Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0013910 | OGI:03027800 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:10704142-10707205 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcagaacaacatgccaaagatgaaactcagaactcttttgtccattgcagagtcagctaaaatgtttgcagttcagtctgctgaaaactaaccactcttttacatgtaaagtagcactcactatatctgcagctatgcacaggaaacaaacattcagaacatcttctaagattctacctgaacacaaattccacgaacaagattagcggcaaccgacaaacgaaagaattttcagaacgagacatcagacatgaacgccattctttccccgcaaaaattttaagaaaaatgccattcttgatgcagctagtgattagctctcggaggacatgatctccagctcagcccaccacagcggcgacaccttcggagttgctccgtccggacccagcgcggtgatctccctcatccgagctgcaacctccgccatggtcggcctcctcttaggatcaggatcaatgcagctcctcaccacttcgcacagcgaacgcgcggcttcttcagagaaggaaccgatgctcgggtcaatcagctctgcgaggcgcgtctcgccatcgaagtagcgagacgccagccgttccagtggcccgtcctcctcagaatcgggaactcttccggtcagcatctccagtaataccatgccatacttgcgcaccgtgttctcgaggtccgaggaggagctggagttgctggtgcctggatttggttcctttgcaccgctccaaaattcaaggtcggacacctttgcagcgaaatcgtcggtaaggtatatggtcgtcgagtcgaaattccttggcacaacaggtggtttaagctgatgcatatgctctagacagtaagcgattcccatggatatcctgagccgcgtcatccaatccagcttctcggcttctctaactgcagcacaaccgtgacaacacagtcaaatttcaatacattgacccacagcacagagtaacagaatcaaatgaatcaaattggtgataggtgcagcatatgcagctgattcgtacatatatgaactaacaagtcatagcttaaacagttgttatcagctcaccatggtcatgcatagtttatcactggaggacctttttatgatgttcagtttgttttatgaggttgctgatatcttgaccaatgttcaaataaaaatgtaccgacaatttctggacatgatgatgaagagaatcatgataactgacaagaacacttaccatgcagatactcaaaaagtgttccatttggagcatattcaaacaccatcactctggtaaaaggttgctcttcctcacaatagccaagcaagttcataaagttcttgtggcttactttggacaaacttgtgatctaaaatcataaattcagagtaagcaaaacaaatatatatgagaaataggtaacagtatgttgcaaaaaaaggtgatagtacagttaacaatacagtacctttctcctgtaccgagattcacattcttttgaccaatcgtctgcagacgttaccaaacttgatgccactgctatttcaactccactagataaagttcccttgtacagtgtacaggtagatgtacaaccaattatattgctaaaatcctcgcacgctgtttccagctctgatcgtttcaatgcaggcacacctatagatacaattgcagtgtgatggattcggaaaactgccgagatacttatatatgcaagtaggaatAaagcataccggttacaaaagccttttgcaattgcccgctaagtcccgttgcccatggcctcacagtccccatctttttagctcggcagtagaatgcaccagctgctgatatgataaggagagcagcaatccctgctgtgataaaaccataagttgtccaggaacgtttaaaccaagagcgacctgtagtttcaactgaatgatcgtgctcagctcgccgagttgtaggcttaggcctaaccaattgtggaggggttgtgaatggatggtgtggagatctgtgtgctatgatttttgaagatggtgatggtgatggtgagcctttcggtggggatacccatggcgagggtgatggagaagacaccggtcctgatgctgtatcagaaagtatttagtcctgtggaaactcagatgctgtatctcctctatgagatattgagattagttgttacctgatggagattgttcaagtggtagaggagctggtgcaccttggtttactccaccagtctgcagaagtcttctaacgttcctaaataaggaatagtaatgctatataagcaaaatatagctgttcagcaaactttgggcagaatatagctaaatatctgctatattagcaagctaagtgacttattagatttgttcatgacgcatacttcagacgaagtagtacaagtagaacactattaattgctccctatgcataaaaaaccaatcaattcaactcagaaatgcacacatgaattcatcatggtgaataccaaactgattatctgtgctatcctgtcagacatgaaaggcaacaaggtaacactaaaaccatctattctccaattcaggtctcgacaattacaaattactgattaaaaactaacaaagaagtaaattctcagaaccagagcacccacctagaaccagaagaagcaccaatgctgctcaacccctcctctccaactccgaggccttcagtccctgaagcaaaccaagaaggtaaaccaccatatccccaaatgcacacccagaaaccctgaagaatccaaatcttgagaaaaaaagaaaaccaaacctgcgccgcagagcggccaagaaaccgcaaccaagaacacaagaagacgaagaagcagcagcagcctcgggcacgggagctccattgcttcagccgcagggcgagtgaggagaagaagaggaatggcgcggtggcatcgacgggagggaacccgagaggaggtggaagcggagaggggaagcgcgtggttggttggggagaagggcggtggctggcgccgacgacgacggcgaaagtggcagcggaagatggtggggaggagagggaaaaggaggctgcacgaaggc
