Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0012070 | OGI:03024100 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:9302142-9304264 | ||||||||
| Gene Symbol | OsSAG13 | ||||||||||
| DNA seq | taggccccctatccacgcagtatttcgttttgttgctcgcaacaaacgTttttttttaatttagtacagtagcatgcggtgcatacccaagtgcaaaccaatcaagttcacaagcatctatttgcgatctcctgtttgtttgggatagttgagttttactgacgttcgagcctcacctctgacctctccaaacacagttcttcgatccccatacggccatacggtttgcctattcggtctagtcctgagttggatacagtccgtttatggtcatgccgccgtcgaccgagatcgtctggccggtgatgtaggaagcgccgggcatgcacaggaacgcgaccagcgatgacacctcttctggttctcccAcgcgcttcagcgctgttcgacgcacgacgctgtcagcgaagtccttccttgccaattcctgcagagccaaaacaagcgaaacaaaactattcagaacaagctggccacatagttttcgactatggttttgatgtagaagtacaaattaaggagagcagacaagaatgcatgaatctctataccgaatgataacactggatccagaagtcaattttgatgcattaacggtgcaaccaaatatctaccttacagtaaattcagatgagcaacggaagcaaatgctacctatgaagctatgactaatcaaagcaaaagaggcagtgccttacatcttccacaagtgaagtcttcatgtaccatggtgcaacagaattggttcttatattgtctttcgcccactcacatgccaggttcttggccagctggttcatggcacctaaacaacacccgaagatatctcgcaagaatcatcaacgatgcatatcggctttttcacctatgccatccatgaaaaaaaatgcatgtactgCggtaatatatattgtaccttttgtcatcgcatagacagagccagaacttacagccaccactccagagactgacgatatgaagacaacgcttcctgacccagatgatttgagaagaggatgagcaagttggcacagatgatacgcagattcaagattggtggccattatgaacgagtaatcatctgcagagtattcagtggtttgttttgaaaagtttgttcccacgttgttcacctgcataccaaaatgcgaaaacatgaaagaaatcaactgcaggtctacaacagtagagctgagggttgtcAaagtaacacatttctcaaagtaactcaaatgttcgatgaatttcagtgctaaagtggcacctagccttgatgttatatAtgcaaactctccgctaaacatgaactctgacttaccaactaagcatcatgactagcaggcagcaaagtggttcagccatggtcacatctatGatttatgcattactaaccatgtagatgAaaatcgagagagtcatgcttgatcgaaattGggttcaGtgacgagaaaggctgggacctagatggggaagcaaggagttaaattgaggagagataaagagaaactaagcgaagtgctttacgaggatgtcgagcttgccaccgtagaggccggcgacctcgcggagcatgcgttcccgctgctcccgcacggagacgtcgcagactgagccggtgacgcggaagcccttgccctcccactccctgaggcgctcgcccagctcggcctccttcctggagcaggtgtgcacggccgcccccagcgccgccagctcgtccaccaccgcatgcctgcgcatgaattccccgcgttgatcgtggaagagcagcaaaggctctgcggtggaggtctcactcctcactgggtagcgataGgggagaaccagagaagggtGttggggtgagtacccgatgccgcgggtgccgccggtgacgagggccgtcttgccgcggagggtccatctccccgctgcgccgcttgcgaccgcctcggccatcggcctcgagggtgcggctgggaataattttgcgagaaaatccgtattatcagttcttcgggaaaaactcccgattcgggttgttggctcgtcgccagtattcggcgttattattcagaaaagtcactgatcgatcggtagctattccggttgtttcctgaaaatatcccaatcgaaattttcac
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| CDS seq | atggccgaggcggtcgcaagcggcgcagcggggagatggaccctccgcggcaagacggccctcgtcaccggcggcacccgcggcatcgggtactcaccccaaCacccttctctggttctcccCtatcgctacccagtgaggagtgagacctccaccgcagagcctttgctgctcttccacgatcaacgcggggaattcatgcgcaggcatgcggtggtggacgagctggcggcgctgggggcggccgtgcacacctgctccaggaaggaggccgagctgggcgagcgcctcagggagtgggagggcaagggcttccgcgtcaccggctcagtctgcgacgtctccgtgcgggagcagcgggaacgcatgctccgcgaggtcgccggcctctacggtggcaagctcgacatcctcgtgaacaacgtgggaacaaacttttcaaaacaaaccactgaatactctgcagatgattactcgttcataatggccaccaatcttgaatctgcgtatcatctgtgccaacttgctcatcctcttctcaaatcatctgggtcaggaagcgttgtcttcatatcgtcagtctctggagtggtggctgtaagttctggctctgtctatgcgatgacaaaaggtgccatgaaccagctggccaagaacctggcatgtgagtgggcgaaagacaatataagaaccaattctgttgcaccatggtacatgaagacttcacttgtggaagatgaattggcaaggaaggacttcgctgacagcgtcgtgcgtcgaacagcgctgaagcgcgTgggagaaccagaagaggtgtcatcgctggtcgcgttcctgtgcatgcccggcgcttcctacatcaccggccagacgatctcggtcgacggcggcatgaccataaacggactgtatccaactcaggactag
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| Protein seq | MAEAVASGAAGRWTLRGKTALVTGGTRGIGYSPQHPSLVLPYRYPVRSETSTAEPLLLFHDQRGEFMRRHAVVDELAALGAAVHTCSRKEAELGERLREWEGKGFRVTGSVCDVSVREQRERMLREVAGLYGGKLDILVNNVGTNFSKQTTEYSADDYSFIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVEDELARKDFADSVVRRTALKRVGEPEEVSSLVAFLCMPGASYITGQTISVDGGMTINGLYPTQD |
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| Function | Tropinone reductase homolog At5g06060 [UniProtKB/Swiss-Prot:Q9LHT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012070 | OsLima_03g0012070.02 | Chr03 | 9302142 | 9304264 | - | NAM | ||
