Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0018220 | OGI:03037560 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:14765898-14767395 | ||||||||
| Gene Symbol | GATL3, OsGATL3 | ||||||||||
| DNA seq | atggcgcgctgcgggagcgccatcgccgccgtcgcggcgctgctcgtcctgctcggcgggcacgcggcCGcgcgcatccgggtggagcactccgggatggtgatccggcggccgtcgtcgtccatcccgagcttccgggaggccccCGcgttccgcaacggcgaggagtgcggcggcggggggagggtggacgtggccatgacgctggacgccaactacctccggggcaccatggccggcgtgctgtccatcctgcagcacacggcgtgcccggagagcgtgtcgttccacttcctcgcggccgggatggacgccgacctcgcggcggcggtgcgcgccacgttcccgtacctggacctccgcgtgtaccgcttcgacccgtcccgcgtccgcggccgcatctcccgctccatccgccacgcgctcgaccagccgctcaactacgcgcgcatctacctcgccgacacgctcccgcccgacgtgcgccgcgtcatctacctcgactccgacgtggtGgtcgtcgacgacatccgcgcgctggcgtccgtcgacctcggcggccacgtcgtcggcgcgcccgagtattgccacgccaacttcaccaactacttcaccgacgcgttctggtcggacccggcgctcaacggcacgttcgccggccgccgcccgtgctacttcaacaccggcgtcatggtcatggacgtcggcaagtggcgcgccggcggctacacccgccgcgtcgagcggtggatggaggtgcagaagcagacgcggatctaccacctcggctcgctgccgccgttcctcctcgtgctcgccggtgacatccaggccgtcgaccaccgctggaaccagcacggcctcggcggcgacaacgtcaaggggcggtgccgtggcctccacccGgggcccatcagcctcctccattggagcggcaaggggaagccatggatccggctcgacgcgcggcgcccgtgcgccgtcgactacctctgggcgccgtacgacctcttccggccatcgtcgccggtgctcgaggagtgagcagcagcagcatcgagccatgcacaagctAaactgatcaatctcctactttgttcttgcagaagcttaaaagattttttttTAaaaaaaagaaagaagttggcaagaacatgatgaagaaattgatttttcttcaaaggaaaaagagaagaaattaatgtgcaatcagcaatgggtgctatgatctgtgctgctagctgctgttttggggggtctcgattgggaaattaagcaaaaatcgatgaggatatgaacgtgcgaattgcttcatgatctctttGgtttatcttgtataggacacaatgttgtaattaattttgtgaggattagtgtgaatactgggagctaggtgggggaaggaaccgacttacactgacaaatgtatgtactatactaattgtactataatatggtatactcagattttgttaatgcAaattgcaaacacagaata
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| CDS seq | atggcgcgctgcgggagcgccatcgccgccgtcgcggcgctgctcgtcctgctcggcgggcacgcggcCGcgcgcatccgggtggagcactccgggatggtgatccggcggccgtcgtcgtccatcccgagcttccgggaggccccCGcgttccgcaacggcgaggagtgcggcggcggggggagggtggacgtggccatgacgctggacgccaactacctccggggcaccatggccggcgtgctgtccatcctgcagcacacggcgtgcccggagagcgtgtcgttccacttcctcgcggccgggatggacgccgacctcgcggcggcggtgcgcgccacgttcccgtacctggacctccgcgtgtaccgcttcgacccgtcccgcgtccgcggccgcatctcccgctccatccgccacgcgctcgaccagccgctcaactacgcgcgcatctacctcgccgacacgctcccgcccgacgtgcgccgcgtcatctacctcgactccgacgtggtGgtcgtcgacgacatccgcgcgctggcgtccgtcgacctcggcggccacgtcgtcggcgcgcccgagtattgccacgccaacttcaccaactacttcaccgacgcgttctggtcggacccggcgctcaacggcacgttcgccggccgccgcccgtgctacttcaacaccggcgtcatggtcatggacgtcggcaagtggcgcgccggcggctacacccgccgcgtcgagcggtggatggaggtgcagaagcagacgcggatctaccacctcggctcgctgccgccgttcctcctcgtgctcgccggtgacatccaggccgtcgaccaccgctggaaccagcacggcctcggcggcgacaacgtcaaggggcggtgccgtggcctccacccGgggcccatcagcctcctccattggagcggcaaggggaagccatggatccggctcgacgcgcggcgcccgtgcgccgtcgactacctctgggcgccgtacgacctcttccggccatcgtcgccggtgctcgaggagtga
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| Protein seq | MARCGSAIAAVAALLVLLGGHAAARIRVEHSGMVIRRPSSSIPSFREAPAFRNGEECGGGGRVDVAMTLDANYLRGTMAGVLSILQHTACPESVSFHFLAAGMDADLAAAVRATFPYLDLRVYRFDPSRVRGRISRSIRHALDQPLNYARIYLADTLPPDVRRVIYLDSDVVVVDDIRALASVDLGGHVVGAPEYCHANFTNYFTDAFWSDPALNGTFAGRRPCYFNTGVMVMDVGKWRAGGYTRRVERWMEVQKQTRIYHLGSLPPFLLVLAGDIQAVDHRWNQHGLGGDNVKGRCRGLHPGPISLLHWSGKGKPWIRLDARRPCAVDYLWAPYDLFRPSSPVLEE |
