Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0017550 | OGI:03034890 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:13688046-13690984 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agagcgataagatatcaagtgaagttTTGttataacggcagcgatacttcgctcccaataattccggagcatctatcacacacaaaattgataacatcgaatgagggaaagaggatgggagggcaatttcatagttcaggactgctcttgtcttcaggaactaggaatctaggtgttttttttaactctgcttccaacaacactaatcagaaagatcagccatgcaagtaggcaaaccgatcactcagtcgctgtcctcggtcttggacttcttCtttttcttcttcccttcagtggccgtcttaggctcagcgtcctccgagacttcacggttcttcttcttcttcttcttgggagtaccgttctcttcggcgtcgccattggcatgcgccacgctcttctcctgctcctgtggctcctcctccagcttgtgcttcttcttctttttcttcttctcagttccaggctcagcttcatcagccaaattggaaggcttgtccaggtccattgcttcgcggtcagcttcagctttagacttctttttcttacttttcttggcagatgcatcgaccttctcgccatctgcacaatgcacagtttataaatgatagtaacatgtagctcaatgttagcaTttctggcaaccgaagttagccaacttaccatcaacatcatttgtggcatcattaaccatgctgtctatcgcagctttcatcacatcaaggtttttacgaggtgcaacacccttgtcatagaagtctaaccgctcctcaacttgctcacgaagcttttgcccaaagactgcggtagctgactctgaattccaaaatatggcaacaagttctttcagcaaaagcagtaactagtggacatacaaattggaaacagaactatgcaactaacctgaataacaatcaatgcgtgatgcaatggagcacttgttcgccagatatctagccattctgcctttgttcttggttgaagcacggccaatgaaggatgagtggaatataaggccatactttggcgtattccccctagttttcaatgccctgggagaaagtaaagaagcataagaagttgacgtatactctatgatcagtactttgaaacaactttccatacagttacttggaatttgagagctaccaagaaatcagtcagttttaacaacctgaaaagtgccttttcagcaccaagtatctggagagtggaggcaggacacttagcaaggtttgaaagactgccagcatgagagataagacgtgctccaacaacttcaccaattaatgatgttagatttggtgcaatatcattcatcttggtaacaagatactcataaaggtttttacgatattcagacagattcatgactctttgagcaaactgcttcacattcatcaaatcaacttctgacagatcctgacctgaaaagcgaaaggatcaataaaccacaaaaactactacaaagaaactactagaTttatattacaacggaagttaaatgtaatcatatctcattacccattgaagcctttgctgcttcgacaacttcttttgccttatcttcatctccaatcagatcagctaacttcgaaatatctttttccgccaactcagatttgtcctttatataatcagcaagcttagcatagatgtagttgtcattgacaattttgaccaactcaggaaaatgccatccaaaccattccctgtaaaatggacaaggtaagagagcaatcaatattcaccggagcattaagctactaccaaggtacccagtaatatgccctaaagtacccaatgtctcaatcataactgatggcccaaacaccattgtgtggtgaatcaatagaacaatcatgcatgtccacaaCaaaaaaaaaatgcatcatattaacccaaaacacggaagaagaaaccagacctcactctcatggagaaagaattgatgtccttgtcaagtgtatccaacaggaagatagcctgaatcaccatgttgtcaacgcggttcacattgaacttcaccttcgccctgctgtagctatgacccaggccaagctgcgccttctccaagtccgatttctaaagtaaatcacacaaaaccagaataagcaaacgggtgtacatacattttttctttacgagattttgaacttaagcacacatacgagatttttctttgtaacttatgcccaacgcatgcatttttctttgaacaaacaaacgcccacatatgcattctagtcgctatgctatcaagcaaacgaagcaaataaatcgttatatgctactagtaagagggtttgtggtgataaagcggaatcgtttatcaccttgagctcgctgatgaagcggtcgaagtggaggcggacgccgcggagaagctcctggacgaactcgttgctctggcacgggatgccggtgacctcggagatgtgggagccgaccttgggctcgacgacgccgaggctgtacttggccttcttcccctccttgggcttgggcaggttcagctccaggaagctcctcagctcgtcggtcatgatccctgcacgcggaatggcgtcagaaaaaaaacaaaaaaaaggagaagaagcacgaatcccgcctgagctggcggcggcggcgcaagaacgcgagaggaccttcggagatggcgttgcactggttgagggcgtccacggcggaggagaagggggtgaaggcggcgagcttgacggccttgccgaagcggtcgaggtcgacgacggaggcgcggacggcgtccacgctctgcccgatctcgtcgatgccgtaggcgtggaagaggccgtagccggacgccgactcgaagagcaggtacagcgccatctcgccggcggcgtcggcggcggcggcgggttgaggtttgggggcggcggcggaaggggggttagggttttaggggagcgagggga
