Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0011100 | OGI:03022200 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:8533692-8536966 | ||||||||
| Gene Symbol | GATA22, OsGATA22, - | ||||||||||
| DNA seq | atgggggagggttcggagaggcctcgctcctcccgcgccgcgcgtgcgcgaaaccctagctttgaggtggaggtggtggtggaggaggaggaggatgaggaggaagcggctgtggctgcggctaggcgtgtcaagagggaggtcgcggatgacctgaacggggagcccgcggaggaggaggatgacgacgaggaggaggtggtggtggaggaggacgaggaggtggttgtcgcctccgacgaggagggcggcgacggggaggcggacggcggcggcgaagtggctgtggccttcgagccgcgcacgctggaggaggccctcgttccgcgcgtgggtgcggtgttcgactctgtggacgaggccttctcgctctacaagacctacgcctaccgcacaggcttccacgcggtgcgccggacctgccacaactacgaggggctccgctaccgctctacctttacctgcactcatggtggcaaggcccgggctgacgccagcccgtctgatggctcaggcgcccgctacccactccgcagcagcaagcgtgcggccaacgcccaggagaagagggctcgtcgcggtgcggctgagaagacaggatgcaaggcgatgttgatcatccgtgacaggcgggcagatgataagtggaaggtggagttcgttgagttggagcataaccatccgtgtacacctgacatggtgaggttcttgaaggcttacagggaaatgcctgactcagctaagaagaaggccaagatttctgatgagatggatgatagggTggagaaatcgctgagcgagattgctgagaccaggaagttcccaactcggcccaagcggagtgttggtggtggagcctctgttggtgggttcaggtttagtagaagcgacagttttgtgcagcggtttggggatgatgaccttattgcactgaagaagtttattgaggcgatgcagcgcaagaagccaaactttatccactactgggatcttgatcaggaaacccatgtgaagaattttttctggactgactcgaggtcccaggcacaataccgttattttggtgacgtcattacacttgacgtgatgtatttacagcattcacgtgctagccttccattggccacaatccttggggtgaacaaccatggtcaccttgttctgcttggttgtggtctgctttgcagtgacaagaaggaaaactatgtttggctgttgaagaggtggttgggctgtatgaatggcaagccaccagaggcgatcacaaccacctattcagatgccgttgcagaagctgtggctgaggtgttgccaaatgcgaggcaccgtttctgtttttggcatatcttgaaaaaactccaagagaatgtcggacgcacaaatgagaaagaggcaatttccttgagattcaaggaggttgtttatgacacagtcacacttacagactttgagagagagtggggggccatggttgagcagtacaagctcaaagacaatgactggttctctgctttgtacagctgccggaaacaatgggcacctggttatgtcaaccattcattttgggctggcacttctgctattaggaaggtcgagaaaccagatccatactttgatggcgtggtgacaactaaaactaccctaccagttttccttgagcaatacgagactactctgagagggaagctggaaagggaggcatatgatgatttgcgctcctattactctaggctcacttcgctgtcgggattaccctttgaggaacaactcatggagctctacacagtacctatgttccaagcattccaagacgagatcaaacaattaatacacgtgatttgtaaagaggtagacaggagtggaaattcaattacctacatggctagtgagttgatacagggaaagaaggtcgactatacagttgtctacaacagtgctgacaaggatgtctggtgcatttgtcgctcctttccgtcacgaggcatcctttgcagccatgctctctccgttcttaagcaagagaatgtgttaatgctgccatcaaagtatatcctcaatcgttggagaaaggattttagagtacttcatgcaactgcaagttccagttctatatcatctgatagagatttgagcattttcaatgatctctatgtccgtggccacgagtatttagaagatgtcattgacattggagccagagaacctgagctcaaagagtttgtgttgacagttatgaaggaagcgaaggacaaactagttaggcctgaccatattcatcaagctgatcagcgggttgatgtaaatatgtcagtgactggccaagtgtccgcagatagaggagtagatgtgaacatttcatcaaatagcacatccctgattcagggagacagaagggttgatacaaatgtgacctcaaacaccacagccatggttcatggtcatggggattccatgacatcaaacaccacagctatgattcatggggatagaagagttgagatgaagatcccaacgccccaccttattcatggagacggaataattgacatgaacatggcatcccctcacttgatgcagagggacagaagagttgacatgaacatggcctccccacacatgatacagggggacagaagagttgatatgaacttggcatcaccacactttatacaaagcgacagaagggttgatatgaacctggcatcttcgcatctgatacaaggggacagaagagttgatatgaatatgacatcccctcacttgatacaaggtgacaccagagtggatatgaatatggtatctactgctcagaatggaatgcactcTtttgatttggtgaatgtgaacctagaaagtggtcctttgccaatggctgcaactgatttcatgcaaatgcatcagcacccacccgtttaccatccaaaacaactcctcaatatgagagatcaggtgatggacacaaataagaggcccaatatggaaacaaacacatactttatgggaggtggaatgcatgtgggatagtttcttgtctagagacccactatgtaatcttttctgtttggaaaggagatgcctttccttattttatattgatatgtatgttcctacagcaggcagcaactaatcaattaggttgtagtaattgcagattaatcttgcagtgctggtagcTttgttgttgtatccttctctgttcggcagttgtagcaataacttgctattgtcttgtacataagatagtagaatgcaacaaccttttcttgtcacccggt
