Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0017430 | OGI:03034660 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:13576638-13580705 | ||||||||
| Gene Symbol | BIP101 | ||||||||||
| DNA seq | agggaagtaagaacctgaaagaccttaacagccattgcaatattgcacgaacaagaccctcccggccaaaaggaccaaaaatttcagttcacatagaacgagcaagcacgacatgtttccctattccaaaatttagtactaggtgcttcaatacagttccactagtaaacaagtctcaagtctcaacagtggtgcctatactatggctaacaggcatggaacagacccggcatgttccattttacagaacagcgagttttcaacccaatgctacccaagattgtctttctccagtgtatccctcattcatcaccatgctttttcttctttttctttttgtctttcttaccagacgcttcggtttccatggcaacatcctcagcatcttgtgaatcagatttcttctttttcttcttctccttctcaccttcagcggtggctacaggtggctcctcgctctccttggacttctttttctttttcttgccgccatcagcatcggccacaggagaatcctcgctatctttggacttctttttcttctttttcttctgaccctcttggtcaccatcctcttgaatggtttcctctgcacctgcaggctccgcctctcgatgtttcctcttctttgaagcaccttcaggcttctttggtgtttcttcagtggattgtccaagtaccagatcagccgcaggattgtatgtctgacaaattcaggtgccataatcaggttgagatgaattctgaattagatgtttgcccaagtaaaagtaagcaaaatacacaagacagcttttacagtgactggacaaaacgttaggtgcaacgcagtctcaaaaattagtaagtttcttgaagagtggccaagattaacagaaaacattaagcttcctcaatatattttcaagacaaaaatcaagatactacctaccttggcaggagtgattaaagccccagcacccttcttccggtccttttcatacacttctatcttgggctttcccttagtagaacctgcagacctgccaagttctttaccctcaagaacccgaagccgtgtctcaagctgcccaaatggatctcatgtcaatccaaggagtcagacaatattatggataaagaaaaggtatttcagaaagtacataccttgactcgactctcaagaccaatggagttatcttcaccatcaccaagggcatcataccgaatggcaagagcagtttttgcagcaagagaacgagaaatcttccccttgtgctttggagctgcttgaccaattaaggatgcatggtagatgagaccatactttggcgtagcatgctttgtctttagagctctgaacaaagcctggagggaaagattgtgttacttattatttgtgggaaacaaattataatacaccgcaaaaagctactccctccgtcccataatatagcaacctagtacaggatgggggcatatcctagcattagggaccaagtacaggatgtgtgaaacatattatctcccagacatagactgaaatataagatcaaacaaagtaaaatcacaaacaccatacatgaagcatcctttccccatgttactagaaaacaaacccatacttccatttacctattttgcatcaagtaatctgagtggaaaatggttaaatctttcaagaataacaaatagcaactgaccttctctgcaccaagtatctgaattgtgctgccaggctgcttggccagatttaccaaactgccgccatgtgcaataagtcgagcaccaaccaattcgccaacaagtgcagtcaaatttcgtgcgatagtgttcatcctgcttctcagataatcaaacagctgggctctgtactcagaaagagccaacacctgatcacacagctccctgatatttagcaagtcaagttcactaacttctgttcccatggatattactgccgcctcttttagctgtgcttcaacctcatcatctgaaagtatctgaaaatagcatttgcttcttaataaagaaccagttgtggtggatactcatggccattacattctgatcacaaatgtgcagaatttacctcagagaaatcaaggctttctgcattagtccgatcacccatcatcttcacaacttttgcgtactgtatgttatcagatacaattttagtgagctctggaaagtgccacccataccattcacgaaccctcatggcataagtgttaagctccttgtcaagatcatccaataagccaatggcctgaatgatcatagtatcaacctgtataatcagaaacaatatagtgtttacctcagttaccgtcccatgaaggggttatgtacaaattaaaaatagtaagacctcttgtatatccatttgatgctgaactaaataattgcaggtgcgagttattcgttataaagttaacagaaacataagagtaacaaattgagcatgaaaactaacaaaaggaaaatgattgaatcatatgactcagagccagggagaagtactgaataacatgttcaataaaagcgaacggtaggataaataaaagctcaccttttcaggactgaacttcagcttatatctagacaaactgtgggacaagccaaggctcattggaccaaggtcttgtgcacccaaaccagagataagttcagtgagctggtttcttaaccctctcatgagctccatcacagcactattatgaaggcagtcgattttctgcaaaagcacgtcaaattataagcatgattggttgttctacataaacaaaacaaccaaggagcctaactaaccagcttctcctttatagcatttccaagtttagagtcagctacagctaatgtttcaCcctcacagtgcttctgcaagaacttgcgcaaacccttggtaggcttgctgtcaataatgagggttgcagcagaaagggcatcagatgtgttctcaaacttgttgaaagccttcagctcaaccacctaaatatagttgatttgttttgtcaggaaagaaaatcaactgaaaagaacaaaataaatagcagtaataggaacaaatggatagactcattgcaattcagcgtaaagtaacatgacttctgtacatgacaatgttctccacataatgtcataaactcaatgtgcacaaatttatttgtcgaatcaatctataggcatcggacggacagaatatgtgcacaataggaggcaaactaaaccattacatctctctcccctgataaccataacacattggaaaggaaattacagttcagaacatggtaggattagtcagttttttttttttgtttctcgaaaaccactttgcatctatcaaaatcatatccccaattagcaaggcgaaatcagctaagctaaaacatatgtagtactcaccaacctacagaagccattggtccttgtgctaatttaactgactccatcgacatgtgtcaaatcatgcattaacgctcttaataaacaaaaaaaaaaagagaaaattttgtgctgtaaggaagaaaagcacaaacctttctcgccgagtcagacgtcgtgaactccttccataaatcctaaaaaaaaacaacacaaaatgcgttagcacgattagtccacttaacactccatagaaagtcaaaccaacagctgaagcggcggcggcggcggaagactcacctcgaccttgtcgagcttcccctcgtcgagcaccttgaagagggcgaaccccgcgggcgtctcgaacagcaccagcatctctctcaccgcccgtgtcccgcaactaccagataaCccccccaccaaatcaaaaccccaacctcaaacctccacgctcaaaccgagcagcagcagcagcAAaaaaaaaaaaaaggatggcgcgcgcaaaccttgggtcgattcgattcgacgacgggagaggaaagcgcgaggcgtacgttcccggctgcggtgagacggggatggagaggagatggCGCcgccgccgccgccgccgccgcggcgagggtttagcgcgaggagttcggctgcggcgaggcGggggagaggggagagggagagagccggcgccgcaagggt
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| CDS seq | atgctggtgctgttcgagacgcccgcggggttcgccctcttcaaggtgctcgacgaggggaagctcgacaaggtcgaggatttatggaaggagttcacgacgtctgactcggcgagaaaggtggttgagctgaaggctttcaacaagtttgagaacacatctgatgccctttctgctgcaaccctcattattgacagcaagcctaccaagggtttgcgcaagttcttgcagaagcactgtgaggGtgaaacattagctgtagctgactctaaacttggaaatgctataaaggagaagctgaaaatcgactgccttcataatagtgctgtgatggagctcatgagagggttaagaaaccagctcactgaacttatctctggtttgggtgcacaagaccttggtccaatgagccttggcttgtcccacagtttgtctagatataagctgaagttcagtcctgaaaaggttgatactatgatcattcaggccattggcttattggatgatcttgacaaggagcttaacacttatgccatgagggttcgtgaatggtatgggtggcactttccagagctcactaaaattgtatctgataacatacagtacgcaaaagttgtgaagatgatgggtgatcggactaatgcagaaagccttgatttctctgagatactttcagatgatgaggttgaagcacagctaaaagaggcggcagtaatatccatgggaacagaagttagtgaacttgacttgctaaatatcagggagctgtgtgatcaggtgttggctctttctgagtacagagcccagctgtttgattatctgagaagcaggatgaacactatcgcacgaaatttgactgcacttgttggcgaattggttggtgctcgacttattgcacatggcggcagtttggtaaatctggccaagcagcctggcagcacaattcagatacttggtgcagagaaggctttgttcagagctctaaagacaaagcatgctacgccaaagtatggtctcatctaccatgcatccttaattggtcaagcagctccaaagcacaaggggaagatttctcgttctcttgctgcaaaaactgctcttgccattcggtatgatgcccttggtgatggtgaagataactccattggtcttgagagtcgagtcaagcttgagacacggcttcgggttcttgagggtaaagaacttggcaggtctgcaggttctactaagggaaagcccaagatagaagtgtatgaaaaggaccggaagaagggtgctggggctttaatcactcctgccaagacatacaatcctgcggctgatctggtacttggacaatccactgaagaaacaccaaagaagcctgaaggtgcttcaaagaagaggaaacatcgagaggcggagcctgcaggtgcagaggaaaccattcaagaggatggtgaccaagagggtcagaagaaaaagaagaaaaagaagtccaaagatagcgaggattctcctgtggccgatgctgatggcggcaagaaaaagaaaaagaagtccaaggagagcgaggagccacctgtagccaccgctgaaggtgagaaggagaagaagaaaaagaagaaatctgattcacaagatgctgaggatgttgccatggaaaccgaagcgtctggtaagaaagacaaaaagaaaaagaagaaaaagcatggtgatgaatga
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| Protein seq | MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVSDNIQYAKVVKMMGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLALSEYRAQLFDYLRSRMNTIARNLTALVGELVGARLIAHGGSLVNLAKQPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIGLESRVKLETRLRVLEGKELGRSAGSTKGKPKIEVYEKDRKKGAGALITPAKTYNPAADLVLGQSTEETPKKPEGASKKRKHREAEPAGAEETIQEDGDQEGQKKKKKKKSKDSEDSPVADADGGKKKKKKSKESEEPPVATAEGEKEKKKKKKSDSQDAEDVAMETEASGKKDKKKKKKKHGDE |