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| CDS seq | atggagctcccgtgcccgaggctgctgctgcttcttcgtcttcttgtgttcttggttgcggtttcttggccgctctgcggcgcagggactgaaggcctcggagttggagaggaggggttgagcagcattggtgcttcttctggttctaggaacgttagaagacttctgcagactggtggagtaaaccaaggtgcaccagctcctctaccacttgaacaatctccatcagcatcaggaccggtgtcttctccatcaccctcgccatgggtatccccaccgaaaggctcaccatcaccatcaccatcttcaaaaatcatagcacacagatctccacaccatccattcacaacccctccacaattggttaggcctaagcctacaactcggcgagctgagcacgatcattcagttgaaactacaggtcgctcttggtttaaacgttcctggacaacttatggttttatcacagcagggattgctgctctccttatcatatcagcagctggtgcattctactgccgagctaaaaagatggggactgtgaggccatgggcaacgggacttagcgggcaattgcaaaaggcttttgtaaccggtgtgcctgcattgaaacgatcagagctggaaacagcgtgcgaggattttagcaatataattggttgtacatctacctgtacactgtacaagggaactttatctagtggagttgaaatagcagtggcatcaagtttggtaacgtctgcagacgattggtcaaaagaatgtgaatctcggtacaggagaaagatcacaagtttgtccaaagtaagccacaagaactttatgaacttgcttggctattgtgaggaagagcaaccttttaccagagtgatggtgtttgaatatgctccaaatggaacactttttgagtatctgcatgttagagaagccgagaagctggattggatgacgcggctcaggatatccatgggaatcgcttactgtctagagcatatgcatcagcttaaaccacctgttgtgccaaggaatttcgactcgacgaccatataccttaccgacgatttcgctgcaaaggtgtccgaccttgaattttggagcggtgcaaaggaaccaaatccaggcaccagcaactccagctcctcctcggacctcgagaacacggtgcgcaagtatggcatggtattactggagatgctgaccggaagagttcccgattctgaggaggacgggccactggaacggctggcgtctcgctacttcgatggcgagacgcgcctcgcagagctgattgacccgagcatcggttccttctctgaagaagccgcgcgttcgctgtgcgaagtggtgaggagctgcattgatcctgatcctaagaggaggccgaccatggcggaggttgcagctcggatgagggagatcaccgcgctgggtccggacggagcaactccgaaggtgtcgccgctgtggtgggctgagctggagatcatgtcctccgagagctaa
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| Protein seq | MELPCPRLLLLLRLLVFLVAVSWPLCGAGTEGLGVGEEGLSSIGASSGSRNVRRLLQTGGVNQGAPAPLPLEQSPSASGPVSSPSPSPWVSPPKGSPSPSPSSKIIAHRSPHHPFTTPPQLVRPKPTTRRAEHDHSVETTGRSWFKRSWTTYGFITAGIAALLIISAAGAFYCRAKKMGTVRPWATGLSGQLQKAFVTGVPALKRSELETACEDFSNIIGCTSTCTLYKGTLSSGVEIAVASSLVTSADDWSKECESRYRRKITSLSKVSHKNFMNLLGYCEEEQPFTRVMVFEYAPNGTLFEYLHVREAEKLDWMTRLRISMGIAYCLEHMHQLKPPVVPRNFDSTTIYLTDDFAAKVSDLEFWSGAKEPNPGTSNSSSSSDLENTVRKYGMVLLEMLTGRVPDSEEDGPLERLASRYFDGETRLAELIDPSIGSFSEEAARSLCEVVRSCIDPDPKRRPTMAEVAARMREITALGPDGATPKVSPLWWAELEIMSSES |
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| Function | Protein MALE DISCOVERER 2 [UniProtKB/Swiss-Prot:C0LGQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0013910 | OsLima_03g0013910.01 | Chr03 | 10704142 | 10707205 | - | NAM | ||
| CDS seq | atggagctcccgtgcccgaggctgctgctgcttcttcgtcttcttgtgttcttggttgcggtttcttggccgctctgcggcgcagggactgaaggcctcggagttggagaggaggggttgagcagcattggtgcttcttctggttctaggaacgttagaagacttctgcagactggtggagtaaaccaaggtgcaccagctcctctaccacttgaacaatctccatcagcatcaggaccggtgtcttctccatcaccctcgccatgggtatccccaccgaaaggctcaccatcaccatcaccatcttcaaaaatcatagcacacagatctccacaccatccattcacaacccctccacaattggttaggcctaagcctacaactcggcgagctgagcacgatcattcagttgaaactacaggtcgctcttggtttaaacgttcctggacaacttatggttttatcacagcagggattgctgctctccttatcatatcagcagctggtgcattctactgccgagctaaaaagatggggactgtgaggccatgggcaacgggacttagcgggcaattgcaaaaggcttttgtaaccggtgtgcctgcattgaaacgatcagagctggaaacagcgtgcgaggattttagcaatataattggttgtacatctacctgtacactgtacaagggaactttatctagtggagttgaaatagcagtggcatcaagtttggtaacgtctgcagacgattggtcaaaagaatgtgaatctcggtacaggagaaagatcacaagtttgtccaaagtaagccacaagaactttatgaacttgcttggctattgtgaggaagagcaaccttttaccagagtgatggtgtttgaatatgctccaaatggaacactttttgagtatctgcatgttagagaagccgagaagctggattggatgacgcggctcaggatatccatgggaatcgcttactgtctagagcatatgcatcagcttaaaccacctgttgtgccaaggaatttcgactcgacgaccatataccttaccgacgatttcgctgcaaaggtgtccgaccttgaattttggagcggtgcaaaggaaccaaatccaggcaccagcaactccagctcctcctcggacctcgagaacacggtgcgcaagtatggcatggtattactggagatgctgaccggaagagttcccgattctgaggaggacgggccactggaacggctggcgtctcgctacttcgatggcgagacgcgcctcgcagagctgattgacccgagcatcggttccttctctgaagaagccgcgcgttcgctgtgcgaagtggtgaggagctgcattgatcctgatcctaagaggaggccgaccatggcggaggttgcagctcggatgagggagatcaccgcgctgggtccggacggagcaactccgaaggtgtcgccgctgtggtgggctgagctggagatcatgtcctccgagagctaa
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| Protein seq | MELPCPRLLLLLRLLVFLVAVSWPLCGAGTEGLGVGEEGLSSIGASSGSRNVRRLLQTGGVNQGAPAPLPLEQSPSASGPVSSPSPSPWVSPPKGSPSPSPSSKIIAHRSPHHPFTTPPQLVRPKPTTRRAEHDHSVETTGRSWFKRSWTTYGFITAGIAALLIISAAGAFYCRAKKMGTVRPWATGLSGQLQKAFVTGVPALKRSELETACEDFSNIIGCTSTCTLYKGTLSSGVEIAVASSLVTSADDWSKECESRYRRKITSLSKVSHKNFMNLLGYCEEEQPFTRVMVFEYAPNGTLFEYLHVREAEKLDWMTRLRISMGIAYCLEHMHQLKPPVVPRNFDSTTIYLTDDFAAKVSDLEFWSGAKEPNPGTSNSSSSSDLENTVRKYGMVLLEMLTGRVPDSEEDGPLERLASRYFDGETRLAELIDPSIGSFSEEAARSLCEVVRSCIDPDPKRRPTMAEVAARMREITALGPDGATPKVSPLWWAELEIMSSES
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.041053 | 0.060213 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0294800 | RBH | 0.869219 | 0.740171 | 3.098175 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g18370 | RBH | 0.573247 | 0.485491 | 0.777770 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0294800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0014150 | RBH | 0.000000 | 10.997119 | 9.803928 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013970 | RBH | 0.0 | 1.595191 | 1.406122 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0013990 | RBH | 0.208695 | 7.053485 | 7.872131 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013970 | RBH | 0.034520 | 0.116727 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013770 | RBH | 1.563893 | 5.969306 | 7.775757 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0174300 | RBH | 15.266392 | 7.237949 | 1.238778 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013670 | RBH | 0.215706 | 0.315721 | 0.451192 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0175900 | RBH | 14.6079215 | 1.085221 | 5.1359585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0028340 | RBH | 0.041319 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013890 | RBH | 0.225668 | 5.398285 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013970 | RBH | 2.334717 | 10.941001 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013810 | RBH | 0.435316 | 0.833673 | 1.146259 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013770 | RBH | 0.000000 | 6.182070 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013720 | RBH | 0.216634 | 0.874084 | 1.814396 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013610 | RBH | 0.482976 | 8.021356 | 3.388809 |
