Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0017140 | OGI:03034110 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:13274280-13278810 | ||||||||
| Gene Symbol | FUG1, OsFUG1 | ||||||||||
| DNA seq | gcatttgtttaacttgtggatgccgggtacaacctttcctcttttctggcatgcaccagagcatgccaatccccaccagctaccaaagcactacaagaacaatcaaatgagcagcaaatggtaagtatcagtagcactacggctaggctcctaaaagttaaactcttcagatacagattgttcaaccgagcgcaaagattctcttccccctcttgttctttctgccaactgaatcaccaaaaacaacggaactttacagaaatctggtgttatcaacatacaggtttacatactgacaaaactccagcttctcactggaaaaatatatttcctatctttgccggcaacttccaacaatgtatacacgattgacaatttagtctacgaatatcaacctaagttaatcagctgttcaccaaaaggAaaaggatccatatttgattagtcagctcttaatcttaagatttccatcactgttctctttctgaaatattccatgttttcctgcagttccaaaacaaaccacactgataagcatgattatgtaaaatcacctcgagaaattgtgaaacaagcttatgtactcacacgagaaatttacataatgaagtctacaacacatgctaagtccaaattgttaaggcactagcccagaggcagaggatattctgctcaaatttcttaaatgaatccaactcacctgactaaaagacatgctcaatcctctgctgtggaaatcaatgtacttgagcataaacataccacagtcccacctgttcaaatatacgatgcttgtgtcaactaaaactatattgttgtccatcgtaacatgttcatgaatgtgccaatgcttatgttacaaaatgaattcttcatatggccatccaaccaaacatggattAaaaaaacatacagaaaaccgctgaaggtttaacacatgataatacctaacaaatcatggttcaagctattgaaagtgattgtgttccataatactgaatttatgcaggaaataatcattagcacatgcaatacatacccattttgctgcaaaggaatatcatcaactaactcttcgtgccaagtgtttgtgtcgatctctttattactcttgtccttcacttcctctgcaatatatctagcctgtgagtggcatgcacaataaaatacaggtaagcccactcaaatctgtaactgcaagtatttgatggattaaacaagcttagcaacacattaatgaaacaccgaaataactacgaacatgcaaattcccctagagcataacacatttaacaaccttttttttaaaaaaaataaaatgccatgcaggAaatagcaatagaagggggtactactttttgagtgccccagttgtattttttctctacagctataagtttaccagcactcttggtacatgatgatccacacaaccaagagaatcaaggtattggaatgtcctttctttcatgtttataactgctaagcaccaatggacatctttatgtacagggacaaagatctgcaaagtaaattctgaggataagtttataattacaaataagcatgttccaacatccgtgacaacagaaggactaagaatgcaacagatactttactttatcacactcaataagctcataacccaacctcctgcgggtagtccatcttttaacagatttgtagtcatagccattttttccgcaagcaagctgaaccaaacgaccaacaattcagggagtcaatgaagattagcatttacttggtgatcagcaattcagcattcacaaatgaaaatgaaatggtaaaattcataataaaaggatatcaaatgagtggatgaaggcaaatgaagaacttcctagaatttcccatccctaaccaaacaggccaacacaatactgccccccaaAGagaagaagtaatggtattttgcgaagctaacacttGggtggcatttctccaaacatcatcctttggaatggagtgatattttagaaatcttcaatgaacaatgaagcaaggataaactgAaaacataaaactgtctaccatttccacaacaaatgtctcgaataagtgataacaaaacttaagaaaaccaaaaaagcaaatggagaactaagccctccgtttagaactgtatcctgttgtcgtatgactgaagtcaaacatatgctgctattgactgttcctagagtaaatatagggcatatcatattttaaaaaaaaaatctttaggaaaagagcttaaccattgattgctcataaattacattcgtaatatctgcgcaaccaacattttatgaaaagctctcagaaatatgaatctatcagtataattctgatacaccaaatatattTAtgatttgagtaattgttggtcagaatctataaagtttgacttttcaatatataatatgccctataattttctatggatgaattaatatatacctaaatgagccaaatgaatagcatattagttaatatgccataaacacaagctaattgagtatttgtgtccaattaaggctccaaagccagtaatgatgttaacctgagaaacccatgaagatatctggacagttattacctatatacctcctgagggaaaaactctaaaaatgtccataaattaataacaCaactgaaatataatataaatgttcctacagtgatatcatatttgaacactcataagttcattgcaccaaatccttataaaccaataatacaccagaaatgctaaaaaaagttataaagtacagagacgataagaacatttaatatgaatacgaagatagaatacgtgaaagcaaaagaagcttatgatctaaccttcttataaaaaaatgtattaaagaaatggcatttcaaaaaccTttttggttctcttgcctctctctccttcaataattcaaggtacaaattaatgacctgcatgtaagaggaatacatgccctcattacgtaagataatatgggcagggtcatcgccggtccatgtaaaccatcaatcttttttttaaaaaaaggaagtaaaccatagatactagtggagtttgtttcatatataagtatattcaagatagatagttacctcatcatttaaccaggcagtcagtctcaagcaccggaacttctctctgctaacttcaatgttggagggctcatgcagtgctaggatttcagtactgtaaggacaaaAGagtgatgatcaattgttatagcaacaaacatagaagctacaaacaacatgcagcagggtcatcaaaggtaccttgaacccctaccaaacaaacaattatgaacttcattttcctcttcagcagttagaggtgtaaagagttcagacaggtcctggagtagtgaaagatcaacatgcagaaaccgacagtgagcaaaagcataaaaggttgatatagagcaacaactaagaaaggttaatcaacaaaggaatatactttcccccaattaaactctacattcaaatgcatatcttgtgaattcgcaagcactcaaaAGGagaatcgactctagaatccacattgtgtcaagacatccttgcttgcccctctctctctttttttgacaattcaaaacatctatttagggcgagcgatactaggaagcctaaaattgtccaaactttaaacttgaaaaagttcaagaactcaattatgtagctatgccccgaagctctcattacaatgaacctccattaattcacttcaacgcaatacgcacactttaccactagtgagttgtgatcttcacattcaccaactatgaaaataatataacataaaaacaaaggaatggtaaacgtaacgatatcgatacctccttgggtggctcagccgccttccgcagctcggcgagtttctcctcttctagattcaccagtgaagcgagctcgcccagcctcttgtcgtggctcctcatcctctcgagcgcctccttgtagtacggctccctcttcacccgcggacgcggcgccgcggcctccagggcggccttcctcgggtccccgaccctccgcctcaccaccaaccgggggccaaaccccGcgtcgtcgtcttccatggcggtggccaccgagagatcccgcgaccggacgtcgacccagcccctgtacaccccgaggccggcatcgtcgtgcctaggtttaccccggaggaaggagaggaagCcccccatgtcgaacgcGGGggacgacgccgcctcgggcgggatcggcggggaggggaaggccgccgggcagaggcagaggcggcggcggcggtggcgctgcgggccgtggaagtGGGaatcgtcgaGGGggcgcttccggcggcggtgggggaggaggaagggggaggcgagggcggtcatggcgaggaggaggagggggatagggctagggctagggctagggccatgggggttgggagcatgccctaggttggcgcggCgggggtttgagcagcggaaagctccaagcgggaggggaggagagaagacgaggagactggtttaactgtaatccc
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| CDS seq | atgaccgccctcgcctcccccttcctcctcccccaccgccgccggaagcgccCCCtcgacgattCCCacttccacggcccgcagcgccaccgccgccgccgcctctgcctctgcccggcggccttcccctccccgccgatcccgcccgaggcggcgtcgtccCCCgcgttcgacatgggggGcttcctctccttcctccggggtaaacctaggcacgacgatgccggcctcggggtgtacaggggctgggtcgacgtccggtcgcgggatctctcggtggccaccgccatggaagacgacgacgCggggtttggcccccggttggtggtgaggcggagggtcggggacccgaggaaggccgccctggaggccgcggcgccgcgtccgcgggtgaagagggagccgtactacaaggaggcgctcgagaggatgaggagccacgacaagaggctgggcgagctcgcttcactggtgaatctagaagaggagaaactcgccgagctgcggaaggcggctgagccacccaaggaggacctgtctgaactctttacacctctaactgctgaagaggaaaatgaagttcataattgtttgtttggtaggggttcaagtactgaaatcctagcactgcatgagccctccaacattgaagttagcagagagaagttccggtgcttgagactgactgcctggttaaatgatgaggtcattaatttgtaccttgaattattgaaggagagagaggcaagagaaccaaaaAggtttttgaaatgccatttctttaatacatttttttataagaagcttgcttgcggaaaaaatggctatgactacaaatctgttaaaagatggactacccgcaggaggttgggttatgagcttattgagtgtgataaaatctttgtccctgtacataaagatgtccattggtgcttagcagttataaacatgaaagaaaggacattccaataccttgattctcttggttgtgtggatcatcatgtaccaagagtgctggctagatatattgcagaggaagtgaaggacaagagtaataaagagatcgacacaaacacttggcacgaagagttagttgatgatattcctttgcagcaaaatgggtgggactgtggtatgtttatgctcaagtacattgatttccacagcagaggattgagcatgtcttttagtcaggaaaacatggaatatttcagaaagagaacagtgatggaaatcttaagattaagagctgactaa
