Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0012000 | OGI:03023940 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:9248309-9254006 | ||||||||
| Gene Symbol | ATG1A, OsATG1a | ||||||||||
| DNA seq | gcagtgtaaaagcccaaattttaatgaacaaaccatcgaggtagcagtctgctttacatgtcCAcaaacgaccatggtcgggccttcagctgccaacctgagctgcctgataatcaggcgtaccatgcaagcacaccgagctcacgttacagtaggcagtttgggcaagttacactggatttttcgctacttctccctaatcggagcacgttctcagacatgacatatcttacacgccctcgtttgggccaacgaatatatgtacaggatgaaagaatattgtacaggtgagcggtcagtgccgctggtattgcaacgggacgagcctagcgttaacggcttcaatgtatgtgcgcaggcggcgtcgatcatctcttgttagggacagagcggggttcagggcgagtgacggtgcctcagtcaggagaaagcgcagcatggatactgccttcgagtacagcaccatggcagatgctgatttccccatcatctcatcaacctgcaatttagcataacaaaacacacaaaaagagtgggataagagtgcacaccaagctttcgttctgctatgtaagacagtgtgcttgatattgacttacaccaccatgtcttcccaggttaagcgcggtctgaaatatgatttctatcgcatctggcatttctgtagcatctgcaagcataagctcacaatcagcaattcagcattcaagaagttcaaccaacgatttaaagctcctaggcaaggtaacataccaactgtctgtcctatagtgttggcaagttcttcagcatattccatttgaaccaaaaactgactctctatctccatgcatgtatcatataacagttgagagtttgcaagcaaatggggagcatttgagccAaaacccttcgcggtgacatcatgggaaggattctctcttgtggcagaagatgcataagaagtgcagatgtaaattgcttgcttccaggttgcaagaacaactagctgaatcgagaatccctctaagtgcttggcatctttaatctacaaaagtttgggtggttgatcagcaaaacaaaagcatggttagcatttgcaattgcatagataaagacttgtctcaggcagatgaatgaaacacaagaccttagtttatatggtaaataagcttcaccacaatgttttggacagagaatccaaacatatcaaaaggatgagaactttggtcaatgttaaacagaaggaagtcaaataggaggcaaggaaatttgagtccactgagaagaaagttaccttttctttcaccaattctgctatggtagacgcatactgctccaataatctaaccctggtcagacaatcagatggtggttgatccatagcatcgttgagatctgcagatccttgtgaagtaccagatactggagagcagtgactgtccaagctaccagttccaccagattgctgtctgttaattgccatgccatgtattggccttggtgcactcacagcagttaataacttcggtggtgaaagagaagaactgtcaagttttgatggcatggtgcgctgtcgggagtcattcatcgaagaggaggatccctctgggtgcacaaagacatattcctgatctacaaactctaatgaatcaatgataggggaatctacatttacaagtaaggaaataacaaatttagtaagaactttttcacaattataatgaaacatgtgatagtcacaacagactgcaataccttctggataaccacctttagggttgtgcccttcatcacccttgttttccttgattctcctaggatggtccaggcgttgactactagatgcgtaattatttcccctaatatatttagagaccagacttgaatgtttcgttggactctgacctgaagttttatcaagccttttactcgtggcaaacccataggattttattgcactcttactatcagaaacaggaccttcatcctgtccagttgactcatcatccaaaggaaaaggcatacaatcttcctgagaactttggcttgaaggtctcgtaggactgctattaatgaatggaaagccatctcttatgtccgatggtgtccggctgtcaatgcaatacagaatatcaaacatgtcacgtgatgctgtagaagtaaaactatagcaaagaatatattacctcaaggttctctccaaagcatgttcagcgagaaatggatggttcacaaactcttcaacggtaaggcgttccactgcattaatattggcacagaatcattaagtattaattctcacttgtaacgtcagcataacaataatcatgtaaagtgatagttaatctgctacttttgaacaaacttaagttgctttataagtgcgacagcccacagggtttcaggattatgacagacagtaagcagtggtataaactgatcgagtgaagaaaccatacaactgcaatggcttctaacacattgttgatcagataaactactgagaagcaaccaaatatataaacttccttgggtgcagcatagttcatgagttgtgtcctgctgcatgccatggagtgtaacatatttcctgcaacagctttatacacgcagaaccttttttttttctagcacgaataaatctctaagctgtcttcatgtaagacatactgattacaagactacatctagaaggtcacatgtgaataatataggtgagaaaacagggactaattacaatgtcacccacccaagtctactcttgcatgatagtcattcatgtttttctttggcgtaatatcagtcatgtcacagtataattctggaaaattttacccttcctggtaaggatgtaagaaaaaataatgacatgtggaagtcttatgaaacttgtttttatatataactatacataagtgtagcagaggattcgtacctgaattgattcgcagtaactttctgcataagtcaatgcagccatggctcaagtcgcaatcagatggaaatcgtatttctcgtgtattgagtatatttctcagcaactgatgggaaataacatttttcagtagtagcctgatttaataatgcactagaaatcaggtcatgtggaaaatttgaataaacctggatttgactatccccggtaaaaggaggagatccggtaacaagttgatatagaattataccaacactccacaaatctgcctgttctgtcagaaatcgggcatgaagcacgagtcaagaacaggtaaaagtacatgataaagctcacaaggaagcagaaaaaagccctgacctttgcatcatacttctgagcttgcatgacttctggagccatgtaaagcggtgaaccgcaaagtgtttcagccagagaagaaggttctaaaaacctgcttgcaagaatagaaaaggtaagtacacatttctgatactatccgcgtctaaccctcccaccaagcctcacttgatccaaccatcgatgaatgagaagcagagagaaagctgaggtgccaattttgtcatggctgtaattaaatatgcaaggaagcagagaaacacaggatcaagcacaaagcaacatgatcttattctctttccctgcacgatacttatctagttgtcctcaagaatgtttcgtacttagcttttatgcacagatttttgtgtaaaactctgtgtgaattcaaaggacattacattacggagtaggactgttcaataaaaaaaagtagaattgagtgtagagaattaattggactcaagatagcttttttttttgtaacaatgatagcttaattggagtaatacatatgcgacataggtgtattggtacatgaaatatttttttgtaacaatgaaggcatgctgtagttgtggagccaaatcctgaagggggcctaaaaagtgatgcacataatatttcattctttaaatggaatgtctctaacatctttcaagacatgaagatgagactttcaaatgatgcaccttttcttttgaaatagtgcaaattgactgtatttttttcagaacttcttgagaagttattccattttaaaatgcacaacaccgtttctttcacaatactgcaatttcatttcaggtaggagcgatttctacagacctattaggggattcttaaaccaggtatcaaactcattgctgataaactcaataaaaaaggccatgtggaaaataagataatataactccaaaataaaagcaatcaaacataagtaacttactttgcaaatccaaagtccgcaatcttcaagagggaattttcattatttgcaactagaagaatgttctatttgaacagccacaaattcaggatagaaaacaaaacaaaatgtcaggaaattccgtttctttcatcaattctttgtcattaaatatgaagatataatggaaatatccactcaataacagtaaattaaataatttaacctgtggttttagatctcgatgaaccacgttgttttcacgcagcatctgcagaccagatgctgcataaagaagagaatgtgattttggctctggggagagataaagcaataaatagtgcaagacactgagggtctgagaaagtgcttgcctagctgctggatgaaatgcttagcaactgtttcagaaacccttttatgctgctgaaggtatgagtgtaagtcaccacctcgacagtactctaatacaagatatattttcccaccatcctaaaatcatcaaataacaaagagatacgcaaataatagttagatatgagagtgaagaaataattatgtccaacaatctccctagagggaagcttccctttcgtggaacacctagaaatattaatatcggaggcataattaaacatgttaggtatgcttttgaactctaaggagggaacaactaatggtatagtttcctaaattccaccagaaaatatatccaaaacaaacaagttaccaaatttggaattttaatgttttgcttccacagccagcgaacaaacatccaaagttaaacaacttacgctatggtactagcattaagttaaaactttgcatagtatcaccacccaaatgaacgtcaagcccaatgagttctcctttgcttgaggcatctgaataccaagaaagctcagaagaattcaactaaaagagagactataagaactcccgattttattcatccgaggtttataaacagtcgccgtccgcatgaaatcctaacaaatcgaacgcaattgcgcaaaatataaacagtagaagggcgttgatccgaggatcggggtaccctgatggactcgtggagggcgatgacgttgggatgacggatgcgccggaggatgtcgacctcggagaggaggctctcgcggagcttgctgctaagccgctccacggcgatctccttcaaggccacctccgtgccccgcgtgcggtgcttcccgagccagacccgcgcgtacgcccccgacccgatctgccgcaccagcacgtagtcccctaccctccgcacgccgcttcctccccctcccccgccgccgctccccgcggcgcggtcccccatcccctctggtcccgctgcctggagcgcagttcgccgcgaaggacgtgagctccgccgccgccgggagagatgccgccgcggccgcggggagaagcaaccgaattatctcgccgcgcggaacAGagagagaaaaggggaggagggccaggtctctactcgc
More
|
||||||||||
| CDS seq | atgggggaccgcgccgcggggagcggcggcgggggagggggaggaagcggcgtgcggagggtaggggactacgtgctggtgcggcagatcgggtcgggggcgtacgcgcgggtctggctcgggaagcaccgcacgcggggcacggaggtggccttgaaggagatcgccgtggagcggcttagcagcaagctccgcgagagcctcctctccgaggtcgacatcctccggcgcatccgtcatcccaacgtcatcgccctccacgagtccatcagggatggtgggaaaatatatcttgtattagagtactgtcgaggtggtgacttacactcataccttcagcagcataaaagggtttctgaaacagttgctaagcatttcatccagcagctagcatctggtctgcagatgctgcgtgaaaacaacgtggttcatcgagatctaaaaccacagaacattcttctagttgcaaataatgaaaattccctcttgaagattgcggactttggatttgcaaagtttttagaaccttcttctctggctgaaacactttgcggttcaccgctttacatggctccagaagtcatgcaagctcagaagtatgatgcaaaggcagatttgtggagtgttggtataattctatatcaacttgttaccggatctcctccttttaccggggatagtcaaatccagttgctgagaaatatactcaatacacgagaaatacgatttccatctgattgcgacttgagccatggctgcattgacttatgcagaaagttactgcgaatcaattcagtggaacgccttaccgttgaagagtttgtgaaccatccatttctcgctgaacatgctttggagagaaccttgagccggacaccatcggacataagagatggctttccattcattaatagcagtcctacgagaccttcaagccaaagttctcaggaagattgtatgccttttcctttggatgatgagtcaactggacaggatgaaggtcctgtttctgatagtaagagtgcaataaaatcctatgggtttgccacgagtaaaaggcttgataaaacttcaggtcagagtccaacgaaacattcaagtctggtctctaaatatattaggggaaataattacgcatctagtagtcaacgcctggaccatcctaggagaatcaaggaaaacaagggtgatgaagggcacaaccctaaaggtggttatccagaagattcccctatcattgattcattagagtttgtagatcaggaatatgtctttgtgcacccagagggatcctcctcttcgatgaatgactcccgacagcgcaccatgccatcaaaacttgacagttcttctctttcaccaccgaagttattaactgctgtgagtgcaccaaggccaatacatggcatggcaattaacagacagcaatctggtggaactggtagcttggacagtcactgctctccagtatctggtacttcacaaggatctgcagatctcaacgatgctatggatcaaccaccatctgattgtctgaccagggttagattattggagcagtatgcgtctaccatagcagaattggtgaaagaaaagattaaagatgccaagcacttagagggattctcgattcagctagttgttcttgcaacctggaagcaagcaatttacatctgcacttcttatgcatcttctgccacaagagagaatccttcccatgatgtcaccgcgaagggtttTggctcaaatgctccccatttgcttgcaaactctcaactgttatatgatacatgcatggagatagagagtcagtttttggttcaaatggaatatgctgaagaacttgccaacactataggacagacagttgatgctacagaaatgccagatgcgatagaaatcatatttcagaccgcgcttaacctgggaagacatggtggtgttgatgagatgatggggaaatcagcatctgccatggtgctgtactcgaaggcagtatccatgctgcgctttctcctgactgaggcaccgtcactcgccctgaaccccgctctgtccctaacaagagatgatcgacgccgcctgcgcacatacattgaagccgttaacgctaggctcgtcccgttgcaataccagcggcactga
More
|
||||||||||
