Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018350 | OGI:03037930 | 12/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:14891361-14896480 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggtgatgctagtcgacacgctcgaacgccttggcatagacaaccacttccgtcacgagatcgcggcgatgttacaccgcgtacaccgcgagcagcaggggtgcactgccggctccgacgacgacgatgacctccacattacttcccttcagttccgtctacttcgcaagcacggcttcagggtatctgcaggtacaataacatactctccactttttttaatatataacaccgttcatttgatcattcatcttatcTAaaaaaattcatataattatcatttattttattgtaacttgatttatcatcaaatgttttttaagcctgatttaaTttttttatttgcacaataattttaaataaaatgaatggttaaacgtttataaaaaggttaaccgtgttatatattaaaaaacggaggtagtatcaactctccggaatatgaaggttcctagctaaacacctgaacaaatatatgcagatctgaaaaggtataccgtctaagtacatagctgggtcgatttttaaatctgtacatatgtagatgcaagatatatcccatacatatatgtatacatatacatacacacatatgtgtgtatgtatgtatgtatgtatgtatgtatgtatgtatgtatagagtaattgagaattttgaggaagcacctatgttaacaaaataatctagatcatgtcctaatacatatacatatgtagattaattagattttgcaaaatatattaacctagaaatccagaatcaataaatatggggccgtaacagctccatcgtttgctggctgtgttcgtttcactatgttcccaactcctctccctcgtgtttcatacgtacgcttttcaaactgctaaacggtgcgttttttgcAaaaaaaaattatatatgaaagttgcttaaaaaaatcttattgatcctttttttaaaaaaaatagttaatacttaattaatcacgcgctaatagaccactccgtttttcgtgtggagggaatgagttcccatcccaaaggaacaaacgcagcaatattctcttagcaaccgcggccaaaatttaaaataggaaacctaattttatatttgattttgataattttttattatagtttattttccaaaattgtttttaaatcattaaaatacaaatataaatgttttatctataaattcgtttcagctgcatcgttcatttttttcacggcttatcagtatttccgcaaacatgactgtaattttaaaagtcaaaattaagagttagagacttgggaaatatcatgcatggactcttctttcaatctaatccactccaattaagaaataaattcgaaattcataattataaagaagtgcccattccagagtgtcaatttagcattttattaatttaattctgaaattaataattagccagttgaaactgattttgaactcttttttaatctaatataaatgcaaggccgaacaataaATTattccattatagaagaaatacaaagttacaatttgcatgatgttgcaattcattAaaaataaaattacatgtagaaatattcaaacttggattaaaagaaaatataatataaaattgtggttaagaaaagaaaaattgcatatagcatatgccactgcaattttcggctccggaacgtgcagtcttaactactaggtgactggaaattttcaggcacctgaaatatagcaatcctatagtaacatacatgagttcttcactaatacaaaatatttactgctgtaatagctgtattcgacaagtttatagacagcaagggcagtttcagagcgaccctaagcagtgacacgaggggcctgctaagcctgtacaacgcggctcacatggccatgcctggcgaggaggcgctggacgacgcgatcgcgttcgcgaggcaccaccttcggtccatacaaggtaagcttaggtcgccgatggccgagcaggtctcccgtgcccttgacatccctctgccgcgggcgcccaggcggctggagacggtgcgctacatcgccgagtacgagcacgagccagctttcgacggcgtggcgctggagctcgccaagctggactttgagctcgtcaggtctcttcacctcagggagctcaaggccctcaccctgtaagtctcttcacttctttgcctcttgactcttcagcccacatgctccctacttaaattttcctctcattatacagaaatatttttttctatacaagacactcacggatcgtaactggtcgagtctgcaaaaatcaacctctattttcacatataactcgttaaaagtaccgcccgcaaaaatcaattttcataggtgagccttttaagaatccgcacgcaaaaataagcctatttttcaggtgaacctttcaaggggccgcacacaaatatatattttcacaggcgggcctattaaggatctgcctaaagtctaagttacatccttgtatccctcttaaacacttcaaaatatttcattcttatccactcatctctctcactccttctctccgcattactttctctccactctcacacctcctatcaaacacgtggccagcggcaggtggcgggcagatccacctccgttgggcccatgatggcccaatctgccgcacatgggcccaatctgccgccgccagacccgtgacaactggatccacaggcggcgggtaaagcggccaatggcaggagacgggtaaagcggccagtggcgggagtcgggtgaatcagcctagcaacgggtggcgggcgacgcgcccgatggtgagaagcgggtgccgcccaaatctcgcagcggcgggaggagcccaggggcagcagctagggttttgatttgttttacgatttttattttttccggacttttatttttgcatgcggacAacataagcacccgcAcacgcaaaccggattttagcgcatgggtgcaccacctgcatggacaattagtgattttcgcatacactttccgggcaaacgggccggaggttggtacgtaaaaatcactttaggaccatctggAaaaattgttttttttactggtgtttatttcgtgttataagtcatcttaagttttttttactaagttaaacttaagttataagtttgattcaatttatagaaaaatttataaatctacgataccaaatcgatttcattaaaaatatcatttagtttattttaataatatgtttgttttgggttggaaatgctgctttattttcttataaagttaaacttaaaaatttgattaaataaaagttaaaacggtatataatacgaaattcgaacggatgtagtagtcaccaattagccatgtcaatctattatgactaataaatgcgtgttcacaattgccaaattcaacaattaattagttcaaactagctcttggttgatttcatatgtatgtttgcgcagctggtggaaagacatgtacaacagcgtcaagctaagttatgctagaaaccgtatcgtggagacttacttctggacctgcggcatataccatgaggaggagtactctcgcgcacgtatcatattcaccaaagtttttggactcatgtctttgatgaacgacacttacgacgcacacgccaccttagaggagtgccacaagctcaacaaagctgtacagaggttttttttttatgaacaaaagatgtacttatataaaagttaagagcaactttacagtcctcaaggaggtaacatgagataccacttttttctattataaatttagtaccttatagtatctagtTAtcaagaggtactaaatttacactaaatttttgatacctcataacatcttctcaagtactgtaaaattgctcAaaagtatctaggtattaagAagtaccaaatttacaatttttgatacctcatgagacctactcaagtactgtaaaattgctcaaaagttaacgatggtctagttgttatgtaatttgccaacaaagagcactaaattagtttatccttgtatgtatgtagatgggataagagcgcggtctctattctacccgaatatcttcatgtcttctacataaagttactgaacaactttgacgagttagaggattgcttggagccaaccgagaagtaccgcatgtcttacgccaaaactggggtaaaatcctggcacacaGaaaatgatcgacatattcaacgtgcacgttcgatcatcatattcatccacacaattaattaattgttgctcctgcacctaccataatttaattatgtcttatatacatgctacagtacaggcagttgtcggaatactacctccgtgaggcccaatggtcgagcgacaaatacacgcccagcttcgccgagcacctggacctgtctgccatgtcctccggcttcccgcagctggccccggtggtgctgttgggcgtgcgcgacggcgacggcgcggccaccgcggaggcgttcgggtgggcggctgccgtccccgccctggtccgcgccagcgcggagctcgcccgcttcctcaacgacaccgcctcctacaagaccgggaagagcggcagggacatggcgagcacagtggagtgctacatggcggagcgcggcgtgggcggggaggaggccgtggcggcggtggccgcgatggcggagagcgcgtggaggacgattaaccgggagtgcgtggagatggatcgggcactgctcccggcggcgcggctggtggtgaacctgacgaggatgctggaggtgatctaccttggtggcagggacGggtacaccgccggcgccgacatcaaagacctcgtcaccaacttcttcctcgcaacgccctcccagtttaactagatacagcaaagcatatgcacatacacatatactacatgtgtaaaatcgtgtaacgtttgcatgtacaccgaagtaataaattaatatgcatgtgtatcttaattacaaataagatggagcaaatccaccggccgcgcagctgctggtgaacctgacgagcaccatggaggtggtgtacctcggcggcaaggacggctacaccttcggctccgggctcaagggggtcatcgccgatctcttagtcgacccagtccatgaagattag
