Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0012050 | OGI:03024080 | 9/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:9290377-9293348 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | attaccagcgttctacgcaatgggtgtgaatccaaacaaacgatctggaaacatcactggatcacagatgaaaggtactaaccatcactgaatcacagatgaaaggtaattaagacggaggcacaaagtatttgcgcaatatctagctaacaacgcctccatcacatagttctgaaagggcttgtgcaatggaaaaatatatcacgcgtccatgatggactcactttcacacaagtgtttttcaccttttctttagtttctaacaaccaactccacgaatatcagacgcgctgtttcctggcagcaagaacatccatcatccatgactccctcctcaactggggtaaagcccattcacagtcatacctccatcgacggcgatcgtctgaccagtaatgtaagttgaaccaggcatacaaaggaaggcaactaacgatgagatttctgctggttctccgacacgcctaagaggagtccggctcttaacagagccctcgaactccttgtttgccaaaatctgttcgaagaataaaaATatacgagatgtgggttcagcgtgttgaagatatcgaaataaagtgaactattgaacagtgtaacatttggaagcaacacacttgggcaaaatataactataggccgtgtttagttgtttaggtgtaaaaattttgacgtatacggacacatatttgaaatattaaacgtagtctaataacaaaacaaattataaattccgcctataaactgctagacgaatcaagcctaattaatccgtcattagcaaatgtttactgtagcaccacattatcaaatcatggcgtaattaggctgaaaagattcgtctcgcaatttacatgcaagctgtgcaattggTttttttttgtccacatttaatgctacgtgcatgtgttcAaacatttgatgtgacggaatttttggaagtttgaagggaactaaacacagcgtatgatttatgcttgtatactaatgattgacaaggatggtgaagcagctattgacaagacatggagacttctaagaagtaattacgtagggatcgtgcttgattgcttcaaaaccttcatttctaatcttaatagtgatatacaattaTtttgcatatttttccaaaaaagggcactttgaagcaccaacatctaaacagttatatgggggaataaaggatagtcatgaagcaaatgcagcctagcagcaaccagcacacttcatcatagtagaagccacatgatattccgacttattaatacagtgaaacttagtaaattaacacaagaagacacttactccttctgaaagcgaagttaagatgtaccctggggcaacacagttggttcttatgttgtcttttgcccattcacatgctaagttcttggttaattgattcatggcacctacacaaatcttgtagacagaacaaagtcatgatcatatatgctggtaaataaaatggacattcatagtgagctataactattacctttagtcatagcatagatagttccactaaatagggctacaattccagcaactgatgatatgaaaacaatgctacccgacccagatgcttttaaaagaggatgcccaagttgacacaaatgatatgcagattcaagatttgtagccatcaaaaatgagtattcgtctgcagaatactcagtagtaggtttccttatgtttgtccccacattgtttacctagaagagcaaatgaagaacggcaacataaatcatcaagtgacaaactaaagcaggcgcaataaacatgtaaattaacaaagcaaaggtattgcagcaagaaaaTatacatggagagtgctcacaagtcagaactcaatcttgggtcaaattgcaaattgatgtatgataaatactacgggcatcaaatattcaaatccattagctccaggcagttctaggttagcaccaaacattattgggcactgggcagtagtgggcttgggttggtgaggtctaaaaggcaatttttcaccatgtcttatgagtagtgctgctatcaggaatttccattcaatcttgtgctcacatttttcttctattgaattgaaccatgctatatgcctgtgcagcgtgaaaataagacattcaattgggacttcatttctgaacataaagctatttataaatccctctctttctgcagcaacggaggtgcttgcttggggaagtggttcagtcaaagcctcgaaatgtcgattacaagtaggtaatcttagatattcaaactgcaagcagcaaatgtataataatgaatgcgccgatccaagcacagtcgaagctgccactgaaggggagatatgcatcaccaccatgaccactaaaatgtttcagctgacaaaacgggaaatggcaaatgtttatcctgaacattcatttctttgagatataccaatactgcgttcaactgaatggggattggggagggattagtccaacttcgaactcacgaggatgtcgagcttgccgccgaagcggtcagcgacgtcgccgatgaggcgctcccgctggtcccgcgcggagaggtcgcagacggagatggtgacgcggaaccccctggcctcccactccttgaggcgctcccctagctccgcctcattgcgggagcaggtatgcacggccgcccccagcgccgccagctcctccaccaccgcacgcctgcgccgccaccaaaacgaaccgcctcgcgtcaaccgtcgagggaatcttgcagtctcagtgtgtcactagggaatcatgcaaccgtcggggtcggggagagagaatatacccaatcccgcgggtgcctccggtgaccagagccatcttgccatggagagaccacctccccggcgccgccaccgtgcccgaGgtctccgccgcggccatctccccGgttacggctgtctcgccggtcggtccggccggccctgcttccgcttatccgttcaccacaac
