattttctctatcatgtttaggttagatatcagtcgcgcgcagacatgatcacatgacatttcattttttagatacatgtgtttaggagctggcttgattggctggcgctgaccatactcatatgagacttggatgcttttgtagccagtgccagtcataatctgtaaataattctcaaacttggctcaatcacaatttactttttatggaaattgtgttttgtacaatcaattctgattgttagctccatcagtgaagcattttactcattaattgctattaaagtttctttctaatatggtacatgtttaagagattaagaggttataatccctttcactgtagacggttttaagggcctggcctcataagtcataaactatttcttagtatatacaaataaagtgtgcactattttaaacaagaatattaggggaggacccttctgattacaaagtaaacaggaatacaaaaagggaaaacatgtacacaagttaaggtccaaaaaagatagcaacagtttataaagctcccaccaaacaaatataggcagaaacactatatccataaagaaagctttcaaattttcctagctactctatatccataaagaaagctttcaactgaattcaaatgtgtatcatttttttgtgtagtaaaatgtcccagaattcaactgtgataatctccttgaaatagggtgttgtgatacctgaaatacttccgtcaattgattattttcaactcactggaattttttcccttgatttaggttatgcaaaggaggtgaactgctggacaggattttggctaggtacttacagttatatcattttctgataccagcattgtttagaacaattgcttcattaattgtactaggattctgaaatctgaatataactgcatacatttttctttgcagaggtggaaaatattctgaggaagatgcaaaggttgttatgcgccaaatcctaagtgttgcttcattttgtcatcttcagggtgttgttcatcgggatctgaaaccagaggtaagtttgattcaagcaattcagatattgtttagatatttctcttttgtaccatttaattttcattcagttgggtgcctatgaaaaatcaaggctgtgggaaagttatctacatcgtacaacatgcttagtgatgtaagagcttataacggatagtttcttatgcatacattcttgatcctttcactctccttaggcttcgttcgttcctgccattggagggagttttttcagcgcacgcgaaatgagaaagattaatacatgattaattaaatattaattattgtaaacttgaaaaatggatttatttgactttttaaaataacttttatatagaacttttttgcaaaaaaCacaccgtttaatagtttggaaagtgtgctaacggaaaacgaggaagttgaaatttgtattgagagtatagaacggggccttgttgtgcaaatactgctattattgttttcaagagcaattttgtgctgatgctaatgtttgcttgcgtttctacttgtgtcttgtagaatttccttttctcgtcaaaggatgagaactctgccatgaaggtcatagacttcggtttgtctgactttgtaaagccaggttagtctaacagattttcttaaaccttgtttagtaaaatgttttatgtttagctatttaactataggcacatctgaccatcattatattctgcagatgagaggcttaatgacattgtcggaagtgcatattatgttgctcctgaagtgctccatcgatcttatggcactgaggcagatatgtggagcattggagtaatagtgtatattttgctttgtggcagccgtcctttctgggcacgtactgagtcaggaatattccgagctgtgctgaaagcagaccctagttttgaggaagccccatggccaaccctctctgctgaagcaaaagactttgtaaggaggctgctcaataaagattaccgcaagaggatgactgctgcacaagccctctgtgagtaccataattatcttcagtttacactgtactaccagtcaactttgcagatgatgaatgcttttttgttctacacatttaaggtcatccatggattcgtggtaccgaagaagtgaagcttcctttggacatgataatttataggcttatgagggcttacataagttcatcttctttacggagagctgcattgagggtaatatttcttttagggtgtattggtttgccctttactaatgatatttatctttattgccccaaattaatgtggaacaatgtcatttatataaattatgctgcatcgctttttagagggtaatttagtggtaaaatcaactttgcatagcaaatgacgttgttttaatgttcttatcattctttcttcagaatagtatgtatcgctaaccatgtgtagagcattattgcactttgcccattattttgtcatatatcgtgcaaatctgattgaatgagtaatataataaggtgatcttagaaaaatcctaaggatgctatattttctcccatattatgatctcacatttcctgtgtgcatttaccatggaatatcttgttgctgataatagtgctgtgctcactttaaaaactactactaagtagctgtttgtgttctgcaggcccttgccaagacattgacaacagatcaaatctattacctaagagaacagtttgaattgataggcccaaacaagagcgatcttattactttgcaaaatttgaagacggtgagttattttaccatttagactaaataactagtctgctatgagattgctaaagtacgctaaacctccaggccttgatgaagaactccacaaatgcaatgaaggattctagggtggttgactttgttaacacagtaagcctaaagtccttttctctctacttttcaaagtagcacctgcagttgtgtaatcacttaccctatcaatgatgccagatatccaatattcagtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatggaaggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggagggtaaccgaccaattgtgatcgacgagctcgcatcggtatatgatccctaacactaaattagcttggggttgggcacgatgaaatgtttctcacaggtgatgacatactattttcaggaacttggattgggtccttcggttcccctacatgttgttctccaagattggatcagacatcctgatggaaaactcagcttccttgggttcatgaaactattgcatggagtttcttcgcggaccatcccaaaaacctgagataataacttattttcttacatcaaccaaggcaaaagtgtgatgactaaactaatctctggctgtctggagaagcggcatggaaccagtacaaagattaacaaagctgtcctagtgtaacaagtgaaaaagctctcctgtcaggcccgcgaatttcgccttctcttaccagatgattgatgttgtgtttgtattcaggtttgtttagaggtgaatgtacagatgagtttaggaaacaggaaaaatgaggtgctaagaaagtgaaacatggtttaatttcgattggtgtaactgtgtgcgtttgatcttcgccgatctgtgaatgtcgtgattggactgaaattgagaagtgaggtggtatcagtaccatattcgtagatatttcttgagTttttttttTCTTATTGAA
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| CDS seq | atgggtctctgccatggcaagtcggcggcggtgctggagccaacggtggaggaggaggaggagggggcgacgcgcgtagccgaggccgcggcagcgccggcgaagccagcgtcgcctgcgccttcggcggcggcggcggcggcggcggcgaagcccgggacgccgaagcagcacaagttcccgttctacctgccgagcccgctcccggcgtcgagctacaagggctcgccggcgaactcgagcgtggcgtcgacgcccgcgcgcggcgggttcaagcggccgttcccgccgccgtcgccggcgaagcacatccgcgcgctcctggcgcggcgccacggctcggtgaagccgaacgaggcgtccatcccggagtccggcgagcccggcgtggcgctggacaagggcttcggcttctccaggcacttcgccgccaagtacgagctcggccgcgaggttggccgcggccacttcggctacacctgcgccgccacctgcaagaagggcgagctcaagggcgacgacgtcgccgtcaaggtcatccccaaggccaagatgactactgctattgccattgaagatgtcaggagagaagtcagaatattgagttctttggcagggcacagcaacttagtgcagttttatgatgcttatgaggatgaagaaaatgtatatatagttatggagttatgcaaaggaggtgaactgctggacaggattttggctagaggtggaaaatattctgaggaagatgcaaaggttgttatgcgccaaatcctaagtgttgcttcattttgtcatcttcagggtgttgttcatcgggatctgaaaccagagaatttccttttctcgtcaaaggatgagaactctgccatgaaggtcatagacttcggtttgtctgactttgtaaagccagatgagaggcttaatgacattgtcggaagtgcatattatgttgctcctgaagtgctccatcgatcttatggcactgaggcagatatgtggagcattggagtaatagtgtatattttgctttgtggcagccgtcctttctgggcacgtactgagtcaggaatattccgagctgtgctgaaagcagaccctagttttgaggaagccccatggccaaccctctctgctgaagcaaaagactttgtaaggaggctgctcaataaagattaccgcaagaggatgactgctgcacaagccctctgtcatccatggattcgtggtaccgaagaagtgaagcttcctttggacatgataatttataggcttatgagggcttacataagttcatcttctttacggagagctgcattgagggcccttgccaagacattgacaacagatcaaatctattacctaagagaacagtttgaattgataggcccaaacaagagcgatcttattactttgcaaaatttgaagacggccttgatgaagaactccacaaatgcaatgaaggattctagggtggttgactttgttaacacaatatccaatattcagtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatggaaggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggagggtaaccgaccaattgtgatcgacgagctcgcatcggaacttggattgggtccttcggttcccctacatgttgttctccaagattggatcagacatcctgatggaaaactcagcttccttgggttcatgaaactattgcatggagtttcttcgcggaccatcccaaaaacctga