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| CDS seq | atggtgatgctagtcgacacgctcgaacgccttggcatagacaaccacttccgtcacgagatcgcggcgatgttacaccgcgtacaccgcgagcagcaggggtgcactgccggctccgacgacgacgatgacctccacattacttcccttcacaagggcagtttcagagcgaccctaagcagtgacacgaggggcctgctaagcctgtacaacgcggctcacatggccatgcctggcgaggaggcgctggacgacgcgatcgcgttcgcgaggcaccaccttcggtccatacaaggtaagcttaggtcgccgatggccgagcaggtctcccgtgcccttgacatccctctgccgcgggcgcccaggcggctggagacggtgcgctacatcgccgagtacgagcacgagccagctttcgacggcgtggcgctggagctcgccaagctggactttgagctcgtcaggtctcttcacctcagggagctcaaggccctcaccctctggtggaaagacatgtacaacagcgtcaagctaagttatgctagaaaccgtatcgtggagacttacttctggacctgcggcatataccatgaggaggagtactctcgcgcacgtatcatattcaccaaaagcgcggtctctattctacccgaatatcttcatgtcttctacataaagttactgaacaactttgacgagttagaggattgcttggagccaaccgagaagtaccgcatgtcttacgccaaaactgggtacaggcagttgtcggaatactacctccgtgaggcccaatggtcgagcgacaaatacacgcccagcttcgccgagcacctggacctgtctgccatgtcctccggcttcccgcagctggccccggtggtgctgttgggcgtgcgcgacggcgacggcgcggccaccgcggaggcgttcgggtgggcggctgccgtccccgccctggtccgcgccagcgcggagctcgcccgcttcctcaacgacaccgcctcctacaagaccgggaagagcggcagggacatggcgagcacagtggagtgctacatggcggagcgcggcgtgggcggggaggaggccgtggcggcggtggccgcgatggcggagagcgcgtggaggacgattaaccgggagtgcgtggagatggatcgggcactgctcccggcggcgcggctggtggtgaacctgacgaggatgctggaggtgatctaccttggtggcagggacGggtacaccgccggcgccgacatcaaagacctcctgctggtgaacctgacgagcaccatggaggtggtgtacctcggcggcaaggacggctacaccttcggctccgggctcaagggggtcatcgccgatctcttagtcgacccagtccatgaagattag
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| Protein seq | MVMLVDTLERLGIDNHFRHEIAAMLHRVHREQQGCTAGSDDDDDLHITSLHKGSFRATLSSDTRGLLSLYNAAHMAMPGEEALDDAIAFARHHLRSIQGKLRSPMAEQVSRALDIPLPRAPRRLETVRYIAEYEHEPAFDGVALELAKLDFELVRSLHLRELKALTLWWKDMYNSVKLSYARNRIVETYFWTCGIYHEEEYSRARIIFTKSAVSILPEYLHVFYIKLLNNFDELEDCLEPTEKYRMSYAKTGYRQLSEYYLREAQWSSDKYTPSFAEHLDLSAMSSGFPQLAPVVLLGVRDGDGAATAEAFGWAAAVPALVRASAELARFLNDTASYKTGKSGRDMASTVECYMAERGVGGEEAVAAVAAMAESAWRTINRECVEMDRALLPAARLVVNLTRMLEVIYLGGRDGYTAGADIKDLLLVNLTSTMEVVYLGGKDGYTFGSGLKGVIADLLVDPVHED |
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| Function | Beta-selinene synthase [UniProtKB/Swiss-Prot:A0A291LSD6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018350 | OsLima_03g0018350.01 | Chr03 | 14891361 | 14896480 | + | NAM | ||