| CDS seq | atggccgaggcggtcgcaagcggcgcagcggggagatggaccctccgcggcaagacggccctcgtcaccggcggcacccgcggcatcgggtactcaccccaaCacccttctctggttctcccCtatcgctacccagtgaggagtgagacctccaccgcagagcctttgctgctcttccacgatcaacgcggggaattcatgcgcaggcatgcggtggtggacgagctggcggcgctgggggcggccgtgcacacctgctccaggaaggaggccgagctgggcgagcgcctcagggagtgggagggcaagggcttccgcgtcaccggctcagtctgcgacgtctccgtgcgggagcagcgggaacgcatgctccgcgaggtcgccggcctctacggtggcaagctcgacatcctcgtgaacaacgtgggaacaaacttttcaaaacaaaccactgaatactctgcagatgattactcgttcataatggccaccaatcttgaatctgcgtatcatctgtgccaacttgctcatcctcttctcaaatcatctgggtcaggaagcgttgtcttcatatcgtcagtctctggagtggtggctgtaagttctggctctgtctatgcgatgacaaaaggtgccatgaaccagctggccaagaacctggcatgtgagtgggcgaaagacaatataagaaccaattctgttgcaccatggtacatgaagacttcacttgtggaagatgaattggcaaggaaggacttcgctgacagcgtcgtgcgtcgaacagcgctgaagcgcgTgggagaaccagaagaggtgtcatcgctggtcgcgttcctgtgcatgcccggcgcttcctacatcaccggccagacgatctcggtcgacggcggcatgaccataaacggactgtatccaactcaggactag
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| Protein seq | MAEAVASGAAGRWTLRGKTALVTGGTRGIGYSPQHPSLVLPYRYPVRSETSTAEPLLLFHDQRGEFMRRHAVVDELAALGAAVHTCSRKEAELGERLREWEGKGFRVTGSVCDVSVREQRERMLREVAGLYGGKLDILVNNVGTNFSKQTTEYSADDYSFIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVEDELARKDFADSVVRRTALKRVGEPEEVSSLVAFLCMPGASYITGQTISVDGGMTINGLYPTQD
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012070 | OsLima_03g0012070.01 | Chr03 | 9302142 | 9304264 | - | NAM | ||
| CDS seq | atggccgaggcggtcgcaagcggcgcagcggggagatggaccctccgcggcaagacggccctcgtcaccggcggcacccgcggcatcgggcatgcggtggtggacgagctggcggcgctgggggcggccgtgcacacctgctccaggaaggaggccgagctgggcgagcgcctcagggagtgggagggcaagggcttccgcgtcaccggctcagtctgcgacgtctccgtgcgggagcagcgggaacgcatgctccgcgaggtcgccggcctctacggtggcaagctcgacatcctcgtgaacaacgtgggaacaaacttttcaaaacaaaccactgaatactctgcagatgattactcgttcataatggccaccaatcttgaatctgcgtatcatctgtgccaacttgctcatcctcttctcaaatcatctgggtcaggaagcgttgtcttcatatcgtcagtctctggagtggtggctgtaagttctggctctgtctatgcgatgacaaaaggtgccatgaaccagctggccaagaacctggcatgtgagtgggcgaaagacaatataagaaccaattctgttgcaccatggtacatgaagacttcacttgtggaagatgaattggcaaggaaggacttcgctgacagcgtcgtgcgtcgaacagcgctgaagcgcgTgggagaaccagaagaggtgtcatcgctggtcgcgttcctgtgcatgcccggcgcttcctacatcaccggccagacgatctcggtcgacggcggcatgaccataaacggactgtatccaactcaggactag
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| Protein seq | MAEAVASGAAGRWTLRGKTALVTGGTRGIGHAVVDELAALGAAVHTCSRKEAELGERLREWEGKGFRVTGSVCDVSVREQRERMLREVAGLYGGKLDILVNNVGTNFSKQTTEYSADDYSFIMATNLESAYHLCQLAHPLLKSSGSGSVVFISSVSGVVAVSSGSVYAMTKGAMNQLAKNLACEWAKDNIRTNSVAPWYMKTSLVEDELARKDFADSVVRRTALKRVGEPEEVSSLVAFLCMPGASYITGQTISVDGGMTINGLYPTQD
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 9303666 | 9304264 | - | OsLima_03g0012070.02 | OsLima_03g0012070.02,OsLima_03g0012070.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.027707 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0269100 | RBH | 4.612769 | 4.302548 | 7.551173 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g16230 | RBH | 3.124272 | 2.777268 | 1.683011 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0269100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0012370 | RBH | 2.317233 | 10.858553 | 6.371341 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012200 | RBH | 0.650894 | 1.587919 | 6.261675 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012220 | RBH | 3.920015 | 11.002394 | 10.488108 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012170 | RBH | 0.521777 | 0.219248 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012030 | RBH | 35.209637 | 15.444762 | 46.616661 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0151400 | RBH | 11.2054775 | 12.312757 | 1.276331 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0011930 | RBH | 1.793904 | 1.295893 | 3.638176 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0153100 | RBH | 15.4277215 | 15.445882 | 4.169488 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0012060 | SBH | 0.318790 | 0.195219 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012120 | RBH | 2.369661 | 5.058969 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012130 | RBH | 30.213427 | 32.521156 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012060 | RBH | 5.762196 | 3.115502 | 8.557657 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012000 | RBH | 1.379105 | 8.356535 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011971 | SBH | 0.179901 | 0.000000 | 3.586922 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0011840 | SBH | 0.897879 | 7.139131 | 13.309161 |
