Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0016280 | OGI:03003760 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:12604933-12611383 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctattcttttgtgccacccctttttgatgaagatgaatttctcttctttttgccttctaattcagccctagaattatgcttctcctgtgatatatcttgttgcaaatcttttcttttgtttgaaacatctttctttttctgctctacaccatcctgcaacaaataatatctttctttattactttttttaaaaaattcaattcatatggatttataatttttgttacctgttctcttgtatttttaacctttcttctcttcttccttggcaagtcaaactcaacgtgtttcagagggcacgttggaaatgtgtgatctgtcctctgacaatgactgcaatgatatagttctttttgttgtatttcttccctgattgtcttgtatctttgagctggcctgcctttggattttgcaatatctggatccaacaatatttcttctgtattttcctcagattgttgattgcctttttcttgtgagttcaaattgtcttctgtacttgtatctgaatcattgatctcctgctcagcatctttatttgaacacattaattccaattgtttagcaattttgtccatctcttccactgcaaactggaaagtttcattgcttttcgatcattttgatgctatttctgcacttttccttgacaaaatgttgaatctcaggattgagctctgtgctaaaggtatatttccattgccttttCccccaagacctttgtactctttttttctccatctttcaataatatatttttctggtatcttcattgcattgaggtggagcattactttcaatacatggcagcatagaagtccatctttctcaaactttgagcaaatgcagttgaaatcctccttttccaagtccacaataacaaggtacttccttcttctgattacttgaatattttgattcaatgccaaaaaaacttcataagttttgaacttctctacttcatttatttgaaatctagttgttcttttcaactcaacttgaaacttgatgaagattttgcgaTtatacattctcattgcttggtactcaatgtagtaatgggaccaaagtttgcttggtttctttgtccttgaaatgtgatcatcaaactgttccaagttttgaattgtatccattactctttcatactctatcatgaagtttgtaatgctgtactgtggaccaacattattcttaaaccttgagttagtcccttcactaagagctgtgctttttataaatggacagaaatcacccttgaaatacactggaataaatctttttctaattgaccacatgtgctttagaaaattgatatgctgaacttcaaagctgtcaatcatttcttgccataaatactcaaattcttcttctgtaactgagttatttatgatgtcttcatactcatcatacaacccttcttttgctttgaacaaatttccagatagattgaaagctttctttacaatatgaaagaagcaatttctgtgctttgcattttgaaatacttgagcaattgctgatctcattgctccatcctgattagtaatgattgtttttggttctttttgtgacatagctttcaaaaaagttctgaacagccatttaaatgtttctgaagtcttatcatgcaaaaatgcacaaccaaaaacaattgtgtttccatgtccagaaattccaacaaagggagcaaacgggaggttgtatctgttggtgaaatatgttgtgtcaaaactcacaacatcaccatatttctcaaaccactccctcgatctcccgtctgtccaaaacagatttttcactttcttgctctcatccaaatcaaactcataaaagaaatgtggatctttttcttttttccttctgaaaaattctaaagTtttTCATCATATCATTGCTGCTTGTCTCCTTGTTAGTTGTGGTTCTCACATTGCTTATATCTTTTTTCGTATAAGGCAAAGAAGTCAATCCTCCTCTTAGAACAGATAAAATCACAATCATGTGCCTTGTTGGTATATTACATTCCTTCAAGGTCCTTATGAGCATTTTTTCTTCTGTAGTCATGTGTTTGTGTGATTTGAGAAATCTCACTTCATCTCTTGGACTTAGTTGATGATTGTGGTTTAATTGTACCCTTGAAATATTCCAAATCTCATTCCTCTCTGAAATAACCAGAGCACACTTGCAATCTGTTGCATCATTTTCATTTGTATTTCTTTCCGAAACCACTGTTTCCTCTgcgcttactgatttggattgagaagttggtttgccttgtctattacatctgaacgttactctagtcacttctccattccttttcttgcttgttgtgtggtagttgtgagccctgacaatagaaaatccagccaacagagcatagaagttaaagaattcatgtgcttctgtaatagtcttaaattttattccaactcttggtatatatctggtatcaattgctgcattattgccctttgtagcttcttcctgttcattctctacgaaaatatttatgtcttcttctgtcagctcttgttgattttgatttgtttcagagttatcatttggattattgtcatcatctcttgttccttgaactgaagtacatcgatgattatccattgaacttggttcctgcaaaaaaaaaaaaagcagttccattagtttctgaaattaattttctagcctattcattgctaatctgaattattcaatttaattttttaagaaatattaatgtttgtactctttttttttcagactatgaaacttcaatcatcaatcattgttatctagagaaaaaggtacaaacaacaaaaattacctttttaccatctaacaaattgaatatatcaagattccaattatccattgcatcctcttcattactctcatcttcctggaatttgaattacattacaaagttaaaatttactaaaattatcataatttttaatactacaacaggaagtaatacatccaagacaacatgcctcatttgccgcatcattattccattcttcaatattagcatcagtacgatttgttgttaatataattgaatttttcaaaacaaaattttaatatcaatacttatttgcttttgaatttgaattattagattcaattaaataattaatatttcatacctgaaatgcacttggactcgcaacaaaagtagagtgtgctgaattttgttcctgtaaattccaaTaaaaacagaaatattacaactaaattatatatgatattcaaatattgtttttcttacctgcatatcagaaatcgtaggctgtgatgatatgatttgttccattaagctTGtgtatgacatatttgcaacctgcAaataaattttcatatagtattttgactaccaccttcaaatttttcctttaatagcaaaaactttgtaatatgaacttactgaattcattgatccgaaaagagataattcatcatatgaatatttgttgctgtaatcaacaaatgcttctgtcatacttgctaaattatccatactttgcttttctactgttgcatcttctgctcctaatccaatatgatctgttatatttgcaattaaagtaattgtgatcaaattatatataggttccagtcaaactatataacaatcaagttgaagtttaaaattattcttattctgtttcaaattgactgtaatttttgcattttgtgTttttttactgaaagaattatgcatttgttcaattccattttgaattgttacctgtgtttggttcaaccagagcattgcttcttcctacctcattacctattatgcctgcaatagattgattgattcaacattaaaaattagagtaaatttgtattccagtttgaaatttttagtattggaattacagttttttatgtaatttttatacaaattaactgtaatgAaagaattgttctgaaacagaataagaatacctgtgtaagatcttacctgagtttacaaaagttgtttcatactctgtcaaaatactttgtttcatattctgaatttgttttgattgaatacttctttctccttctgacaattcaactgtgatacctgcaaaataaaaatcattatgaaggaagtcaagatagatattgtattttcagttattgttacatgtatttttattacttcttctctgtaactagttttaatgttaatattttagattttaaaaagtacccacttgaaagtatatagttcagatcacctagatgtttgtcattttttaaaaaaatacattgaacgacataattttttgtttcttacctgagctcaacatagctgtgttaatttctgtcagatttgattgacttataatctctgtatccatttctgtcagagctttgaagtgcttttttatatctgatggcatttttttaaaaaatttcagactcattttaatcttcttatttgtgaataaaatttgaaattatcttgttcacctgattctttttcttctatttccatagaactcttgctttgtttctccttttgtatgccacctgcatagaaagaataaattaatattgcaaagaacttttgaatttctaaaccagcaagttctgaaacatagagtgtatttcccaatcTTtttcataagaccatttacagtgaacatatatttgtattacagagaaattatactataattccagtaaacagaaactataactacttaaaaatccaactacaatcaatttgatacttgattatagacactgaagtgaacaaatgaatcaatttgtataattctttaaaaataattttaatattacactaagtatgtatttcaattacagtgtaatgctactataattccagttaaaatttactgtaactcttgtttacctataTtttttccttctatttccttagaacttttgcattctttgtccttttgtatgacacctgtaaagaaatattcaagatagtctttaaatgtttttcaaacctgtatgagtatgttccataagtagtattacagtaaataagtatttcaattagagtgtaatgctactgtaattccagttaaaatttacttatggaacaaactatctgatggcactttttcttataatatctgatggcactttttcttttctaTttctttctatttcaattagatatgatttgttttGGtttttacatatgtactacttttgaagtatttgataccctgttttttgctcgaaaaatctgaaatcatcttgaaattgagattaaactgcattagatcatgatttcatatgaattttacattgtttctttgtagttacatgtattttcaattgaaattgtagtgttcactctatatatttgtaatacaagttcactgtaactagtttcattatattctattttgagacattgaacaaatcaacaatgatctattatctgaaatcttcaTTttgttgtctgatgataagagaaacattgacctgagatagtcttgagtttaaaacatatcttgaatgtgttcctgaatttgtgcatgattgtgtgagctaaactaTtttgtttactgaactaatctttttacaatgagttaatactagaaatactgtgattcttgtatgtaaTtttattacttttttactgtaacatgttaagaaatttgtgagttcatatgaattggctcttttgtttgtgctgtatgagatattgaacttttatgtaatattgagttggatgagacaagtggttgacattgagatttgaatttgtcattagtttaatatggtgattatgctgataaaattgaatgtatgacaattcaggatatgctatatggcctagttgttatatttctgtataactgtataactgtgatatctttagagtgaaattcagtaaggttggaagactaatcaatctgtcatgtttttttataaagttagtttggtattcatcaatagtacacagtaatacAatcatccagaatgcagttttgtagtactgaatacagtgttgttttacttttaacattacatagttcagatctacagagcaaacatatgaaattttcagttctgggttgttgtatttatccagcaaagtggattgttaaccttgtttcatttgacatattcagcaatttcatgTATtcttttgaattgtatatttgacctaaactctctctatgatctttttcaggaattgtatataggggataagaattggagccttgaactaaccttgaactggagccttcttgtttctcttgattttgccttccttttGttttttctttgtgttctccagattctgtgtttcctttatatggatctcaactttctgttcagaagttgtctttggtttcttctttcctctagaactactctttgattctgacattgtactctctccttccatctgcgatttggatcctctttttctctcttctttctcttctcctagctccat