| Protein seq | MGDRAAGSGGGGGGGSGVRRVGDYVLVRQIGSGAYARVWLGKHRTRGTEVALKEIAVERLSSKLRESLLSEVDILRRIRHPNVIALHESIRDGGKIYLVLEYCRGGDLHSYLQQHKRVSETVAKHFIQQLASGLQMLRENNVVHRDLKPQNILLVANNENSLLKIADFGFAKFLEPSSLAETLCGSPLYMAPEVMQAQKYDAKADLWSVGIILYQLVTGSPPFTGDSQIQLLRNILNTREIRFPSDCDLSHGCIDLCRKLLRINSVERLTVEEFVNHPFLAEHALERTLSRTPSDIRDGFPFINSSPTRPSSQSSQEDCMPFPLDDESTGQDEGPVSDSKSAIKSYGFATSKRLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLDHPRRIKENKGDEGHNPKGGYPEDSPIIDSLEFVDQEYVFVHPEGSSSSMNDSRQRTMPSKLDSSSLSPPKLLTAVSAPRPIHGMAINRQQSGGTGSLDSHCSPVSGTSQGSADLNDAMDQPPSDCLTRVRLLEQYASTIAELVKEKIKDAKHLEGFSIQLVVLATWKQAIYICTSYASSATRENPSHDVTAKGFGSNAPHLLANSQLLYDTCMEIESQFLVQMEYAEELANTIGQTVDATEMPDAIEIIFQTALNLGRHGGVDEMMGKSASAMVLYSKAVSMLRFLLTEAPSLALNPALSLTRDDRRRLRTYIEAVNARLVPLQYQRH |
||||||||||
| Function | Serine/threonine-protein kinase ATG1c [UniProtKB/Swiss-Prot:F4IRW0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012000 | OsLima_03g0012000.03 | Chr03 | 9248309 | 9254006 | - | NAM | ||
| CDS seq | atgctgcgtgaaaacaacgtggttcatcgagatctaaaaccacagaacattcttctagttgcaaataatgaaaattccctcttgaagattgcggactttggatttgcaaagtttttagaaccttcttctctggctgaaacactttgcggttcaccgctttacatggctccagaagtcatgcaagctcagaagtatgatgcaaaggcagatttgtggagtgttggtataattctatatcaacttgttaccggatctcctccttttaccggggatagtcaaatccagttgctgagaaatatactcaatacacgagaaatacgatttccatctgattgcgacttgagccatggctgcattgacttatgcagaaagttactgcgaatcaattcagtggaacgccttaccgttgaagagtttgtgaaccatccatttctcgctgaacatgctttggagagaaccttgagccggacaccatcggacataagagatggctttccattcattaatagcagtcctacgagaccttcaagccaaagttctcaggaagattgtatgccttttcctttggatgatgagtcaactggacaggatgaaggtcctgtttctgatagtaagagtgcaataaaatcctatgggtttgccacgagtaaaaggcttgataaaacttcaggtcagagtccaacgaaacattcaagtctggtctctaaatatattaggggaaataattacgcatctagtagtcaacgcctggaccatcctaggagaatcaaggaaaacaagggtgatgaagggcacaaccctaaaggtggttatccagaaggtattgcagtctgttgtgactatcacatgtttcattataattgtgaaaaagttcttactaaatttgttatttccttacttgtaaatgtagattcccctatcattgattcattagagtttgtagatcaggaatatgtctttgtgcacccagagggatcctcctcttcgatgaatgactcccgacagcgcaccatgccatcaaaacttgacagttcttctctttcaccaccgaagttattaactgctgtgagtgcaccaaggccaatacatggcatggcaattaacagacagcaatctggtggaactggtagcttggacagtcactgctctccagtatctggtacttcacaaggatctgcagatctcaacgatgctatggatcaaccaccatctgattgtctgaccagggttagattattggagcagtatgcgtctaccatagcagaattggtgaaagaaaagattaaagatgccaagcacttagagggattctcgattcagctagttgttcttgcaacctggaagcaagcaatttacatctgcacttcttatgcatcttctgccacaagagagaatccttcccatgatgtcaccgcgaagggtttTggctcaaatgctccccatttgcttgcaaactctcaactgttatatgatacatgcatggagatagagagtcagtttttggttcaaatggaatatgctgaagaacttgccaacactataggacagacagttgatgctacagaaatgccagatgcgatagaaatcatatttcagaccgcgcttaacctgggaagacatggtggtgttgatgagatgatggggaaatcagcatctgccatggtgctgtactcgaaggcagtatccatgctgcgctttctcctgactgaggcaccgtcactcgccctgaaccccgctctgtccctaacaagagatgatcgacgccgcctgcgcacatacattgaagccgttaacgctaggctcgtcccgttgcaataccagcggcactga
More
|
|||||||
