Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018570 | OGI:01011440 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:15064618-15067828 | ||||||||
| Gene Symbol | OS-CAD | ||||||||||
| DNA seq | ttaaatgtgctttagagggcatgttggaaaagtgtgatctgttcgttgacaataactgcaatgataaacttctttactctgtaattcctctctaaatgatttgtatctttgagatggtcttccctttgactttgctatgtctggatctatcaaaatttcttcattgttttcttctgtttcttcaatgacttctccatttgttgtatcagttttgtctatctccatttgctgctttgttctttgctctgaattcattgatatcaattctttttctaacttgtcaatctgatcaactgcaaattggaacgaatcaatactttttgatccttgtgaggctatttcagcacatttccttgacagaatattgaatctgaggactgagctctccgataaatgtataattctatcttcaaaatcatatttttctttgtaatccttttttctccaccgatcgataatatatttctttggaatcttcataatgttgaggtgaagcataattttcaatatgtgggagcaaagaaagccatctttctcaaattttgagcaaatataagtgtattcctccttttcagagtcaacaattacaaggtacttccttcttcttactacttttattttctgattcaatgcaagaaaaacttcataagtcttcaatttctcgacctgaatcAattgtaatcttgttgtcctcttaagttcaacttggaactttttgaatatttttgaattgtacagcttgacagcttggtactcaatgtagtaatgagaccaaagtttgcttggcctttttgtccttgaattatgatcatctagctgctccaaattctgaatagtgtccattactctgacatattctatcaaaaaacttattatactgtattgtggaccaacatctttcttaaaccttgaatttgtaccttcacttagagctgtgctttttatgaatggacaaaaatttgttttgaagtatactggtatgaatctctttctaattgaccacatgtgcttcaaaaagttgatgtgctgaacctcataggaatcaaccatttcattccacaaatattcaaattcttcttcagtaactgagttattcattatatcctcatactcatcatacaacttttcttttgacttgaacaaagttccagacagattgaatgctttccttactatatgaaagaagcaattcctatgtgttgaatttggaaaaatctgtcttattgctgacctcatagctccatcctgatcagttataattgttttttgtgctttttctgacattgctttcaaaaaagttatgaacaaccatttaaatgtttctgcagtctcatcatgcagaaaggcacacccaaaaacaattgtatttccatgtcatgaaatcccaacaaatggagcaaatggaagattgtatctatttgtgaaatatgttgtatcaaaactaacaacatctccatacttctcgtaccagtcaattgaccttccatcagtccaaaacaaatttgtcaccttcttattctcatccaaatcaaattcataaaagaactttggatctttctccttcttctttctaaaaaattgaagaacttgcatcatatcattgctacttgtctctttatttatacaagttctcacattactaacatccttcttagtataagggaaagatgtcagccctcctctcaaagttgacaaaatcacaatcatatgccttgtgggaatattgcattcctttagtatccttatcatcattttctcttctgttgtcatatttttgtgtgacttcaagaatctaacttcatctcttggactcatcttatgattgtgatctaaattaacccttgtaattctccaaatcaaatttctcttagaaattaccagtgcacagttacaacttgtggctttaatctcattattgtttctctctgctactactgtctcttctgtttcttcttcttgtgattctgactttgcttttccatgtcgattgcatttgaatgttactctaatcacttctccattcctttttttgcttgtactatggtaattgtgagcaatgacaacagaaaatccagccaacaaagcataaaagttaaagaaatcgtgtgcttctttaattgatttgaactgcatatcaactcttggaatgtacttcgcatcaattgctgcattatttccttttgtagcttcttcttgttcttgctccaaaaaattgtttatatcttcttctgtcaacatttctccatttgcatctgaatcattactttccactatatcaacatttgttgttgcttgatttccaatttcagtactgttgtcagctgaattttgcacctgcttattcaaaaattcaatttcatatttcaaacaattattttttaaaattttttttctttaatttcacaacaattattatcaaatcaaattttatcttttagatttgaataacattcttcaaatgtaaaattttcagtaatgaaaagttcttagtaaatcttacattttgaccgtttgacagattgaacatatcaagattccaattttccaattcattatcttccatatcctcatcttcaacctttAaaaatagttagaacaaataatatcgtaagtaaactcaaacattaattgtatcacaaatacgatttatagaaaaaaaattaattcatacctgatttgtagtagcataatccatatcaaaaggaatatcttctgttctacttgttgtcaatatcattgaattctacacaaaaagtaattcaaataataagacaattatttaaaatttaatacatatttactattttcttttttcttatgaaatatgtgagtacctgaaatgctcttggtgtagcaacaaagtttgattctgttgatatttcttgctgcatttgaaatttaaaatgttagttttactcattaataatattgtttatctgtcttcaacattacatttattacacttgtaaaatacctgaacttcagatattgaaggttgagatgatataatttgttccatgagacttgtatatgaaaaattttgagcctgcaaattgaaaacaaatttattttatgacatgtattgctgatttttgtttgatattataaattctgtcattccaaaacttactcctaaaagagaccattcatcatgtagagtacaattgttgtactcatcacttgaatttgttttttctctatttaatttcat