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| CDS seq | atggagctaggagaagagaaagaagagagaaaaagaggatccaaatcgcagatggaaggagagagtacaatgtcagaatcaaagagtagttctagaggaaagaagaaaccaaagacaacttctgaacagaaagttgagatccatataaaggaaacacagaatctggagaacacaaagaaaaaaCaaaaggaaggcaaaatcaagagaaacaagaaggctccagttcaaggtgtcatacaaaaggacaaagaatgcaaaagttctaaggaaatagaaggaaaaaAtataggtggcatacaaaaggagaaacaaagcaagagttctatggaaatagaagaaaaagaatcagatataaaaaagcacttcaaagctctgacagaaatggatacagagattataagtcaatcaaatctgacagaaattaacacagctatgttgagctcaggtatcacagttgaattgtcagaaggagaaagaagtattcaatcaaaacaaattcagaatatgaaacaaagtattttgacagagtatgaaacaacttttgtaaactcaggcataataggtaatgaggtaggaagaagcaatgctctggttgaaccaaacacagatcatattggattaggagcagaagatgcaacagtagaaaagcaaagtatggataatttagcaagtatgacagaagcatttgttgattacagcaacaaatattcatatgatgaattatctcttttcggatcaatgaattcagttgcaaatatgtcatacaCAagcttaatggaacaaatcatatcatcacagcctacgatttctgatatgcaggaacaaaattcagcacactctacttttgttgcgagtccaagtgcatttcaggaagatgagagtaatgaagaggatgcaatggataattggaatcttgatatattcaatttgttagatggtaaaaaggaaccaagttcaatggataatcatcgatgtacttcagttcaaggaacaagagatgatgacaataatccaaatgataactctgaaacaaatcaaaatcaacaagagctgacagaagaagacataaatattttcgtagagaatgaacaggaagaagctacaaagggcaataatgcagcaattgataccagatatataccaagagttggaataaaatttaagactattacagaagcacatgaattctttaacttctatgctctgttggctggattttctattgtcagggctcacaactaccacacaacaagcaagaaaaggaatggagaagtgactagagtaacgttcagatgtaatagacaaggcaaaccaacttctcaatccaaatcagtaagcgcAGAGGAAACAGTGGTTTCGGAAAGAAATACAAATGAAAATGATGCAACAGATTGCAAGTGTGCTCTGGTTATTTCAGAGAGGAATGAGATTTGGAATATTTCAAGGgatggtgtagagcagaaaaagaaagatgtttcaaacaaaagaaaagatttgcaacaagatatatcacaggagaagcataattctagggctgaattagaaggcaaaaagaagagaaattcatcttcatcaaaaaggggtggcacaaaagaatag
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| Protein seq | MELGEEKEERKRGSKSQMEGESTMSESKSSSRGKKKPKTTSEQKVEIHIKETQNLENTKKKQKEGKIKRNKKAPVQGVIQKDKECKSSKEIEGKNIGGIQKEKQSKSSMEIEEKESDIKKHFKALTEMDTEIISQSNLTEINTAMLSSGITVELSEGERSIQSKQIQNMKQSILTEYETTFVNSGIIGNEVGRSNALVEPNTDHIGLGAEDATVEKQSMDNLASMTEAFVDYSNKYSYDELSLFGSMNSVANMSYTSLMEQIISSQPTISDMQEQNSAHSTFVASPSAFQEDESNEEDAMDNWNLDIFNLLDGKKEPSSMDNHRCTSVQGTRDDDNNPNDNSETNQNQQELTEEDINIFVENEQEEATKGNNAAIDTRYIPRVGIKFKTITEAHEFFNFYALLAGFSIVRAHNYHTTSKKRNGEVTRVTFRCNRQGKPTSQSKSVSAEETVVSERNTNENDATDCKCALVISERNEIWNISRDGVEQKKKDVSNKRKDLQQDISQEKHNSRAELEGKKKRNSSSSKRGGTKE |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0016280 | OsLima_03g0016280.01 | Chr03 | 12604933 | 12611383 | - | NAM | ||