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| Function | Probable galacturonosyltransferase-like 4 [UniProtKB/Swiss-Prot:Q9M8J2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0018220 | OsLima_03g0018220.01 | Chr03 | 14765898 | 14767395 | + | NAM | ||
| CDS seq | atggcgcgctgcgggagcgccatcgccgccgtcgcggcgctgctcgtcctgctcggcgggcacgcggcCGcgcgcatccgggtggagcactccgggatggtgatccggcggccgtcgtcgtccatcccgagcttccgggaggccccCGcgttccgcaacggcgaggagtgcggcggcggggggagggtggacgtggccatgacgctggacgccaactacctccggggcaccatggccggcgtgctgtccatcctgcagcacacggcgtgcccggagagcgtgtcgttccacttcctcgcggccgggatggacgccgacctcgcggcggcggtgcgcgccacgttcccgtacctggacctccgcgtgtaccgcttcgacccgtcccgcgtccgcggccgcatctcccgctccatccgccacgcgctcgaccagccgctcaactacgcgcgcatctacctcgccgacacgctcccgcccgacgtgcgccgcgtcatctacctcgactccgacgtggtGgtcgtcgacgacatccgcgcgctggcgtccgtcgacctcggcggccacgtcgtcggcgcgcccgagtattgccacgccaacttcaccaactacttcaccgacgcgttctggtcggacccggcgctcaacggcacgttcgccggccgccgcccgtgctacttcaacaccggcgtcatggtcatggacgtcggcaagtggcgcgccggcggctacacccgccgcgtcgagcggtggatggaggtgcagaagcagacgcggatctaccacctcggctcgctgccgccgttcctcctcgtgctcgccggtgacatccaggccgtcgaccaccgctggaaccagcacggcctcggcggcgacaacgtcaaggggcggtgccgtggcctccacccGgggcccatcagcctcctccattggagcggcaaggggaagccatggatccggctcgacgcgcggcgcccgtgcgccgtcgactacctctgggcgccgtacgacctcttccggccatcgtcgccggtgctcgaggagtga
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| Protein seq | MARCGSAIAAVAALLVLLGGHAAARIRVEHSGMVIRRPSSSIPSFREAPAFRNGEECGGGGRVDVAMTLDANYLRGTMAGVLSILQHTACPESVSFHFLAAGMDADLAAAVRATFPYLDLRVYRFDPSRVRGRISRSIRHALDQPLNYARIYLADTLPPDVRRVIYLDSDVVVVDDIRALASVDLGGHVVGAPEYCHANFTNYFTDAFWSDPALNGTFAGRRPCYFNTGVMVMDVGKWRAGGYTRRVERWMEVQKQTRIYHLGSLPPFLLVLAGDIQAVDHRWNQHGLGGDNVKGRCRGLHPGPISLLHWSGKGKPWIRLDARRPCAVDYLWAPYDLFRPSSPVLEE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0359600 | RBH | 0.0 | 0.0 | 1.025476 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g24510 | RBH | 0.0 | 0.0 | 0.515762 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0359600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0018490 | RBH | 0.0 | 0.0 | 2.751902 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0018310 | RBH | 0.0 | 0.609641 | 1.964932 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0018350 | RBH | 0.0 | 1.577743 | 4.845847 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0018380 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0018150 | RBH | 0.0 | 1.777281 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0232600 | RBH | 0.067343 | 0.129343 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017980 | RBH | 0.0 | 0.0 | 2.072333 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0233200 | RBH | 0.0621395 | 0.00862 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0025380 | RBH | 0.0 | 0.015465 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0018230 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0018320 | RBH | 0.0 | 4.215116 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0018160 | RBH | 0.0 | 0.0 | 0.461033 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0018070 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G018070 | RBH | 0.0 | 0.0 | 0.711108 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018030 | RBH | 0.0 | 0.0 | 5.162750 |
