Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0013140 | OGI:03026480 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:10111340-10115252 | ||||||||
| Gene Symbol | RLCK108, OsRLCK108, RLCK110, OsRLCK110, PTK5, OsPTK5 | ||||||||||
| DNA seq | tttaagtgcatccatactcaaatggactgagtttgatctgacacttgggtataaccttgaaccaaagttgtatccaaagagagaagctttaaccccttttaagtccatccatacaacaaatggacagaggttgaactgacacttcggtgtaaccttaaaacaaagttGtatccaaacacAaaaaaaactttaatcccttttaagtacatccatacaacaaagggaagcAaacgtgagacccATctcatcctgatttcaacataggagcaatgccatgaaaccatctggagatgctttcggagtatggagctctatgtcgaaagacaacaaaatgacaagcctcatccatgtacagaagaaaaggaacagaagttccctccagaaattcaaccatatgttccgaaatggaacagcgctgttcttcagtttctactactctcaggcagtaaccatcacggctcacgacacaaagagcaaggcttgagactaatagtgacagggaaaccatgttgctgttctgcaattgggcttcctagctgccttctccctgatccttggcttggttccaatcttctatcctcggttcagtcgatgcactggaacctacagatgattgcagacgagatgaccaccgctttctgctggattgtgactctgagatctgagtaagagcatcaactactgctgtgatatctggcctccggttggctgttctgtcaacacacagagcagcaacagtaagggcccggaacaaggacctcatgtggtactgaccgttaagcaccgggtctgctaatttgggaaaatcctttttgttgatcttggggatggcctgaaattatgcaacaaattaatggcgaaagaataactcgtaacaaagcatgtaagagccataatggaagcagttaacatatcagctgttttgtctcctttgttaacagttggtatcttccaattttgcttaaaattcaaggtacacaaagaaaatagatttcggccaaaggatataagttgaatgtgggggagtaaaataaaccctggatgaagctagaatctaaaatcgatctttactggctacttctctcatgacataatatgtaagactAaaaaaaatcgcgactgcaatgatgagacgaaatAaaaataacagaagcacacaagtctaagatgatcAaatagttgaagtaattatataaagatagtgttatgtgctctttcatgagcagacttgtgcatgcaggagaagcaaataacacaattaagttaaaacaggaagaaatggcttacccattcaacaatatttcgctcaggcttagctcgactgtcatctataaccttttGtcctgtgatgacctccaacatgaccacaccaaagctgtaaATatctgactggacggtcagtttaccactctcaagataatcaggagcacaatatccaagtgtgcccatcactctagtcgaaatatgagtgtcatcaccagttggacccatctttgccaagccaaagtcagaaagctttggatgatatccatctccaagcaaaatgttttcagatttcacgtcgcggtttatgacgggagggtcaacattgacatgcaagtgctgcaggcctttagctgccccgacaagtatcttgatccttgtgttccagtcaagaggcttcttatcaggggaaagatctggaaaaattaagacccagttctgattagacaaacttctaattatttagaagcagtgtaatgaaggagggaacTAtatatgttactagtttgtaacatactaacataccatggagatgacttttcagggaacccaaaggcatgtattcataaactaaaagcctctgatcaccatcctgacaacagccaataagcttgacaagatttgtgtgatgtagtttactcaacactgaagcttcggtgatgaactccctgtctccttgattgccttgtagattaagaatctttatagccacctcctgtccaattgcatggttcgagaattagagtggcacacaagtgaattagaccctacaagatcttctcacgagtcacggctatcaattttcacagacaaaaaaattgaaatgctacaggaggccacttcaattggagataaagagagtagtctgctacaagagcaaagtacaaacaaccacaaagagatcaagttgccacaaaagagctgcaacagaagaaagaacagcaaccaagttctaacaagagcaccaaactgactaagaaggacaaaaccaaataacagaaaggataataaagaggataatgattgacttggacatcttccttgttactacgccgaaatgcatgccgaacacccgtagatgatacatgcatcaaacactttcacattttccttaagcaaaccctaactgttcttatcaatttaacaatagcatgaattcgagaggaataatatacatgaaaggaaatactacagcaatccttttgtgtctaacagcttcaattctacctgagacccgtaatgttcacccagatacattagcaacaaaacatcatcttactttggtactacatacaaaccttaatcaactaaagaatttgcagaaacacatgttgcatgtacccacctgggagttatccagcacgcccctatacacctggccaaacccgccctctcctagaaagcgatcgtcactgaagccccctgtcgccgcatacagctccccgtaggtgaatgactggccatgaataagcctctccataccatggttcgagatggaatcagcatttgtggtatttaaattcacatccatctctgcagaaacaatgataacagatgagcatgaggcacactaatgcaatggtgtcagctatttaaattcaacaagagaaagaagacaaattaaaccaaaccattgtaagattgcagaacataaggtaataacattaacatatataagacaaagtaaaagtatttctactagtattgttatcaaaacaaccgaaagcaatacagacaaaaaagtaaaacacgcgtattttgtgatattactcccaccgttccaagaaaagccagtgaaagctgacaagaaacacccaagcggagaaccttactcaggagatcaggacaaaatcatgccaatgcccaaacaccatttctttacgaaatcaatactccactggcaagaaatcaagtAaagagtttcaACacctttcaaagaaaatcagaaCagcacaggcaaaccataatatgaaagaaagggcaattcaatgcccagaatcacgttccacgacattagttacaccatcggcaagaaaattaaacggactatctaaatttccaaaaaaaaaatctgattacttgcgacatagcacggattagaaaatagaaaaatcatggtgccttctgaactgttttttagaaggttcaaagcatcccaagttccaacttccagaaatAaaaagaattcaggtccatgccttgatgctaacgagcAaaaatctcaatatacgtttaagaacatcacaagtcataaccgatgaagcaaagataaggggaggaatccaaaaccacggtgatcgcgcgagagccagcaaccatcgcccgcccggtgaatccaagaaGggGAGTCAAGAACCCTCGCATAGGAAGTCAGAAAACCACGAAGCTCGACCAGTCATCGCCCATAAACGGGTCGAAACTCGAAACCAAGAAATTAATTAGCGCCGAAATCAGATTCCGAAGCAATGCTATGGCCAAGAACCGATGCCACGTTCGCGGAAGCAGAGGGTGTCAAGAGCAAGGGGAGGAGAGCCCGTAGGCCGTAGCATTAATTACCTGAGGCGGCCGTCTCGTCCGGTGTGATCTGTGGCCTCTCCGCGGACTCCTTCCTGCTCTCGTTGCCGCCCTCCGATGAGAAGCAGCTCCCCAT
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| CDS seq | ATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAGGAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGagatggatgtgaatttaaataccacaaatgctgattccatctcgaaccatggtatggagaggcttattcatggccagtcattcacctacggggagctgtatgcggcgacagggggcttcagtgacgatcgctttctaggagagggcgggtttggccaggtgtataggggcgtgctggataactcccaggaggtggctataaagattcttaatctacaaggcaatcaaggagacagggagttcatcaccgaagcttcagtgttgagtaaactacatcacacaaatcttgtcaagcttattggctgttgtcaggatggtgatcagaggcttttagtttatgaatacatgcctttgggttccctgaaaagtcatctccatgatctttcccctgataagaagcctcttgactggaacacaaggatcaagatacttgtcggggcagctaaaggcctgcagcacttgcatgtcaatgttgaccctcccgtcataaaccgcgacgtgaaatctgaaaacattttgcttggagatggatatcatccaaagctttctgactttggcttggcaaagatgggtccaactggtgatgacactcatatttcgactagagtgatgggcacacttggatattgtgctcctgattatcttgagagtggtaaactgaccgtccagtcagatATttacagctttggtgtggtcatgttggaggtcatcacaggaCaaaaggttatagatgacagtcgagctaagcctgagcgaaatattgttgaatgggccatccccaagatcaacaaaaaggattttcccaaattagcagacccggtgcttaacggtcagtaccacatgaggtccttgttccgggcccttactgttgctgctctgtgtgttgacagaacagccaaccggaggccagatatcacagcagtagttgatgctcttactcagatctcagagtcacaatccagcagaaagcggtggtcatctcgtctgcaatcatctgtaggttccagtgcatcgactgaaccgaggatagaagattggaaccaagccaaggatcagggagaaggcagctag
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| Protein seq | MGSCFSSEGGNESRKESAERPQITPDETAASEMDVNLNTTNADSISNHGMERLIHGQSFTYGELYAATGGFSDDRFLGEGGFGQVYRGVLDNSQEVAIKILNLQGNQGDREFITEASVLSKLHHTNLVKLIGCCQDGDQRLLVYEYMPLGSLKSHLHDLSPDKKPLDWNTRIKILVGAAKGLQHLHVNVDPPVINRDVKSENILLGDGYHPKLSDFGLAKMGPTGDDTHISTRVMGTLGYCAPDYLESGKLTVQSDIYSFGVVMLEVITGQKVIDDSRAKPERNIVEWAIPKINKKDFPKLADPVLNGQYHMRSLFRALTVAALCVDRTANRRPDITAVVDALTQISESQSSRKRWSSRLQSSVGSSASTEPRIEDWNQAKDQGEGS |
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| Function | Serine/threonine-protein kinase PBL27 [UniProtKB/Swiss-Prot:Q1PDV6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0013140 | OsLima_03g0013140.01 | Chr03 | 10111340 | 10115252 | - | NAM | ||