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| CDS seq | atggccgcggcggagacCtcgggcacggtggcggcgccggggaggtggtctctccatggcaagatggctctggtcaccggaggcacccgcgggattgggcgtgcggtggtggaggagctggcggcgctgggggcggccgtgcatacctgctcccgcaatgaggcggagctaggggagcgcctcaaggagtgggaggccagggggttccgcgtcaccatctccgtctgcgacctctccgcgcgggaccagcgggagcgcctcatcggcgacgtcgctgaccgcttcggcggcaagctcgacatcctcgtaaacaatgtggggacaaacataaggaaacctactactgagtattctgcagacgaatactcatttttgatggctacaaatcttgaatctgcatatcatttgtgtcaacttgggcatcctcttttaaaagcatctgggtcgggtagcattgttttcatatcatcagttgctggaattgtagccctatttagtggaactatctatgctatgactaaaggtgccatgaatcaattaaccaagaacttagcatgtgaatgggcaaaagacaacataagaaccaactgtgttgccccagggtacatcttaacttcgctttcagaaggaattttggcaaacaaggagttcgagggctctgttaagagccggactcctcttaggcgtgtcggagaaccagcagaaatctcatcgttagttgccttcctttgtatgcctggttcaacttacattactggtcagacgatcgccgtcgatggaggtatgactgtgaatgggctttaccccagttga
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| Protein seq | MAAAETSGTVAAPGRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLKEWEARGFRVTISVCDLSARDQRERLIGDVADRFGGKLDILVNNVGTNIRKPTTEYSADEYSFLMATNLESAYHLCQLGHPLLKASGSGSIVFISSVAGIVALFSGTIYAMTKGAMNQLTKNLACEWAKDNIRTNCVAPGYILTSLSEGILANKEFEGSVKSRTPLRRVGEPAEISSLVAFLCMPGSTYITGQTIAVDGGMTVNGLYPS |
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| Function | Tropinone reductase homolog At5g06060 [UniProtKB/Swiss-Prot:Q9LHT0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012050 | OsLima_03g0012050.01 | Chr03 | 9290377 | 9293348 | - | NAM | ||
| CDS seq | atggccgcggcggagacCtcgggcacggtggcggcgccggggaggtggtctctccatggcaagatggctctggtcaccggaggcacccgcgggattgggcgtgcggtggtggaggagctggcggcgctgggggcggccgtgcatacctgctcccgcaatgaggcggagctaggggagcgcctcaaggagtgggaggccagggggttccgcgtcaccatctccgtctgcgacctctccgcgcgggaccagcgggagcgcctcatcggcgacgtcgctgaccgcttcggcggcaagctcgacatcctcgtaaacaatgtggggacaaacataaggaaacctactactgagtattctgcagacgaatactcatttttgatggctacaaatcttgaatctgcatatcatttgtgtcaacttgggcatcctcttttaaaagcatctgggtcgggtagcattgttttcatatcatcagttgctggaattgtagccctatttagtggaactatctatgctatgactaaaggtgccatgaatcaattaaccaagaacttagcatgtgaatgggcaaaagacaacataagaaccaactgtgttgccccagggtacatcttaacttcgctttcagaaggaattttggcaaacaaggagttcgagggctctgttaagagccggactcctcttaggcgtgtcggagaaccagcagaaatctcatcgttagttgccttcctttgtatgcctggttcaacttacattactggtcagacgatcgccgtcgatggaggtatgactgtgaatgggctttaccccagttga
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| Protein seq | MAAAETSGTVAAPGRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLKEWEARGFRVTISVCDLSARDQRERLIGDVADRFGGKLDILVNNVGTNIRKPTTEYSADEYSFLMATNLESAYHLCQLGHPLLKASGSGSIVFISSVAGIVALFSGTIYAMTKGAMNQLTKNLACEWAKDNIRTNCVAPGYILTSLSEGILANKEFEGSVKSRTPLRRVGEPAEISSLVAFLCMPGSTYITGQTIAVDGGMTVNGLYPS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012050 | OsLima_03g0012050.02 | Chr03 | 9291449 | 9293348 | - | NAM | ||