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| Function | Probable nucleolar protein 5-2 [UniProtKB/Swiss-Prot:Q9MAB3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0017430 | OsLima_03g0017430.01 | Chr03 | 13576641 | 13580705 | - | NAM | ||
| CDS seq | atgctggtgctgttcgagacgcccgcggggttcgccctcttcaaggtgctcgacgaggggaagctcgacaaggtcgaggatttatggaaggagttcacgacgtctgactcggcgagaaaggtggttgagctgaaggctttcaacaagtttgagaacacatctgatgccctttctgctgcaaccctcattattgacagcaagcctaccaagggtttgcgcaagttcttgcagaagcactgtgaggGtgaaacattagctgtagctgactctaaacttggaaatgctataaaggagaagctgaaaatcgactgccttcataatagtgctgtgatggagctcatgagagggttaagaaaccagctcactgaacttatctctggtttgggtgcacaagaccttggtccaatgagccttggcttgtcccacagtttgtctagatataagctgaagttcagtcctgaaaaggttgatactatgatcattcaggccattggcttattggatgatcttgacaaggagcttaacacttatgccatgagggttcgtgaatggtatgggtggcactttccagagctcactaaaattgtatctgataacatacagtacgcaaaagttgtgaagatgatgggtgatcggactaatgcagaaagccttgatttctctgagatactttcagatgatgaggttgaagcacagctaaaagaggcggcagtaatatccatgggaacagaagttagtgaacttgacttgctaaatatcagggagctgtgtgatcaggtgttggctctttctgagtacagagcccagctgtttgattatctgagaagcaggatgaacactatcgcacgaaatttgactgcacttgttggcgaattggttggtgctcgacttattgcacatggcggcagtttggtaaatctggccaagcagcctggcagcacaattcagatacttggtgcagagaaggctttgttcagagctctaaagacaaagcatgctacgccaaagtatggtctcatctaccatgcatccttaattggtcaagcagctccaaagcacaaggggaagatttctcgttctcttgctgcaaaaactgctcttgccattcggtatgatgcccttggtgatggtgaagataactccattggtcttgagagtcgagtcaagcttgagacacggcttcgggttcttgagggtaaagaacttggcaggtctgcaggttctactaagggaaagcccaagatagaagtgtatgaaaaggaccggaagaagggtgctggggctttaatcactcctgccaagacatacaatcctgcggctgatctggtacttggacaatccactgaagaaacaccaaagaagcctgaaggtgcttcaaagaagaggaaacatcgagaggcggagcctgcaggtgcagaggaaaccattcaagaggatggtgaccaagagggtcagaagaaaaagaagaaaaagaagtccaaagatagcgaggattctcctgtggccgatgctgatggcggcaagaaaaagaaaaagaagtccaaggagagcgaggagccacctgtagccaccgctgaaggtgagaaggagaagaagaaaaagaagaaatctgattcacaagatgctgaggatgttgccatggaaaccgaagcgtctggtaagaaagacaaaaagaaaaagaagaaaaagcatggtgatgaatga
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| Protein seq | MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVSDNIQYAKVVKMMGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLALSEYRAQLFDYLRSRMNTIARNLTALVGELVGARLIAHGGSLVNLAKQPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIGLESRVKLETRLRVLEGKELGRSAGSTKGKPKIEVYEKDRKKGAGALITPAKTYNPAADLVLGQSTEETPKKPEGASKKRKHREAEPAGAEETIQEDGDQEGQKKKKKKKSKDSEDSPVADADGGKKKKKKSKESEEPPVATAEGEKEKKKKKKSDSQDAEDVAMETEASGKKDKKKKKKKHGDE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0017430 | OsLima_03g0017430.02 | Chr03 | 13576638 | 13580699 | - | NAM | ||