| CDS seq | atggtgatgctagtcgacacgctcgaacgccttggcatagacaaccacttccgtcacgagatcgcggcgatgttacaccgcgtacaccgcgagcagcaggggtgcactgccggctccgacgacgacgatgacctccacattacttcccttcacaagggcagtttcagagcgaccctaagcagtgacacgaggggcctgctaagcctgtacaacgcggctcacatggccatgcctggcgaggaggcgctggacgacgcgatcgcgttcgcgaggcaccaccttcggtccatacaaggtaagcttaggtcgccgatggccgagcaggtctcccgtgcccttgacatccctctgccgcgggcgcccaggcggctggagacggtgcgctacatcgccgagtacgagcacgagccagctttcgacggcgtggcgctggagctcgccaagctggactttgagctcgtcaggtctcttcacctcagggagctcaaggccctcaccctctggtggaaagacatgtacaacagcgtcaagctaagttatgctagaaaccgtatcgtggagacttacttctggacctgcggcatataccatgaggaggagtactctcgcgcacgtatcatattcaccaaaagcgcggtctctattctacccgaatatcttcatgtcttctacataaagttactgaacaactttgacgagttagaggattgcttggagccaaccgagaagtaccgcatgtcttacgccaaaactgggtacaggcagttgtcggaatactacctccgtgaggcccaatggtcgagcgacaaatacacgcccagcttcgccgagcacctggacctgtctgccatgtcctccggcttcccgcagctggccccggtggtgctgttgggcgtgcgcgacggcgacggcgcggccaccgcggaggcgttcgggtgggcggctgccgtccccgccctggtccgcgccagcgcggagctcgcccgcttcctcaacgacaccgcctcctacaagaccgggaagagcggcagggacatggcgagcacagtggagtgctacatggcggagcgcggcgtgggcggggaggaggccgtggcggcggtggccgcgatggcggagagcgcgtggaggacgattaaccgggagtgcgtggagatggatcgggcactgctcccggcggcgcggctggtggtgaacctgacgaggatgctggaggtgatctaccttggtggcagggacGggtacaccgccggcgccgacatcaaagacctcctgctggtgaacctgacgagcaccatggaggtggtgtacctcggcggcaaggacggctacaccttcggctccgggctcaagggggtcatcgccgatctcttagtcgacccagtccatgaagattag
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| Protein seq | MVMLVDTLERLGIDNHFRHEIAAMLHRVHREQQGCTAGSDDDDDLHITSLHKGSFRATLSSDTRGLLSLYNAAHMAMPGEEALDDAIAFARHHLRSIQGKLRSPMAEQVSRALDIPLPRAPRRLETVRYIAEYEHEPAFDGVALELAKLDFELVRSLHLRELKALTLWWKDMYNSVKLSYARNRIVETYFWTCGIYHEEEYSRARIIFTKSAVSILPEYLHVFYIKLLNNFDELEDCLEPTEKYRMSYAKTGYRQLSEYYLREAQWSSDKYTPSFAEHLDLSAMSSGFPQLAPVVLLGVRDGDGAATAEAFGWAAAVPALVRASAELARFLNDTASYKTGKSGRDMASTVECYMAERGVGGEEAVAAVAAMAESAWRTINRECVEMDRALLPAARLVVNLTRMLEVIYLGGRDGYTAGADIKDLLLVNLTSTMEVVYLGGKDGYTFGSGLKGVIADLLVDPVHED
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0362500 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g24760 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0362500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018650 | RBH | 0.0 | 2.960084 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018470 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018510 | RBH | 0.0 | 0.0 | 0.268500 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018550 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018290 | RBH | 0.0 | 0.0 | 0.679424 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0233800 | SBH | 0.1069285 | 0.857658 | 0.075035 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0018120 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0235200 | RBH | 0.0501095 | 0.144139 | 0.3545475 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018450 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018300 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018200 | RBH | 0.0 | 0.0 | 0.0 |