| CDS seq | atggccgcggcggagacCtcgggcacggtggcggcgccggggaggtggtctctccatggcaagatggctctggtcaccggaggcacccgcgggattgggcgtgcggtggtggaggagctggcggcgctgggggcggccgtgcatacctgctcccgcaatgaggcggagctaggggagcgcctcaaggagtgggaggccagggggttccgcgtcaccatctccgtctgcgacctctccgcgcgggaccagcgggagcgcctcatcggcgacgtcgctgaccgcttcggcggcaagctcgacatcctcgtaaacaatgtggggacaaacataaggaaacctactactgagtattctgcagacgaatactcatttttgatggctacaaatcttgaatctgcatatcatttgtgtcaacttgggcatcctcttttaaaagcatctgggtcgggtagcattgttttcatatcatcagttgctggaattgtagccctatttagtggaactatctatgctatgactaaaggtgccatgaatcaattaaccaagaacttagcatgtgaatgggcaaaagacaacataagaaccaactgtgttgccccagggtacatcttaacttcgctttcagaaggagtaagtgtcttcttgtgttaa
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| Protein seq | MAAAETSGTVAAPGRWSLHGKMALVTGGTRGIGRAVVEELAALGAAVHTCSRNEAELGERLKEWEARGFRVTISVCDLSARDQRERLIGDVADRFGGKLDILVNNVGTNIRKPTTEYSADEYSFLMATNLESAYHLCQLGHPLLKASGSGSIVFISSVAGIVALFSGTIYAMTKGAMNQLTKNLACEWAKDNIRTNCVAPGYILTSLSEGVSVFLC
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012050 | OsLima_03g0012050.03 | Chr03 | 9290420 | 9293326 | - | IsoSeq | ||
| CDS seq | agcagggccggccggaccgaccggcgagacagccgtaacCggggagatggccgcggcggagacCtcgggcacggtggcggcgccggggaggtggtctctccatggcaagatggctctggtcaccggaggcacccgcgggattgggcgtgcggtggtggaggagctggcggcgctgggggcggccgtgcatacctgctcccg
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| Protein seq | SRAGRTDRRDSRNRGDGRGGDLGHGGGAGEVVSPWQDGSGHRRHPRDWACGGGGAGGAGGGRAYLLP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr03 | 9291682 | 9292091 | - | OsLima_03g0012050.03 | OsLima_03g0012050.03,OsLima_03g0012050.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.294686 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0268900 | RBH | 4.110934 | 3.346412 | 5.117951 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g16210 | RBH | 2.399832 | 2.023134 | 1.148755 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0268900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0012350 | RBH | 1.117406 | 10.747149 | 4.526597 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012180 | RBH | 0.495809 | 1.431668 | 1.307393 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012200 | RBH | 3.401265 | 7.303399 | 4.215276 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012150 | RBH | 0.210504 | 0.025965 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0012030 | SBH | 35.209637 | 15.444762 | 46.616661 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0151300 | SBH | 10.350123 | 8.417524 | 16.9740115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0011930 | SBH | 1.793904 | 1.295893 | 3.638176 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0153000 | RBH | 14.6960945 | 10.80482 | 21.737131 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_03g0012060 | RBH | 0.318790 | 0.195219 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012120 | SBH | 2.369661 | 5.058969 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012130 | SBH | 30.213427 | 32.521156 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012060 | SBH | 5.762196 | 3.115502 | 8.557657 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0012000 | SBH | 1.379105 | 8.356535 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011970 | RBH | 0.213019 | 2.803585 | 1.124748 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0011840 | SBH | 0.897879 | 7.139131 | 13.309161 |