| CDS seq | ATGGGGAGCTGCTTCTCATCGGAGGGCGGCAACGAGAGCAGGAAGGAGTCCGCGGAGAGGCCACAGATCACACCGGACGAGACGGCCGCCTCAGagatggatgtgaatttaaataccacaaatgctgattccatctcgaaccatggtatggagaggcttattcatggccagtcattcacctacggggagctgtatgcggcgacagggggcttcagtgacgatcgctttctaggagagggcgggtttggccaggtgtataggggcgtgctggataactcccaggaggtggctataaagattcttaatctacaaggcaatcaaggagacagggagttcatcaccgaagcttcagtgttgagtaaactacatcacacaaatcttgtcaagcttattggctgttgtcaggatggtgatcagaggcttttagtttatgaatacatgcctttgggttccctgaaaagtcatctccatgatctttcccctgataagaagcctcttgactggaacacaaggatcaagatacttgtcggggcagctaaaggcctgcagcacttgcatgtcaatgttgaccctcccgtcataaaccgcgacgtgaaatctgaaaacattttgcttggagatggatatcatccaaagctttctgactttggcttggcaaagatgggtccaactggtgatgacactcatatttcgactagagtgatgggcacacttggatattgtgctcctgattatcttgagagtggtaaactgaccgtccagtcagatATttacagctttggtgtggtcatgttggaggtcatcacaggaCaaaaggttatagatgacagtcgagctaagcctgagcgaaatattgttgaatgggccatccccaagatcaacaaaaaggattttcccaaattagcagacccggtgcttaacggtcagtaccacatgaggtccttgttccgggcccttactgttgctgctctgtgtgttgacagaacagccaaccggaggccagatatcacagcagtagttgatgctcttactcagatctcagagtcacaatccagcagaaagcggtggtcatctcgtctgcaatcatctgtaggttccagtgcatcgactgaaccgaggatagaagattggaaccaagccaaggatcagggagaaggcagctag
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| Protein seq | MGSCFSSEGGNESRKESAERPQITPDETAASEMDVNLNTTNADSISNHGMERLIHGQSFTYGELYAATGGFSDDRFLGEGGFGQVYRGVLDNSQEVAIKILNLQGNQGDREFITEASVLSKLHHTNLVKLIGCCQDGDQRLLVYEYMPLGSLKSHLHDLSPDKKPLDWNTRIKILVGAAKGLQHLHVNVDPPVINRDVKSENILLGDGYHPKLSDFGLAKMGPTGDDTHISTRVMGTLGYCAPDYLESGKLTVQSDIYSFGVVMLEVITGQKVIDDSRAKPERNIVEWAIPKINKKDFPKLADPVLNGQYHMRSLFRALTVAALCVDRTANRRPDITAVVDALTQISESQSSRKRWSSRLQSSVGSSASTEPRIEDWNQAKDQGEGS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0283900 | RBH | 0.000000 | 0.000000 | 2.928623 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g17550 | RBH | 0.000000 | 0.000000 | 0.704489 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0283900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0013410 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0013220 | RBH | 0.0 | 0.0 | 0.376228 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0013250 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0013220 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0013070 | RBH | 0.0 | 0.0 | 0.666720 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0166200 | RBH | 0.187379 | 0.22358 | 0.5299965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0012980 | RBH | 0.0 | 0.093067 | 0.145336 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0167300 | RBH | 0.237263 | 0.7650995 | 1.078296 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_07g0028550 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0013160 | RBH | 0.107548 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0013220 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0013090 | RBH | 0.0 | 0.0 | 0.133489 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0013060 | RBH | 0.069614 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G013010 | RBH | 0.0 | 0.000000 | 0.418447 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012860 | RBH | 0.0 | 0.0 | 0.000000 |