| Protein seq | MLRENNVVHRDLKPQNILLVANNENSLLKIADFGFAKFLEPSSLAETLCGSPLYMAPEVMQAQKYDAKADLWSVGIILYQLVTGSPPFTGDSQIQLLRNILNTREIRFPSDCDLSHGCIDLCRKLLRINSVERLTVEEFVNHPFLAEHALERTLSRTPSDIRDGFPFINSSPTRPSSQSSQEDCMPFPLDDESTGQDEGPVSDSKSAIKSYGFATSKRLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLDHPRRIKENKGDEGHNPKGGYPEGIAVCCDYHMFHYNCEKVLTKFVISLLVNVDSPIIDSLEFVDQEYVFVHPEGSSSSMNDSRQRTMPSKLDSSSLSPPKLLTAVSAPRPIHGMAINRQQSGGTGSLDSHCSPVSGTSQGSADLNDAMDQPPSDCLTRVRLLEQYASTIAELVKEKIKDAKHLEGFSIQLVVLATWKQAIYICTSYASSATRENPSHDVTAKGFGSNAPHLLANSQLLYDTCMEIESQFLVQMEYAEELANTIGQTVDATEMPDAIEIIFQTALNLGRHGGVDEMMGKSASAMVLYSKAVSMLRFLLTEAPSLALNPALSLTRDDRRRLRTYIEAVNARLVPLQYQRH
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012000 | OsLima_03g0012000.01 | Chr03 | 9248309 | 9254006 | - | NAM | ||
| CDS seq | atgctgcgtgaaaacaacgtggttcatcgagatctaaaaccacagaacattcttctagttgcaaataatgaaaattccctcttgaagattgcggactttggatttgcaaagtttttagaaccttcttctctggctgaaacactttgcggttcaccgctttacatggctccagaagtcatgcaagctcagaagtatgatgcaaaggcagatttgtggagtgttggtataattctatatcaacttgttaccggatctcctccttttaccggggatagtcaaatccagttgctgagaaatatactcaatacacgagaaatacgatttccatctgattgcgacttgagccatggctgcattgacttatgcagaaagttactgcgaatcaattcagtggaacgccttaccgttgaagagtttgtgaaccatccatttctcgctgaacatgctttggagagaaccttgagccggacaccatcggacataagagatggctttccattcattaatagcagtcctacgagaccttcaagccaaagttctcaggaagattgtatgccttttcctttggatgatgagtcaactggacaggatgaaggtcctgtttctgatagtaagagtgcaataaaatcctatgggtttgccacgagtaaaaggcttgataaaacttcaggtcagagtccaacgaaacattcaagtctggtctctaaatatattaggggaaataattacgcatctagtagtcaacgcctggaccatcctaggagaatcaaggaaaacaagggtgatgaagggcacaaccctaaaggtggttatccagaagattcccctatcattgattcattagagtttgtagatcaggaatatgtctttgtgcacccagagggatcctcctcttcgatgaatgactcccgacagcgcaccatgccatcaaaacttgacagttcttctctttcaccaccgaagttattaactgctgtgagtgcaccaaggccaatacatggcatggcaattaacagacagcaatctggtggaactggtagcttggacagtcactgctctccagtatctggtacttcacaaggatctgcagatctcaacgatgctatggatcaaccaccatctgattgtctgaccagggttagattattggagcagtatgcgtctaccatagcagaattggtgaaagaaaagattaaagatgccaagcacttagagggattctcgattcagctagttgttcttgcaacctggaagcaagcaatttacatctgcacttcttatgcatcttctgccacaagagagaatccttcccatgatgtcaccgcgaagggtttTggctcaaatgctccccatttgcttgcaaactctcaactgttatatgatacatgcatggagatagagagtcagtttttggttcaaatggaatatgctgaagaacttgccaacactataggacagacagttgatgctacagaaatgccagatgcgatagaaatcatatttcagaccgcgcttaacctgggaagacatggtggtgttgatgagatgatggggaaatcagcatctgccatggtgctgtactcgaaggcagtatccatgctgcgctttctcctgactgaggcaccgtcactcgccctgaaccccgctctgtccctaacaagagatgatcgacgccgcctgcgcacatacattgaagccgttaacgctaggctcgtcccgttgcaataccagcggcactga
More
|
|||||||