| CDS seq | atggagctaggagaagagaaagaagagagaaaaagaggatccaaatcgcagatggaaggagagagtacaatgtcagaatcaaagagtagttctagaggaaagaagaaaccaaagacaacttctgaacagaaagttgagatccatataaaggaaacacagaatctggagaacacaaagaaaaaaCaaaaggaaggcaaaatcaagagaaacaagaaggctccagttcaaggtgtcatacaaaaggacaaagaatgcaaaagttctaaggaaatagaaggaaaaaAtataggtggcatacaaaaggagaaacaaagcaagagttctatggaaatagaagaaaaagaatcagatataaaaaagcacttcaaagctctgacagaaatggatacagagattataagtcaatcaaatctgacagaaattaacacagctatgttgagctcaggtatcacagttgaattgtcagaaggagaaagaagtattcaatcaaaacaaattcagaatatgaaacaaagtattttgacagagtatgaaacaacttttgtaaactcaggcataataggtaatgaggtaggaagaagcaatgctctggttgaaccaaacacagatcatattggattaggagcagaagatgcaacagtagaaaagcaaagtatggataatttagcaagtatgacagaagcatttgttgattacagcaacaaatattcatatgatgaattatctcttttcggatcaatgaattcagttgcaaatatgtcatacaCAagcttaatggaacaaatcatatcatcacagcctacgatttctgatatgcaggaacaaaattcagcacactctacttttgttgcgagtccaagtgcatttcaggaagatgagagtaatgaagaggatgcaatggataattggaatcttgatatattcaatttgttagatggtaaaaaggaaccaagttcaatggataatcatcgatgtacttcagttcaaggaacaagagatgatgacaataatccaaatgataactctgaaacaaatcaaaatcaacaagagctgacagaagaagacataaatattttcgtagagaatgaacaggaagaagctacaaagggcaataatgcagcaattgataccagatatataccaagagttggaataaaatttaagactattacagaagcacatgaattctttaacttctatgctctgttggctggattttctattgtcagggctcacaactaccacacaacaagcaagaaaaggaatggagaagtgactagagtaacgttcagatgtaatagacaaggcaaaccaacttctcaatccaaatcagtaagcgcAGAGGAAACAGTGGTTTCGGAAAGAAATACAAATGAAAATGATGCAACAGATTGCAAGTGTGCTCTGGTTATTTCAGAGAGGAATGAGATTTGGAATATTTCAAGGgatggtgtagagcagaaaaagaaagatgtttcaaacaaaagaaaagatttgcaacaagatatatcacaggagaagcataattctagggctgaattagaaggcaaaaagaagagaaattcatcttcatcaaaaaggggtggcacaaaagaatag
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| Protein seq | MELGEEKEERKRGSKSQMEGESTMSESKSSSRGKKKPKTTSEQKVEIHIKETQNLENTKKKQKEGKIKRNKKAPVQGVIQKDKECKSSKEIEGKNIGGIQKEKQSKSSMEIEEKESDIKKHFKALTEMDTEIISQSNLTEINTAMLSSGITVELSEGERSIQSKQIQNMKQSILTEYETTFVNSGIIGNEVGRSNALVEPNTDHIGLGAEDATVEKQSMDNLASMTEAFVDYSNKYSYDELSLFGSMNSVANMSYTSLMEQIISSQPTISDMQEQNSAHSTFVASPSAFQEDESNEEDAMDNWNLDIFNLLDGKKEPSSMDNHRCTSVQGTRDDDNNPNDNSETNQNQQELTEEDINIFVENEQEEATKGNNAAIDTRYIPRVGIKFKTITEAHEFFNFYALLAGFSIVRAHNYHTTSKKRNGEVTRVTFRCNRQGKPTSQSKSVSAEETVVSERNTNENDATDCKCALVISERNEIWNISRDGVEQKKKDVSNKRKDLQQDISQEKHNSRAELEGKKKRNSSSSKRGGTKE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0255000 | SBH | 3.332937 | 2.704005 | 6.448762 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21360 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0255000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016540 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0025330 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0025380 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016380 | SBH | 0.051611 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016150 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0201300 | RBH | 0.0069915 | 0.1400355 | 0.0128135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016030 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0205500 | RBH | 0.01418 | 0.109958 | 0.0036515 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021210 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016290 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016340 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016210 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016130 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016100 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0018390 | SBH | 0.299351 | 0.0 | 0.000000 |
