Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0016270 | OGI:03032430 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:12598731-12604691 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgatgacacttaagaacacctgcgaatggggctgcaggctggtaaggaccaattttcttgctgatattctgatggcttgccttggcagtaatcaataaataacttgttatgacaacaccgacacgcatacatgcgctggaactgcagcagcaagccatggaggacttcctcctttctcctaaaaaccatgatattggaatggagtggaacagagtacagagaaggcaattgttcatactgcaggcagaggtccaaaacccctcaattgcatgttttaccatcatgctgatgagctaatctatagaaatTAttcatttacgtttaatggccattttaatcggatggaagtgtcagttcagtggtattacagaatgaagtaataatttgcgaatGgggaaaactatttagaagacagccctagcaatgcatgacatagtgcccaatcgagttagaaattcaagatccagaaacaaactgtattatcacaaaatcattggaatatacatgtagatagacaataggtaaccgtaactttgtaatacttaagtctagtagtacgtacttagacatattgttgtagattatcgaagacatacatatagactgtctagtacttagattatgaaacgagagaacaaatcaacattctgaagagcctgagctcttctagcgtggcggtgacttgctcacgcacaagctcgatcctcttcaaataaacctccagatcaattgagtatctgcggctgcctccaaatctcgcggttcagcccaagaatgacgaaactaagggccagaaatatccagctcccccaaatcccattcccaagctcatttatgaaccagtctgccaagctatagcgactgagctgatgaactccttcggaagtggtgacaaaatgctctggacaggacagcctcctcgttggcaccattggcatatgtgcaatccgcggaattgagttcttcatagcaacgatgagcggctcctgatgagctccatcagctgaagtcagtgcaggcgtgaaagacaatgctggggcctcggcctccggctcagttgaagttttcgtttgatccagcaacaacaagttgaacttgttggtaacttttcgtgacaagtcgacaagcacgatcgcaacacctaaacgccttgcggtgatatggagtcgccaaccatctcaatctagccaagcggccaaatcaagatgggttttgtagaaaaccagctaaaccggctaacggagccgatttagagatcaaaatcagcctctagaccgatttagatcgatacgaggataactacccgtctcgtgggtaaaacggaaggttttcaggacaaacctataaagaggtgtcgcactctcgcagcggcggcggacggtttacggcgcaaaccgacaaagatggattaaactagggtaaaatagaaaacatagtaaatgaacgattcaagtagattgtattcggaggttttacaatgaaccagccttgtcccttaaataggggttggtcttgccctctacaagtccttttccacgtccaactcgggatagaaaccaaaggaaacacgaaacatgccttcccgagcaaggaaacccgagacccgacgaaaacagactcggactcggaccctgacggtctgaccacccacatacctgcggtcagaccgaccctactagccggtcagaccgcccacatacctgtggtctaaccggcccttgtgaaggaaacccgacactttccaaactttggcaatttttccctatttcgtccataggtgccaaatttaggtgtaaacacatgcccccctgcctttttggtgaacatacgtgaacctaaaagcatagaacatgttatcttagggcgataatccaattaccggccataggacttcctaagtatcttaccaaatgctcgagaagtatttcttcaagctatctcccattagttgctctctggaaacaccgtcttgaagtgtcttcatgtccttcaaagtcttcaaacgcttgtcgatgacgtcttcaaaattgctccccatcaaggtcttgtaatcttcaaccgacaagtcgtcttgcttgaaataccgaagagagccaagatttatctcaactagcaaaacggcaatttcaacaatgttttattactcgactcggcttatccattagcctgagcgtagtaaagagaagaactcaacaacttaatatcataagatttggcaaaacttctcacttctttggacataaaagaaactcctttaacgtttgaggaataccgaatctatgaacaatatgcttcaaaataaagtcaattacctccgtacaagtaatattctcgagcggcatggcttcggcccacttagtgaagtaatccattgcaattagctcgaaccaatacccttttgatgacgaagaataaatttgaccaatgaaatccaaagcccaacctcggaacggccatagtttaatgataggattcaacacagcggtaggcgctaattgaacattgccgatccgttgacaagcttcactccctctataacatttgaaacaatcatcaattattttcggccaatgaaaccccactctcctagcaaccaatttatcttacgggccgattaatgaatttcacaaatcccttcatgtactactctcctagcaactttagttgatcattatctaagtaatactccatctattttttggcgatataataTttgagtgcttaccgccgaatcttccgatcaaccttaagtgtaggatctttcaaaaatctaatcaaaggaattctccatgctatttctaactcatgggcacaaatgtccgaattcacaattaattcaaccttttaatcaattgtaacgtgccccccagcctcctgtctgggatcggtcagaccggccacgcaatgccggtcagaccaccctgtctgtccggtcaaaccgaccatgcagagccggttagaccgcatgtcaccaccggtcagaccggccatgcaatgccggtcagacaacccctggtctgtgattttgccaatttcatccaaagacttaaaaatcaagcaccggcttcgctaatatcaaaaatactcctttcttcatattataaccagatgcttggtgtatcaaactattgaaccaaaactaagaaattacacctgctcatcttgtagattcatatcaagttattcctgattcatactcctcaaatcctgttttaagaaataaggtacttgtgaagtaacttcaaatttcataaggaatacttttttagaacattatattgatttatacaaatcttgcagatcactccaagaaagttgtctcaaacttttgctgctgcagttgaaagtccaataatctgttcagacagtccggtaattctgacattaatttctttctttatttcttctgtatatacaaactaaactttcatttgttaaattttgaaattttaggataatatgtacatggtgacacttgaaaattcaacttctcctaatgcttctctcaatgaaaacaaaaaaaatgaaaaagattgtcacatcataaaggtatgaataatctcatagtttattttcattgatgttccctttttgaaattAaatggtgtttaaaaatttttctaattccaTttttgcattgttgttctccatagttttgctgtaattcttgtaggttacaatgtatttcagttctagttaataacatacattctttcttttttttattccaaaaggttttccttctcactgcttattcatttctttttattccgtttataatctcaagtttgtaagtttgctgttgaacatcactagtttatttgctgaacttttatttcattttgatatttcaaatatttcatgccctgtaccttacttttatttatcatttttctgttctggttataagctaataattattattttttatttctagttattttgatcttctttttttaatatgtttctaattgtactatttaaTttatttgttaaatttcaggattcacctgatgttgtttttattggtgaaaagaaattctctaagaaatgtgctgatattggaaacaaaaccagcatgatgtacaataaaatgaatagaattctgttggattctcagaaacaaaacttcaaaaccTttgctagtccagaaagagttttgttatgcaatatgaagaatttcaatccaagtacttctggaacaaaaccaattcatcacgatcttagaagggtaatcaatcccgcaaagtattgcacagatccttatactccttaaagatcaaacttcacagtttcacaatatgaaagacaaatttataatgctgtttgcactctatcaacaagcagatatcaagagtaagtactattttgtacttttttttttctgataatcttcattttcaatgtatgatttgtaatttgaatttatttgtattctgaatgtagacgacatgcagttgaaattgatggtgttcactgcaaattcagttcttttggaggatcatttaattttggacatgaagtttctaattttgttgtctcTGtgttctgccgatatttgtttcatttatctcacccctcaaaatccaaaaaacattAtttcttctcttctattggagtaagtttcttaatttctgttttattatatttataattgaaaaccaatttttactatatgtttaatatttAaattattgaatacacttgtgctataggatgatcttctaaagcatccatcaagaattgatttctcatcagttaggaaatgctttgatggtgcatcaaaagctagacctattcaatcatgtgaaatggTttgtgaatttgtaaattacttgtcatatttaatttcatatttccttttacatttataattttttttattcaattgtttcagctctttccaattctctacaagcgccattggtttgttttcattgttcatctgaaagatgaaatgtttgtctttcttgactcattacatgaagaaggttctgaatatcaagatgaagttaagaatagattggtcagtttattttcaaaattttaaatatatgtattactgttcaatttgtgatttggaatttataattacagagttttcTttttatgttttgtagacatccaattttgcacttggttggaattccatcatggaagaatatcaaatcaattttgatgctttcaaaattgtatatccaccagtacctcgccaaaataatctgtaagttgtttttctttactgtaacttttagtccaataatattttttatttgtttgtttttgttggttagagttgtacagatgcccaattgttcTCTtgttgataggaatcttgtatgttctgttggtcattcagaaattcttgactgttctgtttttctaattgttgcataacctgtttgttttgctgttaatgcacaattttagtttgtttgttatgattatcattcaaaaaatttagttcctgtttgtcaattgtttcattcagaattactagatgggataagagcttgtttcttagtacaacatggactagAactgcaatagatttcattagaaaatttacagagtaaatagtatgaccataactgcattatctttttttaattttttttgtttgttttattttttatgataagtaactgtggttacttatgtcctttttctttttcctagttttgattgcagagtttttactctaaaatacatggaactatggggtccaagagttcaGCTgacaaaccatttctctcaaaaagacattcaaaacattaggattcaatatgtcaactgtcttttcttccatctagacaattctgttgtcggtacaggaacaaagaaactagtgattgactttgctcaggtaaaatttttttagaataATTatttttttcacaattttgttttttatttagtccttatatttttatatctcTttttatttgtaGggaaattga
