Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0012370 | OGI:03025150 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:9629195-9632975 | ||||||||
| Gene Symbol | RLCK107, OsRLCK107 | ||||||||||
| DNA seq | ggcccggggagactcacggctatactccaattgcagcaaaaccgccgccgcctccacctgctgctgctgctacagctggtggtacttatggagaagctcatcggggttatacttctgcccagtatgacaacttcagggagcgtccagactacccagagttccgtggtcgtggccgaggtgaaggtcatgttcttgagcaccgtggtcaattccctggtggtcgtgcttataattctggtggccgaagattctagagatggcttcttcaaacacagccaattggctcatctttcttgatctcagcttggtgcgaaatgcgaattgcattagatgcttggttgcagtctcgtttaaacctatatacatggaaaagctgtttacaatttaaactgctggtatgcaaccatcaaacaacaccagatgtcaccggcactgttgtgcttgttgtttccacctacaaccctgtaattctgcttctttgtaacttggtagagaaagatgagaataatttataccatactcccatggcttctctgttgttcatccatatcatgcaatgagaatAatatcagggaggcaattctgcgagcagaatgttccaagagaagcagttcaaaacatttatgaggacaatactaactgaagtttctgaggtgtactgctaaggtagcacaacagtttaacacaagccacgggctcgcagttggagcaaaggagcaacagctagctgtacaaaaagcaagatatattacacattatgttctcacggattcagaaagcctgtcctctgatcaagtccctcatcactctagttcctgtttttaactcctatcaaagtgtctcacgatcaggatgctccaggagaggtagagactggtctactggagacatttgacgacaccagacagccataattctacttggctgctttctttgcaccttgaagctgctccagcgcggtcacaacctgatccatgcccggcctgcatcgtgcatccattgacaggcactgcaccgcaagccccgcgatcttctgcgcagctggaagcgaatactgggatcccaggcgtgagtcgaggacatggatgaccctcctcttgttggtgatgtaaggtctagcccactccaccaggttgtgctgccccggaggccggttcttgtccagggcgcgctgcccggacagcaactccagaagaacaactccgtagctgtacacatcgctcttcgcggtcaaatggcctgcgcataatgtgggtgagaagaacacaaggtaccttcagaaaaccgctgttgacctttactgttagagtatgtgcacaaatgtagatttaaagaacatgatgctgcaattagtatcaggactagtgtgttgacttaagtggtaggaaaacgcaagtaggcacggcttctaattttatggttgttcatgctgaaaccagctggagaatcttagtttatcttcttttttcgggctatccaacgacgtggcaagcataaagtaccattttgattagcagaattggtcacctcgatgtttgcccctttacaggatgtcatgcatcattcttgagtatttaattcttaagcgtcacatggatggatcaacaattgtcaatcttaaagggattgctcagaggcatcaatcatgttatttgctactgaaaagaaatgttttatacctctaaatcgttatagagaaatcttaaataaaatgcacatctaagcacacttagtaaacatagcatataaaacttaagtgaatctagtggatatggcatgcacaccatgaagtatccatgtcttgcaatgaagattctctctccataacaaacgacaagtcttatgacccactgtcagcaaggcatctcagtatgttgcaaacaatgttgttactgaacataattaccagcaacagttatgacccagtgtccttttgtcattcatgcatgaatctaagatgcagaaaatcatagagacacagtagtagtatatggtttgttatatgtcatgttgcaaagatcacctgtcgcgagatattcaggggcagcatatccttgtgtccccatgaccctggttgagacatggcttttgtcaccactaggaccatcttttgccaatccaaaatcagagagttttgcattgtagtcctgtgtgcagccaaagggcaaaaacaaacatttagatcgaatctgatttgacttgcacatattgcgtatgtaaaccaatctgcatgctcactcaccgaatcaagaagaatgttggatgtcttgaaatctcggtaaataactttggcctgatcactgtgcaggaaagcaagccccctggcagcctcgagcgcgaccttcatccgcaaattccatgggagaggctggaagtgtgatccccctgcagcaccatacataagcattgccaatctttcattcccacgcacacaaagaatgaaaacatatgatgaacatgacacaaaaacgtggtggactgcttactcctgaaaaggtggtgctccaagctgcctctcggcatgaactcgtacaccagaagccgctgttcgtcctcgaagcagtagccgatgagcttgacaagatttgggtgggagagctgcccaaggtaattcacctcagcctgcaagattacagttttttttGggggggacacaaacagatcagttaaaatcactttCAGAcagcgctgacgcaggcagcaagaattgaaaaaactgaggaaaaaaagaagaagcagaggcactgaccagccattccctgtgcccctggaagctgtcaagcttgagcttcttcacggcgacgatcatgccggtgcccggcttgacgggcgtcagcgttcgctcatcgatccaccccttgaacaccgagccgaacccgccctccccaagcaggctgtccggccggaagttcctcgtggagcccttgagctcgccgaaggtgaacttgcggaggttcgacgactgcaggatctccgtctcgctccggggagtcggcggcaccgacgacgacgccgacgccttggtgccgaacgtgctggaatcggccccgttcttgctgctgttcttggaacctgtccctggattgcaaccacgacggtcagctcacagctcactcagcatagaaactctgcttctctttcctaaagaaattctcgtgtgaagcaaaccattcttggaagtagctctgctttctatatctagacaaagcctaactcgcctagctcaaaattgtgaaaaaaaattgtcatcactggacaattgatgataaatcccaaagtggaacctcactaaaattgctcttttactataaagagagcaaaaaaaaaaaacagagagatacAaaattgataccaaactgaaattttgactctttgtagaggaaccctgactcccaagaacagaaccaaaccaaaccaccgcaaaaatccaccaaaagaaaaggtaaggcaggcaccaacactgcaacacattgatttggtgcaacactgcaaaaaccaagaaacaagggcctggcacctgacgagttgggagcactgaacgaagggttgatctcggcgttcccctgcacgccggcgcagttccccatcacgagcacaccggcgccgcccgatcgacgtgcgtgcgtgcggcggcggcggccggcgttcctgccggttttctgtcggggttcttgcagactagctacgagcttagactagaacaacactgggtttctgactgggtagaacgaagctcaaggccggtgtggctttgtggtggtgtcatcccagcgtccccttc
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| CDS seq | atggggaactgcgccggcgtgcaggggaacgccgagatcaacccttcgttcagtgctcccaactcgtcagggacaggttccaagaacagcagcaagaacggggccgattccagcacgttcggcaccaaggcgtcggcgtcgtcgtcggtgccgccgactccccggagcgagacggagatcctgcagtcgtcgaacctccgcaagttcaccttcggcgagctcaagggctccacgaggaacttccggccggacagcctgcttggggagggcgggttcggctcggtgttcaaggggtggatcgatgagcgaacgctgacgcccgtcaagccgggcaccggcatgatcgtcgccgtgaagaagctcaagcttgacagcttccaggggcacagggaatggctggctgaggtgaattaccttgggcagctctcccacccaaatcttgtcaagctcatcggctactgcttcgaggacgaacagcggcttctggtgtacgagttcatgccgagaggcagcttggagcaccaccttttcaggaggggatcacacttccagcctctcccatggaatttgcggatgaaggtcgcgctcgaggctgccagggggcttgctttcctgcacagtgatcaggccaaagttatttaccgagatttcaagacatccaacattcttcttgattcggactacaatgcaaaactctctgattttggattggcaaaagatggtcctagtggtgacaaaagccatgtctcaaccagggtcatggggacacaaggatatgctgcccctgaatatctcgcgacaggccatttgaccgcgaagagcgatgtgtacagctacggagttgttcttctggagttgctgtccgggcagcgcgccctggacaagaaccggcctccggggcagcacaacctggtggagtgggctagaccttacatcaccaacaagaggagggtcatccatgtcctcgactcacgcctgggatcccagtattcgcttccagctgcgcagaagatcgcggggcttgcggtgcagtgcctgtcaatggatgcacgatgcaggccgggcatggatcaggttgtgaccgcgctggagcagcttcaaggtgcaaagaaagcagccaagtag
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| Protein seq | MGNCAGVQGNAEINPSFSAPNSSGTGSKNSSKNGADSSTFGTKASASSSVPPTPRSETEILQSSNLRKFTFGELKGSTRNFRPDSLLGEGGFGSVFKGWIDERTLTPVKPGTGMIVAVKKLKLDSFQGHREWLAEVNYLGQLSHPNLVKLIGYCFEDEQRLLVYEFMPRGSLEHHLFRRGSHFQPLPWNLRMKVALEAARGLAFLHSDQAKVIYRDFKTSNILLDSDYNAKLSDFGLAKDGPSGDKSHVSTRVMGTQGYAAPEYLATGHLTAKSDVYSYGVVLLELLSGQRALDKNRPPGQHNLVEWARPYITNKRRVIHVLDSRLGSQYSLPAAQKIAGLAVQCLSMDARCRPGMDQVVTALEQLQGAKKAAK |
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| Function | Receptor-like cytoplasmic kinase 176 [UniProtKB/Swiss-Prot:Q65XV8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012370 | OsLima_03g0012370.01 | Chr03 | 9629195 | 9632975 | - | NAM | ||
| CDS seq | atggggaactgcgccggcgtgcaggggaacgccgagatcaacccttcgttcagtgctcccaactcgtcagggacaggttccaagaacagcagcaagaacggggccgattccagcacgttcggcaccaaggcgtcggcgtcgtcgtcggtgccgccgactccccggagcgagacggagatcctgcagtcgtcgaacctccgcaagttcaccttcggcgagctcaagggctccacgaggaacttccggccggacagcctgcttggggagggcgggttcggctcggtgttcaaggggtggatcgatgagcgaacgctgacgcccgtcaagccgggcaccggcatgatcgtcgccgtgaagaagctcaagcttgacagcttccaggggcacagggaatggctggctgaggtgaattaccttgggcagctctcccacccaaatcttgtcaagctcatcggctactgcttcgaggacgaacagcggcttctggtgtacgagttcatgccgagaggcagcttggagcaccaccttttcaggaggggatcacacttccagcctctcccatggaatttgcggatgaaggtcgcgctcgaggctgccagggggcttgctttcctgcacagtgatcaggccaaagttatttaccgagatttcaagacatccaacattcttcttgattcggactacaatgcaaaactctctgattttggattggcaaaagatggtcctagtggtgacaaaagccatgtctcaaccagggtcatggggacacaaggatatgctgcccctgaatatctcgcgacaggccatttgaccgcgaagagcgatgtgtacagctacggagttgttcttctggagttgctgtccgggcagcgcgccctggacaagaaccggcctccggggcagcacaacctggtggagtgggctagaccttacatcaccaacaagaggagggtcatccatgtcctcgactcacgcctgggatcccagtattcgcttccagctgcgcagaagatcgcggggcttgcggtgcagtgcctgtcaatggatgcacgatgcaggccgggcatggatcaggttgtgaccgcgctggagcagcttcaaggtgcaaagaaagcagccaagtag
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| Protein seq | MGNCAGVQGNAEINPSFSAPNSSGTGSKNSSKNGADSSTFGTKASASSSVPPTPRSETEILQSSNLRKFTFGELKGSTRNFRPDSLLGEGGFGSVFKGWIDERTLTPVKPGTGMIVAVKKLKLDSFQGHREWLAEVNYLGQLSHPNLVKLIGYCFEDEQRLLVYEFMPRGSLEHHLFRRGSHFQPLPWNLRMKVALEAARGLAFLHSDQAKVIYRDFKTSNILLDSDYNAKLSDFGLAKDGPSGDKSHVSTRVMGTQGYAAPEYLATGHLTAKSDVYSYGVVLLELLSGQRALDKNRPPGQHNLVEWARPYITNKRRVIHVLDSRLGSQYSLPAAQKIAGLAVQCLSMDARCRPGMDQVVTALEQLQGAKKAAK
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012370 | OsLima_03g0012370.02 | Chr03 | 9629695 | 9632912 | - | IsoSeq | ||
| CDS seq | atgcaggccgggcatggatcaggttgtgaccgcgctggagcagcttcaaggtgcaaagaaagcagccaagtagaattatggctgtctggtgtcgtcaaatgtctc |
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| Protein seq | MQAGHGSGCDRAGAASRCKESSQVELWLSGVVKCL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 9632266 | 9632712 | - | OsLima_03g0012370.01 | OsLima_03g0012370.01,OsLima_03g0012370.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.073622 | 0.268811 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0274800 | RBH | 1.351897 | 1.588635 | 5.207871 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g16740 | RBH | 0.869219 | 0.674835 | 1.033244 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0274800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0012680 | RBH | 0.571890 | 19.860991 | 4.072548 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012500 | RBH | 0.134223 | 1.880992 | 2.111104 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012510 | RBH | 2.161213 | 6.648528 | 4.968763 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012470 | RBH | 0.124631 | 0.296270 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012340 | RBH | 1.859454 | 15.010368 | 15.270916 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0158000 | RBH | 8.159892 | 16.0985145 | 35.887312 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0012240 | RBH | 0.430540 | 0.518339 | 1.248586 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0158700 | RBH | 8.982808 | 8.9409985 | 15.6477315 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_05g0000830 | SBH | 0.670468 | 0.753461 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012430 | RBH | 0.000000 | 15.052153 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012450 | RBH | 3.158567 | 12.647771 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012360 | RBH | 0.637532 | 0.000000 | 0.532366 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012320 | RBH | 0.105416 | 3.920906 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G012290 | RBH | 0.133952 | 2.299830 | 1.981555 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0012150 | RBH | 0.000000 | 3.257536 | 4.641481 |