| Protein seq | MLRENNVVHRDLKPQNILLVANNENSLLKIADFGFAKFLEPSSLAETLCGSPLYMAPEVMQAQKYDAKADLWSVGIILYQLVTGSPPFTGDSQIQLLRNILNTREIRFPSDCDLSHGCIDLCRKLLRINSVERLTVEEFVNHPFLAEHALERTLSRTPSDIRDGFPFINSSPTRPSSQSSQEDCMPFPLDDESTGQDEGPVSDSKSAIKSYGFATSKRLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLDHPRRIKENKGDEGHNPKGGYPEDSPIIDSLEFVDQEYVFVHPEGSSSSMNDSRQRTMPSKLDSSSLSPPKLLTAVSAPRPIHGMAINRQQSGGTGSLDSHCSPVSGTSQGSADLNDAMDQPPSDCLTRVRLLEQYASTIAELVKEKIKDAKHLEGFSIQLVVLATWKQAIYICTSYASSATRENPSHDVTAKGFGSNAPHLLANSQLLYDTCMEIESQFLVQMEYAEELANTIGQTVDATEMPDAIEIIFQTALNLGRHGGVDEMMGKSASAMVLYSKAVSMLRFLLTEAPSLALNPALSLTRDDRRRLRTYIEAVNARLVPLQYQRH
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012000 | OsLima_03g0012000.02 | Chr03 | 9248309 | 9254006 | - | NAM | ||
| CDS seq | atgggggaccgcgccgcggggagcggcggcgggggagggggaggaagcggcgtgcggagggtaggggactacgtgctggtgcggcagatcgggtcgggggcgtacgcgcgggtctggctcgggaagcaccgcacgcggggcacggaggtggccttgaaggagatcgccgtggagcggcttagcagcaagctccgcgagagcctcctctccgaggtcgacatcctccggcgcatccgtcatcccaacgtcatcgccctccacgagtccatcagggatggtgggaaaatatatcttgtattagagtactgtcgaggtggtgacttacactcataccttcagcagcataaaagggtttctgaaacagttgctaagcatttcatccagcagctagcatctggtctgcagatgctgcgtgaaaacaacgtggttcatcgagatctaaaaccacagaacattcttctagttgcaaataatgaaaattccctcttgaagattgcggactttggatttgcaaagtttttagaaccttcttctctggctgaaacactttgcggttcaccgctttacatggctccagaagtcatgcaagctcagaagtatgatgcaaaggcagatttgtggagtgttggtataattctatatcaacttgttaccggatctcctccttttaccggggatagtcaaatccagttgctgagaaatatactcaatacacgagaaatacgatttccatctgattgcgacttgagccatggctgcattgacttatgcagaaagttactgcgaatcaattcagtggaacgccttaccgttgaagagtttgtgaaccatccatttctcgctgaacatgctttggagagaaccttgagccggacaccatcggacataagagatggctttccattcattaatagcagtcctacgagaccttcaagccaaagttctcaggaagattgtatgccttttcctttggatgatgagtcaactggacaggatgaaggtcctgtttctgatagtaagagtgcaataaaatcctatgggtttgccacgagtaaaaggcttgataaaacttcaggtcagagtccaacgaaacattcaagtctggtctctaaatatattaggggaaataattacgcatctagtagtcaacgcctggaccatcctaggagaatcaaggaaaacaagggtgatgaagggcacaaccctaaaggtggttatccagaagattcccctatcattgattcattagagtttgtagatcaggaatatgtctttgtgcacccagagggatcctcctcttcgatgaatgactcccgacagcgcaccatgccatcaaaacttgacagttcttctctttcaccaccgaagttattaactgctgtgagtgcaccaaggccaatacatggcatggcaattaacagacagcaatctggtggaactggtagcttggacagtcactgctctccagtatctggtacttcacaaggatctgcagatctcaacgatgctatggatcaaccaccatctgattgtctgaccagggttagattattggagcagtatgcgtctaccatagcagaattggtgaaagaaaagattaaagatgccaagcacttagagggattctcgattcagctagttgttcttgcaacctggaagcaagcaatttacatctgcacttcttatgcatcttctgccacaagagagaatccttcccatgatgtcaccgcgaagggtttTggctcaaatgctccccatttgcttgcaaactctcaactgttatatgatacatgcatggagatagagagtcagtttttggttcaaatggaatatgctgaagaacttgccaacactataggacagacagttgatgctacagaaatgccagatgcgatagaaatcatatttcagaccgcgcttaacctgggaagacatggtggtgttgatgagatgatggggaaatcagcatctgccatggtgctgtactcgaaggcagtatccatgctgcgctttctcctgactgaggcaccgtcactcgccctgaaccccgctctgtccctaacaagagatgatcgacgccgcctgcgcacatacattgaagccgttaacgctaggctcgtcccgttgcaataccagcggcactga
More
|
|||||||