More
|
||||||||||
| CDS seq | atgatgacacttaagaacacctgcgaatggggctgcaggctgatcactccaagaaagttgtctcaaacttttgctgctgcagttgaaagtccaataatctgttcagacagtccgctctttccaattctctacaagcgccattggtttgttttcattgttcatctgaaagatgaaatgtttgtctttcttgactcattacatgaagaaggttctgaatatcaagatgaagttaagaatagattgacatccaattttgcacttggttggaattccatcatggaagaatatcaaatcaattttgatgctttcaaaattgtatatccaccagtacctcgccaaaataatctagtttttactctaaaatacatggaactatggggtccaagagttcaGCTgacaaaccatttctctcaaaaagacattcaaaacattaggattcaatatgtcaactgtcttttcttccatctagacaattctgttgtcggtacaggaacaaagaaactagtgattgactttgctcagggaaattga
More
|
||||||||||
| Protein seq | MMTLKNTCEWGCRLITPRKLSQTFAAAVESPIICSDSPLFPILYKRHWFVFIVHLKDEMFVFLDSLHEEGSEYQDEVKNRLTSNFALGWNSIMEEYQINFDAFKIVYPPVPRQNNLVFTLKYMELWGPRVQLTNHFSQKDIQNIRIQYVNCLFFHLDNSVVGTGTKKLVIDFAQGN |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0016270 | OsLima_03g0016270.01 | Chr03 | 12598731 | 12604691 | + | NAM | ||
| CDS seq | atgatgacacttaagaacacctgcgaatggggctgcaggctgatcactccaagaaagttgtctcaaacttttgctgctgcagttgaaagtccaataatctgttcagacagtccgctctttccaattctctacaagcgccattggtttgttttcattgttcatctgaaagatgaaatgtttgtctttcttgactcattacatgaagaaggttctgaatatcaagatgaagttaagaatagattgacatccaattttgcacttggttggaattccatcatggaagaatatcaaatcaattttgatgctttcaaaattgtatatccaccagtacctcgccaaaataatctagtttttactctaaaatacatggaactatggggtccaagagttcaGCTgacaaaccatttctctcaaaaagacattcaaaacattaggattcaatatgtcaactgtcttttcttccatctagacaattctgttgtcggtacaggaacaaagaaactagtgattgactttgctcagggaaattga
More
|
|||||||
| Protein seq | MMTLKNTCEWGCRLITPRKLSQTFAAAVESPIICSDSPLFPILYKRHWFVFIVHLKDEMFVFLDSLHEEGSEYQDEVKNRLTSNFALGWNSIMEEYQINFDAFKIVYPPVPRQNNLVFTLKYMELWGPRVQLTNHFSQKDIQNIRIQYVNCLFFHLDNSVVGTGTKKLVIDFAQGN |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g21310 | RBH | 0.0 | 0.000000 | 0.064895 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0016520 | RBH | 0.027271 | 0.0 | 0.412896 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0016350 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0016390 | RBH | 0.0 | 0.324623 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0016370 | RBH | 0.0 | 0.023775 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0016130 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0201200 | RBH | 0 | 0.0112285 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0016010 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0205400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0021200 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0016280 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0016320 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0016200 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0016120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G016080 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0016030 | RBH | 0.0 | 0.0 | 0.0 |