| CDS seq | atgctggtgctgttcgagacgcccgcggggttcgccctcttcaaggtgctcgacgaggggaagctcgacaaggtcgaggatttatggaaggagttcacgacgtctgactcggcgagaaaggtggttgagctgaaggctttcaacaagtttgagaacacatctgatgccctttctgctgcaaccctcattattgacagcaagcctaccaagggtttgcgcaagttcttgcagaagcactgtgaggGtgaaacattagctgtagctgactctaaacttggaaatgctataaaggagaagctgaaaatcgactgccttcataatagtgctgtgatggagctcatgagagggttaagaaaccagctcactgaacttatctctggtttgggtgcacaagaccttggtccaatgagccttggcttgtcccacagtttgtctagatataagctgaagttcagtcctgaaaaggttgatactatgatcattcaggccattggcttattggatgatcttgacaaggagcttaacacttatgccatgagggttcgtgaatggtatgggtggcactttccagagctcactaaaattgtatctgataacatacagtacgcaaaagttgtgaagatgatgggtgatcggactaatgcagaaagccttgatttctctgagatactttcagatgatgaggttgaagcacagctaaaagaggcggcagtaatatccatgggaacagaagttagtgaacttgacttgctaaatatcagggagctgtgtgatcaggtgttggctctttctgagtacagagcccagctgtttgattatctgagaagcaggatgaacactatcgcacgaaatttgactgcacttgttggcgaattggttggtgctcgacttattgcacatggcggcagtttggtaaatctggccaagcagcctggcagcacaattcagatacttggtgcagagaaggctttgttcagagctctaaagacaaagcatgctacgccaaagtatggtctcatctaccatgcatccttaattggtcaagcagctccaaagcacaaggggaagatttctcgttctcttgctgcaaaaactgctcttgccattcggtatgatgcccttggtgatggtgaagataactccattggtcttgagagtcgagtcaagcttgagacacggcttcgggttcttgagggtaaagaacttggcaggtgcagaggaaaccattcaagaggatggtga
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| Protein seq | MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFENTSDALSAATLIIDSKPTKGLRKFLQKHCEGETLAVADSKLGNAIKEKLKIDCLHNSAVMELMRGLRNQLTELISGLGAQDLGPMSLGLSHSLSRYKLKFSPEKVDTMIIQAIGLLDDLDKELNTYAMRVREWYGWHFPELTKIVSDNIQYAKVVKMMGDRTNAESLDFSEILSDDEVEAQLKEAAVISMGTEVSELDLLNIRELCDQVLALSEYRAQLFDYLRSRMNTIARNLTALVGELVGARLIAHGGSLVNLAKQPGSTIQILGAEKALFRALKTKHATPKYGLIYHASLIGQAAPKHKGKISRSLAAKTALAIRYDALGDGEDNSIGLESRVKLETRLRVLEGKELGRCRGNHSRGW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.098963 | 0.437902 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0350100 | RBH | 6.613589 | 6.788541 | 13.566663 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22730 | RBH | 5.292377 | 4.820048 | 3.934961 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0350100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017720 | RBH | 1.565234 | 11.970404 | 7.575123 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0017550 | RBH | 0.250420 | 11.148376 | 7.111909 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017560 | RBH | 4.216803 | 24.164133 | 20.627104 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017570 | RBH | 0.280277 | 1.729291 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017350 | RBH | 9.789142 | 57.403458 | 29.087866 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0215500 | RBH | 33.137274 | 76.631111 | 38.72077 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0017200 | RBH | 0.759613 | 2.509727 | 2.084540 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0220000 | RBH | 14.4612155 | 51.590471 | 62.7298735 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0017440 | RBH | 0.312660 | 1.048256 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017460 | RBH | 0.772996 | 35.879738 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017530 | SBH | 7.556319 | 80.780380 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017400 | RBH | 3.542676 | 6.931700 | 3.446395 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0017300 | RBH | 0.490408 | 21.144945 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G017290 | SBH | 2.516196 | 51.435905 | 14.120393 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0017250 | RBH | 5.674958 | 58.009602 | 17.213095 |