| Protein seq | MGDRAAGSGGGGGGGSGVRRVGDYVLVRQIGSGAYARVWLGKHRTRGTEVALKEIAVERLSSKLRESLLSEVDILRRIRHPNVIALHESIRDGGKIYLVLEYCRGGDLHSYLQQHKRVSETVAKHFIQQLASGLQMLRENNVVHRDLKPQNILLVANNENSLLKIADFGFAKFLEPSSLAETLCGSPLYMAPEVMQAQKYDAKADLWSVGIILYQLVTGSPPFTGDSQIQLLRNILNTREIRFPSDCDLSHGCIDLCRKLLRINSVERLTVEEFVNHPFLAEHALERTLSRTPSDIRDGFPFINSSPTRPSSQSSQEDCMPFPLDDESTGQDEGPVSDSKSAIKSYGFATSKRLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLDHPRRIKENKGDEGHNPKGGYPEDSPIIDSLEFVDQEYVFVHPEGSSSSMNDSRQRTMPSKLDSSSLSPPKLLTAVSAPRPIHGMAINRQQSGGTGSLDSHCSPVSGTSQGSADLNDAMDQPPSDCLTRVRLLEQYASTIAELVKEKIKDAKHLEGFSIQLVVLATWKQAIYICTSYASSATRENPSHDVTAKGFGSNAPHLLANSQLLYDTCMEIESQFLVQMEYAEELANTIGQTVDATEMPDAIEIIFQTALNLGRHGGVDEMMGKSASAMVLYSKAVSMLRFLLTEAPSLALNPALSLTRDDRRRLRTYIEAVNARLVPLQYQRH
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0012000 | OsLima_03g0012000.04 | Chr03 | 9248309 | 9254006 | - | NAM | ||
| CDS seq | atgctgcgtgaaaacaacgtggttcatcgagatctaaaaccacagaacattcttctagttgcaaataatgaaaattccctcttgaagattgcggactttggatttgcaaagtttttagaaccttcttctctggctgaaacactttgcggttcaccgctttacatggctccagaagtcatgcaagctcagaagtatgatgcaaaggcagatttgtggagtgttggtataattctatatcaacttgttaccggatctcctccttttaccggggatagtcaaatccagttgctgagaaatatactcaatacacgagaaatacgatttccatctgattgcgacttgagccatggctgcattgacttatgcagaaagttactgcgaatcaattcagtggaacgccttaccgttgaagagtttgtgaaccatccatttctcgctgaacatgctttggagagaaccttgagccggacaccatcggacataagagatggctttccattcattaatagcagtcctacgagaccttcaagccaaagttctcaggaagattgtatgccttttcctttggatgatgagtcaactggacaggatgaaggtcctgtttctgatagtaagagtgcaataaaatcctatgggtttgccacgagtaaaaggcttgataaaacttcaggtcagagtccaacgaaacattcaagtctggtctctaaatatattaggggaaataattacgcatctagtagtcaacgcctggaccatcctaggagaatcaaggaaaacaagggtgatgaagggcacaaccctaaaggtggttatccagaagagggatcctcctcttcgatgaatgactcccgacagcgcaccatgccatcaaaacttgacagttcttctctttcaccaccgaagttattaactgctgtgagtgcaccaaggccaatacatggcatggcaattaacagacagcaatctggtggaactggtagcttggacagtcactgctctccagtatctggtacttcacaaggatctgcagatctcaacgatgctatggatcaaccaccatctgattgtctgaccagggttagattattggagcagtatgcgtctaccatagcagaattggtgaaagaaaagattaaagatgccaagcacttagagggattctcgattcagctagttgttcttgcaacctggaagcaagcaatttacatctgcacttcttatgcatcttctgccacaagagagaatccttcccatgatgtcaccgcgaagggtttTggctcaaatgctccccatttgcttgcaaactctcaactgttatatgatacatgcatggagatagagagtcagtttttggttcaaatggaatatgctgaagaacttgccaacactataggacagacagttgatgctacagaaatgccagatgcgatagaaatcatatttcagaccgcgcttaacctgggaagacatggtggtgttgatgagatgatggggaaatcagcatctgccatggtgctgtactcgaaggcagtatccatgctgcgctttctcctgactgaggcaccgtcactcgccctgaaccccgctctgtccctaacaagagatgatcgacgccgcctgcgcacatacattgaagccgttaacgctaggctcgtcccgttgcaataccagcggcactga
More
|
|||||||