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| CDS seq | atgaaattaaatagagaaaaaacaaattcaagtgatgagtacaacaattgtactctacatgatgaatggtctcttttaggagctcaaaatttttcatatacaagtctcatggaacaaattatatcatctcaaccttcaatatctgaagttcagcaagaaatatcaacagaatcaaactttgttgctacaccaagagcatttcagaattcaatgatattgacaacaagtagaacagaagatattccttttgatatggattatgctactacaaatcaggttgaagatgaggatatggaagataatgaattggaaaattggaatcttgatatgttcaatctgtcaaacggtcaaaatgtgcaaaattcagctgacaacagtactgaaattggaaatcaagcaacaacaaatgttgatatagtggaaagtaatgattcagatgcaaatggagaaatgttgacagaagaagatataaacaattttttggagcaagaacaagaagaagctacaaaaggaaataatgcagcaattgatgcgaagtacattccaagagttgatatgcagttcaaatcaattaaagaagcacacgatttctttaacttttatgctttgttggctggattttctgttgtcattgctcacaattaccatagtacaagcaaaaaaaggaatggagaagtgattagagtaacattcaaatgcaatcgacatggaaaagcaaagtcagaatcacaagaagaagaaacagaagagacagtagtagcagagagaaacaataatgagattaaagccacaagttgtaactgtgcactgcacatcaactttttgaagcacatgtggtcaattagaaagagattcataccagtatacttcaaaacaaatttttgtccattcataaaaagcacagctctaagtgaaggtacaaattcaaggtttaagaaagatgttggtccacaatacagtataataagttttttgatagaatatgtcagagtaatggacactattcagaatttggagcagctagatgatcataattcaaggacaaaaaggccaagcaaactttggtctcattactacattgagtaccaagctgtcaagctgtacaattcaaaaatattcaaaaagttccaagttgaacttaagaggacaacaagattacaatTgattcaggtcgagaaattgaagacttatgaagtttttcttgcattgaatcagaaaataaaagtagtaagaagaaggaagtaccttgtaattgttgactctgaaaaggaggaatacacttatatttgctcaaaatttgagaaagatggctttctttgctcccacatattgaaaattatgcttcacctcaacattatgaagattccaaagaaatatattatcgatcggtggagaaaaaaggattacaaagaaaaatatgattttgaagatagaattatacatttatcggagagctcagtcctcagattcaatattctgtcaaggaaatgtgctgaaatagcctcacaaggatcaaaaagtattgattcgttccaatttgcagttgatcagattgacaagttagaaaaagaattgatatcaatgaattcagagcaaagaacaaagcagcaaatggagatagacaaaactgatacaacaaatggagaagtcattgaagaaacagaagaaaacaatgaagaaattttgatagatccagacatagcaaagtcaaagggaagaccatctcaaagatacaaatcatttagagaggaattacagagtaaagaagtttatcattgcagttattgtcaacgaacagatcacacttttccaacatgccctctaaagcacatttaa
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| Protein seq | MKLNREKTNSSDEYNNCTLHDEWSLLGAQNFSYTSLMEQIISSQPSISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYATTNQVEDEDMEDNELENWNLDMFNLSNGQNVQNSADNSTEIGNQATTNVDIVESNDSDANGEMLTEEDINNFLEQEQEEATKGNNAAIDAKYIPRVDMQFKSIKEAHDFFNFYALLAGFSVVIAHNYHSTSKKRNGEVIRVTFKCNRHGKAKSESQEEETEETVVAERNNNEIKATSCNCALHINFLKHMWSIRKRFIPVYFKTNFCPFIKSTALSEGTNSRFKKDVGPQYSIISFLIEYVRVMDTIQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKLYNSKIFKKFQVELKRTTRLQLIQVEKLKTYEVFLALNQKIKVVRRRKYLVIVDSEKEEYTYICSKFEKDGFLCSHILKIMLHLNIMKIPKKYIIDRWRKKDYKEKYDFEDRIIHLSESSVLRFNILSRKCAEIASQGSKSIDSFQFAVDQIDKLEKELISMNSEQRTKQQMEIDKTDTTNGEVIEETEENNEEILIDPDIAKSKGRPSQRYKSFREELQSKEVYHCSYCQRTDHTFPTCPLKHI |
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| Function | Protein FAR1-RELATED SEQUENCE 3 [UniProtKB/Swiss-Prot:Q9ZVC9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018570 | OsLima_03g0018570.01 | Chr03 | 15064618 | 15067828 | - | NAM | ||
| CDS seq | atgaaattaaatagagaaaaaacaaattcaagtgatgagtacaacaattgtactctacatgatgaatggtctcttttaggagctcaaaatttttcatatacaagtctcatggaacaaattatatcatctcaaccttcaatatctgaagttcagcaagaaatatcaacagaatcaaactttgttgctacaccaagagcatttcagaattcaatgatattgacaacaagtagaacagaagatattccttttgatatggattatgctactacaaatcaggttgaagatgaggatatggaagataatgaattggaaaattggaatcttgatatgttcaatctgtcaaacggtcaaaatgtgcaaaattcagctgacaacagtactgaaattggaaatcaagcaacaacaaatgttgatatagtggaaagtaatgattcagatgcaaatggagaaatgttgacagaagaagatataaacaattttttggagcaagaacaagaagaagctacaaaaggaaataatgcagcaattgatgcgaagtacattccaagagttgatatgcagttcaaatcaattaaagaagcacacgatttctttaacttttatgctttgttggctggattttctgttgtcattgctcacaattaccatagtacaagcaaaaaaaggaatggagaagtgattagagtaacattcaaatgcaatcgacatggaaaagcaaagtcagaatcacaagaagaagaaacagaagagacagtagtagcagagagaaacaataatgagattaaagccacaagttgtaactgtgcactgcacatcaactttttgaagcacatgtggtcaattagaaagagattcataccagtatacttcaaaacaaatttttgtccattcataaaaagcacagctctaagtgaaggtacaaattcaaggtttaagaaagatgttggtccacaatacagtataataagttttttgatagaatatgtcagagtaatggacactattcagaatttggagcagctagatgatcataattcaaggacaaaaaggccaagcaaactttggtctcattactacattgagtaccaagctgtcaagctgtacaattcaaaaatattcaaaaagttccaagttgaacttaagaggacaacaagattacaatTgattcaggtcgagaaattgaagacttatgaagtttttcttgcattgaatcagaaaataaaagtagtaagaagaaggaagtaccttgtaattgttgactctgaaaaggaggaatacacttatatttgctcaaaatttgagaaagatggctttctttgctcccacatattgaaaattatgcttcacctcaacattatgaagattccaaagaaatatattatcgatcggtggagaaaaaaggattacaaagaaaaatatgattttgaagatagaattatacatttatcggagagctcagtcctcagattcaatattctgtcaaggaaatgtgctgaaatagcctcacaaggatcaaaaagtattgattcgttccaatttgcagttgatcagattgacaagttagaaaaagaattgatatcaatgaattcagagcaaagaacaaagcagcaaatggagatagacaaaactgatacaacaaatggagaagtcattgaagaaacagaagaaaacaatgaagaaattttgatagatccagacatagcaaagtcaaagggaagaccatctcaaagatacaaatcatttagagaggaattacagagtaaagaagtttatcattgcagttattgtcaacgaacagatcacacttttccaacatgccctctaaagcacatttaa
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| Protein seq | MKLNREKTNSSDEYNNCTLHDEWSLLGAQNFSYTSLMEQIISSQPSISEVQQEISTESNFVATPRAFQNSMILTTSRTEDIPFDMDYATTNQVEDEDMEDNELENWNLDMFNLSNGQNVQNSADNSTEIGNQATTNVDIVESNDSDANGEMLTEEDINNFLEQEQEEATKGNNAAIDAKYIPRVDMQFKSIKEAHDFFNFYALLAGFSVVIAHNYHSTSKKRNGEVIRVTFKCNRHGKAKSESQEEETEETVVAERNNNEIKATSCNCALHINFLKHMWSIRKRFIPVYFKTNFCPFIKSTALSEGTNSRFKKDVGPQYSIISFLIEYVRVMDTIQNLEQLDDHNSRTKRPSKLWSHYYIEYQAVKLYNSKIFKKFQVELKRTTRLQLIQVEKLKTYEVFLALNQKIKVVRRRKYLVIVDSEKEEYTYICSKFEKDGFLCSHILKIMLHLNIMKIPKKYIIDRWRKKDYKEKYDFEDRIIHLSESSVLRFNILSRKCAEIASQGSKSIDSFQFAVDQIDKLEKELISMNSEQRTKQQMEIDKTDTTNGEVIEETEENNEEILIDPDIAKSKGRPSQRYKSFREELQSKEVYHCSYCQRTDHTFPTCPLKHI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0718200 | SBH | 0.281964 | 0.580244 | 1.648478 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g24970 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0718200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0025550 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025330 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025380 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018760 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018520 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0260500 | SBH | 0.0150225 | 0 | 0.005798 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018350 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0261300 | SBH | 0 | 0.009151 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023950 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018600 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018660 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018530 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018440 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018470 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018390 | RBH | 0.299351 | 0.0 | 0.000000 |