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| Protein seq | MTALASPFLLPHRRRKRPLDDSHFHGPQRHRRRRLCLCPAAFPSPPIPPEAASSPAFDMGGFLSFLRGKPRHDDAGLGVYRGWVDVRSRDLSVATAMEDDDAGFGPRLVVRRRVGDPRKAALEAAAPRPRVKREPYYKEALERMRSHDKRLGELASLVNLEEEKLAELRKAAEPPKEDLSELFTPLTAEEENEVHNCLFGRGSSTEILALHEPSNIEVSREKFRCLRLTAWLNDEVINLYLELLKEREAREPKRFLKCHFFNTFFYKKLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYLDSLGCVDHHVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFMLKYIDFHSRGLSMSFSQENMEYFRKRTVMEILRLRAD |
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| Function | Ubiquitin-like-specific protease ESD4 [UniProtKB/Swiss-Prot:Q94F30] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0017140 | OsLima_03g0017140.01 | Chr03 | 13274280 | 13278810 | - | NAM | ||
| CDS seq | atgaccgccctcgcctcccccttcctcctcccccaccgccgccggaagcgccCCCtcgacgattCCCacttccacggcccgcagcgccaccgccgccgccgcctctgcctctgcccggcggccttcccctccccgccgatcccgcccgaggcggcgtcgtccCCCgcgttcgacatgggggGcttcctctccttcctccggggtaaacctaggcacgacgatgccggcctcggggtgtacaggggctgggtcgacgtccggtcgcgggatctctcggtggccaccgccatggaagacgacgacgCggggtttggcccccggttggtggtgaggcggagggtcggggacccgaggaaggccgccctggaggccgcggcgccgcgtccgcgggtgaagagggagccgtactacaaggaggcgctcgagaggatgaggagccacgacaagaggctgggcgagctcgcttcactggtgaatctagaagaggagaaactcgccgagctgcggaaggcggctgagccacccaaggaggacctgtctgaactctttacacctctaactgctgaagaggaaaatgaagttcataattgtttgtttggtaggggttcaagtactgaaatcctagcactgcatgagccctccaacattgaagttagcagagagaagttccggtgcttgagactgactgcctggttaaatgatgaggtcattaatttgtaccttgaattattgaaggagagagaggcaagagaaccaaaaAggtttttgaaatgccatttctttaatacatttttttataagaagcttgcttgcggaaaaaatggctatgactacaaatctgttaaaagatggactacccgcaggaggttgggttatgagcttattgagtgtgataaaatctttgtccctgtacataaagatgtccattggtgcttagcagttataaacatgaaagaaaggacattccaataccttgattctcttggttgtgtggatcatcatgtaccaagagtgctggtaaacttatag
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| Protein seq | MTALASPFLLPHRRRKRPLDDSHFHGPQRHRRRRLCLCPAAFPSPPIPPEAASSPAFDMGGFLSFLRGKPRHDDAGLGVYRGWVDVRSRDLSVATAMEDDDAGFGPRLVVRRRVGDPRKAALEAAAPRPRVKREPYYKEALERMRSHDKRLGELASLVNLEEEKLAELRKAAEPPKEDLSELFTPLTAEEENEVHNCLFGRGSSTEILALHEPSNIEVSREKFRCLRLTAWLNDEVINLYLELLKEREAREPKRFLKCHFFNTFFYKKLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYLDSLGCVDHHVPRVLVNL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0017140 | OsLima_03g0017140.02 | Chr03 | 13274280 | 13278810 | - | NAM | ||
| CDS seq | atgaccgccctcgcctcccccttcctcctcccccaccgccgccggaagcgccCCCtcgacgattCCCacttccacggcccgcagcgccaccgccgccgccgcctctgcctctgcccggcggccttcccctccccgccgatcccgcccgaggcggcgtcgtccCCCgcgttcgacatgggggGcttcctctccttcctccggggtaaacctaggcacgacgatgccggcctcggggtgtacaggggctgggtcgacgtccggtcgcgggatctctcggtggccaccgccatggaagacgacgacgCggggtttggcccccggttggtggtgaggcggagggtcggggacccgaggaaggccgccctggaggccgcggcgccgcgtccgcgggtgaagagggagccgtactacaaggaggcgctcgagaggatgaggagccacgacaagaggctgggcgagctcgcttcactggtgaatctagaagaggagaaactcgccgagctgcggaaggcggctgagccacccaaggaggacctgtctgaactctttacacctctaactgctgaagaggaaaatgaagttcataattgtttgtttggtaggggttcaagtactgaaatcctagcactgcatgagccctccaacattgaagttagcagagagaagttccggtgcttgagactgactgcctggttaaatgatgaggtcattaatttgtaccttgaattattgaaggagagagaggcaagagaaccaaaaAggtttttgaaatgccatttctttaatacatttttttataagaagcttgcttgcggaaaaaatggctatgactacaaatctgttaaaagatggactacccgcaggaggttgggttatgagcttattgagtgtgataaaatctttgtccctgtacataaagatgtccattggtgcttagcagttataaacatgaaagaaaggacattccaataccttgattctcttggttgtgtggatcatcatgtaccaagagtgctggctagatatattgcagaggaagtgaaggacaagagtaataaagagatcgacacaaacacttggcacgaagagttagttgatgatattcctttgcagcaaaatgggtgggactgtggtatgtttatgctcaagtacattgatttccacagcagaggattgagcatgtcttttagtcaggaaaacatggaatatttcagaaagagaacagtgatggaaatcttaagattaagagctgactaa
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| Protein seq | MTALASPFLLPHRRRKRPLDDSHFHGPQRHRRRRLCLCPAAFPSPPIPPEAASSPAFDMGGFLSFLRGKPRHDDAGLGVYRGWVDVRSRDLSVATAMEDDDAGFGPRLVVRRRVGDPRKAALEAAAPRPRVKREPYYKEALERMRSHDKRLGELASLVNLEEEKLAELRKAAEPPKEDLSELFTPLTAEEENEVHNCLFGRGSSTEILALHEPSNIEVSREKFRCLRLTAWLNDEVINLYLELLKEREAREPKRFLKCHFFNTFFYKKLACGKNGYDYKSVKRWTTRRRLGYELIECDKIFVPVHKDVHWCLAVINMKERTFQYLDSLGCVDHHVPRVLARYIAEEVKDKSNKEIDTNTWHEELVDDIPLQQNGWDCGMFMLKYIDFHSRGLSMSFSQENMEYFRKRTVMEILRLRAD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 13275319 | 13275801 | - | OsLima_03g0017140.01 | OsLima_03g0017140.01,OsLima_03g0017140.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.240805 | 0.172598 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0344300 | RBH | 2.514225 | 2.688001 | 2.158961 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g22400 | RBH | 1.823032 | 1.895611 | 0.693592 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0344300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0017400 | RBH | 0.720823 | 9.837357 | 6.657074 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0017240 | RBH | 0.181741 | 2.274598 | 1.691185 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0017250 | RBH | 0.685327 | 5.382667 | 8.520110 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0017250 | RBH | 0.163823 | 0.214138 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0017040 | RBH | 5.594672 | 14.126903 | 9.718903 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0211900 | RBH | 6.578525 | 14.0816265 | 19.9897025 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016890 | RBH | 0.153299 | 0.493252 | 1.324357 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0216300 | RBH | 7.5730955 | 16.537856 | 24.0340195 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0017150 | RBH | 0.579668 | 5.716925 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0017220 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0017090 | RBH | 0.592661 | 1.633213 | 0.987566 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016990 | RBH | 0.223610 | 4.530741 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016970 | RBH | 0.897861 | 3.635780 | 1.849054 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016950 | RBH | 1.133013 | 22.090616 | 6.675164 |
