Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0013400 | OGI:03026870 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:10309320-10310133 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcacgtccatagctggggctcgccccacgccgccgagtccaggtccgagtcgtagaacggctggtacacggtggcgccgaagcctgcgccgccgctacagtactccgccgggtgcggcagcggcggcgccggcgcctggtattccagctgctggtcgtcgtcccggcggcggtgcgcgagctcgacgcagacgagggcgacgaggttgtcgtgctgcgcccgcgcgttgagcaggtcggcctgcgcgcgcgcgagctgcaccttgCTCGTTCGCCTCCTTCTGCAGCCGGCACACCGCCCCCGCGCACCCGTACACCGGGTCCCGCAGCCTCGCCTCCGCCTCGTACACCATGCTGCTCACCGCGTCCGCCCGCGCGCTCTCCGGCAATTCCTGCACGTTGCCGCACGTCGGTCGATCAGCAATGTGCCACGACGATCGATCGATCGAAATCCTCGCTCTTACGTGCGGGCGTACTATGTATATACCTGGAGGAGCTTGATGATGTTGCTGGCGCCGAACACGCGGTGCGCGGTAGTGAACTTGGTCGGTTCGGTAGGAGGGAAGTAAGGAGCCAGCACGCAGCCGTCGGCGCACCGGgcggcggagcaccttgcacgcggcgcacgggctcagcacgacggtcgtcgtcggtgacgacgacgacgacgtgttgcccaccagcaaggaggcggagccgacaggaggtggtggcggcgagcacgacgacaccctcgacggcggcgacacggaccgcccgtaatgcggctgctgcgccaccgtcacgttcgcgaccgtgttgccagcgtgatccat
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| CDS seq | atggatcacgctggcaacacggtcgcgaacgtgacggtggcgcagcagccgcattacgggcggtccgtgtcgccgccgtcgagggtgtcgtcgtgctcgccgccaccacctcctgtcggctccgcctccttgctggtgggcaacacgtcgtcgtcgtcgtcaccgacgacgaccgtcgtgctgagcccgtgcgccgcgtgcaaggtgctccgccgcCCGTTCACTACCGCGCACCGCGTGTTCGGCGCCAGCAACATCATCAAGCTCCTCCAGGAATTGCCGGAGAGCGCGCGGGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGAGGCGAGGCTGCGGGACCCGGTGTACGGAAGGAGGCGAACGAGcaaggtgcagctcgcgcgcgcgcaggccgacctgctcaacgcgcgggcgcagcacgacaacctcgtcgccctcgtctgcgtcgagctcgcgcaccgccgccgggacgacgaccagcagctggaataccaggcgccggcgccgccgctgccgcacccggcggagtactgtagcggcggcgcaggcttcggcgccaccgtgtaccagccgttctacgactcggacctggactcggcggcgtggggcgagccccagctatggacgtga
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| Protein seq | MDHAGNTVANVTVAQQPHYGRSVSPPSRVSSCSPPPPPVGSASLLVGNTSSSSSPTTTVVLSPCAACKVLRRPFTTAHRVFGASNIIKLLQELPESARADAVSSMVYEAEARLRDPVYGRRRTSKVQLARAQADLLNARAQHDNLVALVCVELAHRRRDDDQQLEYQAPAPPLPHPAEYCSGGAGFGATVYQPFYDSDLDSAAWGEPQLWT |
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| Function | LOB domain-containing protein 1 [UniProtKB/Swiss-Prot:Q9LQR0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0013400 | OsLima_03g0013400.01 | Chr03 | 10309320 | 10310133 | - | NAM | ||
| CDS seq | atggatcacgctggcaacacggtcgcgaacgtgacggtggcgcagcagccgcattacgggcggtccgtgtcgccgccgtcgagggtgtcgtcgtgctcgccgccaccacctcctgtcggctccgcctccttgctggtgggcaacacgtcgtcgtcgtcgtcaccgacgacgaccgtcgtgctgagcccgtgcgccgcgtgcaaggtgctccgccgcCCGTTCACTACCGCGCACCGCGTGTTCGGCGCCAGCAACATCATCAAGCTCCTCCAGGAATTGCCGGAGAGCGCGCGGGCGGACGCGGTGAGCAGCATGGTGTACGAGGCGGAGGCGAGGCTGCGGGACCCGGTGTACGGAAGGAGGCGAACGAGcaaggtgcagctcgcgcgcgcgcaggccgacctgctcaacgcgcgggcgcagcacgacaacctcgtcgccctcgtctgcgtcgagctcgcgcaccgccgccgggacgacgaccagcagctggaataccaggcgccggcgccgccgctgccgcacccggcggagtactgtagcggcggcgcaggcttcggcgccaccgtgtaccagccgttctacgactcggacctggactcggcggcgtggggcgagccccagctatggacgtga
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| Protein seq | MDHAGNTVANVTVAQQPHYGRSVSPPSRVSSCSPPPPPVGSASLLVGNTSSSSSPTTTVVLSPCAACKVLRRPFTTAHRVFGASNIIKLLQELPESARADAVSSMVYEAEARLRDPVYGRRRTSKVQLARAQADLLNARAQHDNLVALVCVELAHRRRDDDQQLEYQAPAPPLPHPAEYCSGGAGFGATVYQPFYDSDLDSAAWGEPQLWT
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0287400 | RBH | 0.332360 | 1.596900 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17810 | RBH | 0.196619 | 0.976485 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0287400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013630 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013450 | RBH | 0.0 | 0.0 | 0.252734 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0013480 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013450 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013290 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0168600 | RBH | 0.0435365 | 1.0546855 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0013200 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0170100 | RBH | 0.1228005 | 1.8376395 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0001700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013380 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013460 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013330 | RBH | 0.146990 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013280 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013230 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0013100 | RBH | 0.0 | 0.0 | 0.0 |