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| Protein seq | MGLCHGKSAAVLEPTVEEEEEGATRVAEAAAAPAKPASPAPSAAAAAAAAKPGTPKQHKFPFYLPSPLPASSYKGSPANSSVASTPARGGFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPESGEPGVALDKGFGFSRHFAAKYELGREVGRGHFGYTCAATCKKGELKGDDVAVKVIPKAKMTTAIAIEDVRREVRILSSLAGHSNLVQFYDAYEDEENVYIVMELCKGGELLDRILARGGKYSEEDAKVVMRQILSVASFCHLQGVVHRDLKPENFLFSSKDENSAMKVIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIVYILLCGSRPFWARTESGIFRAVLKADPSFEEAPWPTLSAEAKDFVRRLLNKDYRKRMTAAQALCHPWIRGTEEVKLPLDMIIYRLMRAYISSSSLRRAALRALAKTLTTDQIYYLREQFELIGPNKSDLITLQNLKTALMKNSTNAMKDSRVVDFVNTISNIQYRKLDFEEFSAAAISVYQMEGLETWEQHARQAYEFFDKEGNRPIVIDELASELGLGPSVPLHVVLQDWIRHPDGKLSFLGFMKLLHGVSSRTIPKT |
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| Function | Calcium/calmodulin-dependent serine/threonine-protein kinase 1 [UniProtKB/Swiss-Prot:Q10KY3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018640 | OsLima_03g0018640.01 | Chr03 | 15122279 | 15129368 | + | NAM | ||
| CDS seq | atgggtctctgccatggcaagtcggcggcggtgctggagccaacggtggaggaggaggaggagggggcgacgcgcgtagccgaggccgcggcagcgccggcgaagccagcgtcgcctgcgccttcggcggcggcggcggcggcggcggcgaagcccgggacgccgaagcagcacaagttcccgttctacctgccgagcccgctcccggcgtcgagctacaagggctcgccggcgaactcgagcgtggcgtcgacgcccgcgcgcggcgggttcaagcggccgttcccgccgccgtcgccggcgaagcacatccgcgcgctcctggcgcggcgccacggctcggtgaagccgaacgaggcgtccatcccggagtccggcgagcccggcgtggcgctggacaagggcttcggcttctccaggcacttcgccgccaagtacgagctcggccgcgaggttggccgcggccacttcggctacacctgcgccgccacctgcaagaagggcgagctcaagggcgacgacgtcgccgtcaaggtcatccccaaggccaagatgactactgctattgccattgaagatgtcaggagagaagtcagaatattgagttctttggcagggcacagcaacttagtgcagttttatgatgcttatgaggatgaagaaaatgtatatatagttatggagttatgcaaaggaggtgaactgctggacaggattttggctagaggtggaaaatattctgaggaagatgcaaaggttgttatgcgccaaatcctaagtgttgcttcattttgtcatcttcagggtgttgttcatcgggatctgaaaccagagaatttccttttctcgtcaaaggatgagaactctgccatgaaggtcatagacttcggtttgtctgactttgtaaagccagatgagaggcttaatgacattgtcggaagtgcatattatgttgctcctgaagtgctccatcgatcttatggcactgaggcagatatgtggagcattggagtaatagtgtatattttgctttgtggcagccgtcctttctgggcacgtactgagtcaggaatattccgagctgtgctgaaagcagaccctagttttgaggaagccccatggccaaccctctctgctgaagcaaaagactttgtaaggaggctgctcaataaagattaccgcaagaggatgactgctgcacaagccctctgtcatccatggattcgtggtaccgaagaagtgaagcttcctttggacatgataatttataggcttatgagggcttacataagttcatcttctttacggagagctgcattgagggcccttgccaagacattgacaacagatcaaatctattacctaagagaacagtttgaattgataggcccaaacaagagcgatcttattactttgcaaaatttgaagacggccttgatgaagaactccacaaatgcaatgaaggattctagggtggttgactttgttaacacaatatccaatattcagtacagaaagttggattttgaggagttttctgctgctgccatcagtgtttaccagatggaaggtttggaaacctgggaacaacatgcccggcaagcgtacgagttctttgataaggagggtaaccgaccaattgtgatcgacgagctcgcatcggaacttggattgggtccttcggttcccctacatgttgttctccaagattggatcagacatcctgatggaaaactcagcttccttgggttcatgaaactattgcatggagtttcttcgcggaccatcccaaaaacctga
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| Protein seq | MGLCHGKSAAVLEPTVEEEEEGATRVAEAAAAPAKPASPAPSAAAAAAAAKPGTPKQHKFPFYLPSPLPASSYKGSPANSSVASTPARGGFKRPFPPPSPAKHIRALLARRHGSVKPNEASIPESGEPGVALDKGFGFSRHFAAKYELGREVGRGHFGYTCAATCKKGELKGDDVAVKVIPKAKMTTAIAIEDVRREVRILSSLAGHSNLVQFYDAYEDEENVYIVMELCKGGELLDRILARGGKYSEEDAKVVMRQILSVASFCHLQGVVHRDLKPENFLFSSKDENSAMKVIDFGLSDFVKPDERLNDIVGSAYYVAPEVLHRSYGTEADMWSIGVIVYILLCGSRPFWARTESGIFRAVLKADPSFEEAPWPTLSAEAKDFVRRLLNKDYRKRMTAAQALCHPWIRGTEEVKLPLDMIIYRLMRAYISSSSLRRAALRALAKTLTTDQIYYLREQFELIGPNKSDLITLQNLKTALMKNSTNAMKDSRVVDFVNTISNIQYRKLDFEEFSAAAISVYQMEGLETWEQHARQAYEFFDKEGNRPIVIDELASELGLGPSVPLHVVLQDWIRHPDGKLSFLGFMKLLHGVSSRTIPKT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.089615 | 0.485149 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0366200 | RBH | 7.303228 | 7.500160 | 14.667124 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g25070 | RBH | 2.939090 | 3.113149 | 2.082718 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0366200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018930 | RBH | 2.224006 | 18.901350 | 11.521880 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018760 | RBH | 0.641090 | 9.071243 | 6.466472 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018790 | RBH | 2.674742 | 25.439547 | 19.662243 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018840 | RBH | 0.386201 | 0.748808 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018570 | RBH | 15.045540 | 31.396488 | 30.089586 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0237200 | RBH | 20.9605355 | 39.253832 | 36.8257675 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018430 | RBH | 0.341998 | 2.419704 | 2.087824 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0237900 | RBH | 22.302223 | 35.0708065 | 41.126608 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0024790 | RBH | 0.141250 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018670 | RBH | 1.487980 | 26.352766 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018730 | RBH | 9.533073 | 27.689102 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018600 | RBH | 1.935667 | 2.789595 | 2.867736 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018510 | RBH | 0.774189 | 15.961800 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018550 | RBH | 1.015441 | 7.272718 | 6.585321 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018470 | RBH | 3.119513 | 46.205379 | 15.724834 |