| Protein seq | MLRENNVVHRDLKPQNILLVANNENSLLKIADFGFAKFLEPSSLAETLCGSPLYMAPEVMQAQKYDAKADLWSVGIILYQLVTGSPPFTGDSQIQLLRNILNTREIRFPSDCDLSHGCIDLCRKLLRINSVERLTVEEFVNHPFLAEHALERTLSRTPSDIRDGFPFINSSPTRPSSQSSQEDCMPFPLDDESTGQDEGPVSDSKSAIKSYGFATSKRLDKTSGQSPTKHSSLVSKYIRGNNYASSSQRLDHPRRIKENKGDEGHNPKGGYPEEGSSSSMNDSRQRTMPSKLDSSSLSPPKLLTAVSAPRPIHGMAINRQQSGGTGSLDSHCSPVSGTSQGSADLNDAMDQPPSDCLTRVRLLEQYASTIAELVKEKIKDAKHLEGFSIQLVVLATWKQAIYICTSYASSATRENPSHDVTAKGFGSNAPHLLANSQLLYDTCMEIESQFLVQMEYAEELANTIGQTVDATEMPDAIEIIFQTALNLGRHGGVDEMMGKSASAMVLYSKAVSMLRFLLTEAPSLALNPALSLTRDDRRRLRTYIEAVNARLVPLQYQRH
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr03 | 9249895 | 9250046 | - | OsLima_03g0012000.01,OsLima_03g0012000.02 | OsLima_03g0012000.04,OsLima_03g0012000.02,OsLima_03g0012000.01 | All |
| RI | Chr03 | 9252740 | 9253005 | - | OsLima_03g0012000.01,OsLima_03g0012000.03,OsLima_03g0012000.04 | OsLima_03g0012000.04,OsLima_03g0012000.02,OsLima_03g0012000.01,OsLima_03g0012000.03 | All |
| RI | Chr03 | 9249585 | 9250401 | - | OsLima_03g0012000.03 | OsLima_03g0012000.04,OsLima_03g0012000.03 | All |
| RI | Chr03 | 9249585 | 9250401 | - | OsLima_03g0012000.03 | OsLima_03g0012000.02,OsLima_03g0012000.01,OsLima_03g0012000.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.261515 | 0.624153 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0268200 | RBH | 3.652031 | 4.060156 | 5.881833 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g16130 | RBH | 2.174979 | 2.490546 | 1.070708 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0268200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0012290 | RBH | 1.312855 | 10.617090 | 5.305607 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0012120 | RBH | 0.699625 | 1.993806 | 3.778103 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0012140 | RBH | 2.085708 | 14.880373 | 16.177038 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0012090 | RBH | 0.329018 | 0.310771 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0011970 | RBH | 18.985847 | 15.763647 | 24.207533 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0150500 | SBH | 5.701326 | 9.915945 | 19.667619 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0011870 | RBH | 0.747978 | 0.847712 | 1.780425 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0151900 | RBH | 9.156393 | 20.3673005 | 17.455739 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0012070 | RBH | 1.123295 | 10.229775 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0012070 | RBH | 15.549485 | 19.647030 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0012010 | RBH | 0.960152 | 0.785262 | 1.225480 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0011950 | RBH | 0.673819 | 4.486032 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011920 | RBH | 1.193185 | 2.947640 | 4.054344 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0011790 | RBH | 3.831303 | 27.378895 | 10.520609 |