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| CDS seq | atggcgctgtacctgctcttcgagtcggcgtccggctacggcctcttccacgcctacggcatcgacgagatcgggcagagcgtggacgccgtccgcgcctccgtcgtcgacctcgaccgcttcggcaaggccgtcaagctcgccgccttcacccccttctcctccgccgtggacgccctcaaccagtgcaacgccatctccgaagggatcatgaccgacgagctgaggagcttcctggagctgaacctgcccaagcccaaggaggggaagaaggccaagtacagcctcggcgtcgtcgagcccaaggtcggctcccacatctccgaggtcaccggcatcccgtgccagagcaacgagttcgtccaggagcttctccgcggcgtccgcctccacttcgaccgcttcatcagcgagctcaagaaatcggacttggagaaggcgcagcttggcctgggtcatagctacagcagggcgaaggtgaagttcaatgtgaaccgcgttgacaacatggtgattcaggctatcttcctgttggatacacttgacaaggacatcaattctttctccatgagagtgagggaatggtttggatggcattttcctgagttggtcaaaattgtcaatgacaactacatctatgctaagcttgctgattatataaaggacaaatctgagttggcggaaaaagatatttcgaagttagctgatctgattggagatgaagataaggcaaaagaagttgtcgaagcagcaaaggcttcaatgggtcaggatctgtcagaagttgatttgatgaatgtgaagcagtttgctcaaagagtcatgaatctgtctgaatatcgtaaaaacctttatgagtatcttgttaccaagatgaatgatattgcaccaaatctaacatcattaattggtgaagttgttggagcacgtcttatctctcatgctggcagtctttcaaaccttgctaagtgtcctgcctccactctccagatacttggtgctgaaaaggcacttttcagggcattgaaaactagggggaatacgccaaagtatggccttatattccactcatccttcattggccgtgcttcaaccaagaacaaaggcagaatggctagatatctggcgaacaagtgctccattgcatcacgcattgattgttattcagagtcagctaccgcagtctttgggcaaaagcttcgtgagcaagttgaggagcggttagacttctatgacaagggtgttgcacctcgtaaaaaccttgatgtgatgaaagctgcgatagacagcatggttaatgatgccacaaatgatgttgatgatggcgagaaggtcgatgcatctgccaagaaaagtaagaaaaagaagtctaaagctgaagctgaccgcgaagcaatggacctggacaagccttccaatttggctgatgaagctgagcctggaactgagaagaagaaaaagaagaagaagcacaagctggaggaggagccacaggagcaggagaagagcgtggcgcatgccaatggcgacgccgaagagaacggtactcccaagaagaagaagaagaagaaccgtgaagtctcggaggacgctgagcctaagacggccactgaagggaagaagaaaaaGaagaagtccaagaccgaggacagcgactga
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| Protein seq | MALYLLFESASGYGLFHAYGIDEIGQSVDAVRASVVDLDRFGKAVKLAAFTPFSSAVDALNQCNAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFVQELLRGVRLHFDRFISELKKSDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWFGWHFPELVKIVNDNYIYAKLADYIKDKSELAEKDISKLADLIGDEDKAKEVVEAAKASMGQDLSEVDLMNVKQFAQRVMNLSEYRKNLYEYLVTKMNDIAPNLTSLIGEVVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSESATAVFGQKLREQVEERLDFYDKGVAPRKNLDVMKAAIDSMVNDATNDVDDGEKVDASAKKSKKKKSKAEADREAMDLDKPSNLADEAEPGTEKKKKKKKHKLEEEPQEQEKSVAHANGDAEENGTPKKKKKKNREVSEDAEPKTATEGKKKKKKSKTEDSD |
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| Function | Nucleolar protein 56 [UniProtKB/Swiss-Prot:O00567] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0017550 | OsLima_03g0017550.01 | Chr03 | 13688046 | 13690984 | - | NAM | ||
| CDS seq | atggcgctgtacctgctcttcgagtcggcgtccggctacggcctcttccacgcctacggcatcgacgagatcgggcagagcgtggacgccgtccgcgcctccgtcgtcgacctcgaccgcttcggcaaggccgtcaagctcgccgccttcacccccttctcctccgccgtggacgccctcaaccagtgcaacgccatctccgaagggatcatgaccgacgagctgaggagcttcctggagctgaacctgcccaagcccaaggaggggaagaaggccaagtacagcctcggcgtcgtcgagcccaaggtcggctcccacatctccgaggtcaccggcatcccgtgccagagcaacgagttcgtccaggagcttctccgcggcgtccgcctccacttcgaccgcttcatcagcgagctcaagaaatcggacttggagaaggcgcagcttggcctgggtcatagctacagcagggcgaaggtgaagttcaatgtgaaccgcgttgacaacatggtgattcaggctatcttcctgttggatacacttgacaaggacatcaattctttctccatgagagtgagggaatggtttggatggcattttcctgagttggtcaaaattgtcaatgacaactacatctatgctaagcttgctgattatataaaggacaaatctgagttggcggaaaaagatatttcgaagttagctgatctgattggagatgaagataaggcaaaagaagttgtcgaagcagcaaaggcttcaatgggtcaggatctgtcagaagttgatttgatgaatgtgaagcagtttgctcaaagagtcatgaatctgtctgaatatcgtaaaaacctttatgagtatcttgttaccaagatgaatgatattgcaccaaatctaacatcattaattggtgaagttgttggagcacgtcttatctctcatgctggcagtctttcaaaccttgctaagtgtcctgcctccactctccagatacttggtgctgaaaaggcacttttcagggcattgaaaactagggggaatacgccaaagtatggccttatattccactcatccttcattggccgtgcttcaaccaagaacaaaggcagaatggctagatatctggcgaacaagtgctccattgcatcacgcattgattgttattcagagtcagctaccgcagtctttgggcaaaagcttcgtgagcaagttgaggagcggttagacttctatgacaagggtgttgcacctcgtaaaaaccttgatgtgatgaaagctgcgatagacagcatggttaatgatgccacaaatgatgttgatgatggcgagaaggtcgatgcatctgccaagaaaagtaagaaaaagaagtctaaagctgaagctgaccgcgaagcaatggacctggacaagccttccaatttggctgatgaagctgagcctggaactgagaagaagaaaaagaagaagaagcacaagctggaggaggagccacaggagcaggagaagagcgtggcgcatgccaatggcgacgccgaagagaacggtactcccaagaagaagaagaagaagaaccgtgaagtctcggaggacgctgagcctaagacggccactgaagggaagaagaaaaaGaagaagtccaagaccgaggacagcgactga
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| Protein seq | MALYLLFESASGYGLFHAYGIDEIGQSVDAVRASVVDLDRFGKAVKLAAFTPFSSAVDALNQCNAISEGIMTDELRSFLELNLPKPKEGKKAKYSLGVVEPKVGSHISEVTGIPCQSNEFVQELLRGVRLHFDRFISELKKSDLEKAQLGLGHSYSRAKVKFNVNRVDNMVIQAIFLLDTLDKDINSFSMRVREWFGWHFPELVKIVNDNYIYAKLADYIKDKSELAEKDISKLADLIGDEDKAKEVVEAAKASMGQDLSEVDLMNVKQFAQRVMNLSEYRKNLYEYLVTKMNDIAPNLTSLIGEVVGARLISHAGSLSNLAKCPASTLQILGAEKALFRALKTRGNTPKYGLIFHSSFIGRASTKNKGRMARYLANKCSIASRIDCYSESATAVFGQKLREQVEERLDFYDKGVAPRKNLDVMKAAIDSMVNDATNDVDDGEKVDASAKKSKKKKSKAEADREAMDLDKPSNLADEAEPGTEKKKKKKKHKLEEEPQEQEKSVAHANGDAEENGTPKKKKKKNREVSEDAEPKTATEGKKKKKKSKTEDSD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.395135 | 0.699102 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0352300 | RBH | 9.071494 | 9.578081 | 18.813564 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22880 | RBH | 5.487688 | 5.778669 | 4.135401 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0352300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017830 | RBH | 1.909947 | 18.594683 | 12.751359 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0017660 | RBH | 0.193842 | 14.674115 | 5.753969 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017670 | RBH | 3.220183 | 30.889784 | 20.288656 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017680 | RBH | 0.466571 | 1.795820 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017460 | RBH | 8.947316 | 65.103615 | 32.869781 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0217100 | RBH | 29.048476 | 47.8624325 | 35.6905875 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017310 | RBH | 1.660867 | 3.808079 | 2.994960 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0221700 | RBH | 24.61108 | 33.837767 | 106.360645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0026200 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017570 | RBH | 1.160278 | 65.055046 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017630 | RBH | 12.976271 | 59.163239 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017510 | RBH | 1.745131 | 6.659729 | 2.654446 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0017410 | RBH | 0.526571 | 27.953690 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G017400 | RBH | 1.002576 | 30.691319 | 7.120027 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0017370 | RBH | 3.291400 | 49.298130 | 25.642963 |