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| CDS seq | atgggggagggttcggagaggcctcgctcctcccgcgccgcgcgtgcgcgaaaccctagctttgaggtggaggtggtggtggaggaggaggaggatgaggaggaagcggctgtggctgcggctaggcgtgtcaagagggaggtcgcggatgacctgaacggggagcccgcggaggaggaggatgacgacgaggaggaggtggtggtggaggaggacgaggaggtggttgtcgcctccgacgaggagggcggcgacggggaggcggacggcggcggcgaagtggctgtggccttcgagccgcgcacgctggaggaggccctcgttccgcgcgtgggtgcggtgttcgactctgtggacgaggccttctcgctctacaagacctacgcctaccgcacaggcttccacgcggtgcgccggacctgccacaactacgaggggctccgctaccgctctacctttacctgcactcatggtggcaaggcccgggctgacgccagcccgtctgatggctcaggcgcccgctacccactccgcagcagcaagcgtgcggccaacgcccaggagaagagggctcgtcgcggtgcggctgagaagacaggatgcaaggcgatgttgatcatccgtgacaggcgggcagatgataagtggaaggtggagttcgttgagttggagcataaccatccgtgtacacctgacatggtgaggttcttgaaggcttacagggaaatgcctgactcagctaagaagaaggccaagatttctgatgagatggatgatagggTggagaaatcgctgagcgagattgctgagaccaggaagttcccaactcggcccaagcggagtgttggtggtggagcctctgttggtgggttcagctgccggaaacaatgggcacctggttatgtcaaccattcattttgggctggcacttctgctattaggaaggtcgagaaaccagatccatactttgatggcgtggtgacaactaaaactaccctaccagttttccttgagcaatacgagactactctgagagggaagctggaaagggaggcatatgatgatttgcgctcctattactctaggctcacttcgctgtcgggattaccctttgaggaacaactcatggagctctacacagtacctatgttccaagcattccaagacgagatcaaacaattaatacacgtgatttgtaaagaggtagacaggagtggaaattcaattacctacatggctagtgagttgatacagggaaagaaggtcgactatacagttgtctacaacagtgctgacaaggatgtctggtgcatttgtcgctcctttccgtcacgaggcatcctttgcagccatgctctctccgttcttaagcaagagaatgtgttaatgctgccatcaaagtatatcctcaatcgttggagaaaggattttagagtacttcatgcaactgcaagttccagttctatatcatctgatagagatttgagcattttcaatgatctctatgtccgtggccacgagtatttagaagatgtcattgacattggagccagagaacctgagctcaaagagtttgtgttgacagttatgaaggaagcgaaggacaaactagttaggcctgaccatattcatcaagctgatcagcgggttgatgtaaatatgtcagtgactggccaagtgtccgcagatagaggagtagatgtgaacatttcatcaaatagcacatccctgattcagggagacagaagggttgatacaaatgtgacctcaaacaccacagccatggttcatggtcatggggattccatgacatcaaacaccacagctatgattcatggggatagaagagttgagatgaagatcccaacgccccaccttattcatggagacggaataattgacatgaacatggcatcccctcacttgatgcagagggacagaagagttgacatgaacatggcctccccacacatgatacagggggacagaagagttgatatgaacttggcatcaccacactttatacaaagcgacagaagggttgatatgaacctggcatcttcgcatctgatacaaggggacagaagagttgatatgaatatgacatcccctcacttgatacaaggtgacaccagagtggatatgaatatggtatctactgctcagaatggaatgcactcTtttgatttggtgaatgtgaacctagaaagtggtcctttgccaatggctgcaactgatttcatgcaaatgcatcagcacccacccgtttaccatccaaaacaactcctcaatatgagagatcaggtgatggacacaaataagaggcccaatatggaaacaaacacatactttatgggaggtggaatgcatgtgggatag
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| Protein seq | MGEGSERPRSSRAARARNPSFEVEVVVEEEEDEEEAAVAAARRVKREVADDLNGEPAEEEDDDEEEVVVEEDEEVVVASDEEGGDGEADGGGEVAVAFEPRTLEEALVPRVGAVFDSVDEAFSLYKTYAYRTGFHAVRRTCHNYEGLRYRSTFTCTHGGKARADASPSDGSGARYPLRSSKRAANAQEKRARRGAAEKTGCKAMLIIRDRRADDKWKVEFVELEHNHPCTPDMVRFLKAYREMPDSAKKKAKISDEMDDRVEKSLSEIAETRKFPTRPKRSVGGGASVGGFSCRKQWAPGYVNHSFWAGTSAIRKVEKPDPYFDGVVTTKTTLPVFLEQYETTLRGKLEREAYDDLRSYYSRLTSLSGLPFEEQLMELYTVPMFQAFQDEIKQLIHVICKEVDRSGNSITYMASELIQGKKVDYTVVYNSADKDVWCICRSFPSRGILCSHALSVLKQENVLMLPSKYILNRWRKDFRVLHATASSSSISSDRDLSIFNDLYVRGHEYLEDVIDIGAREPELKEFVLTVMKEAKDKLVRPDHIHQADQRVDVNMSVTGQVSADRGVDVNISSNSTSLIQGDRRVDTNVTSNTTAMVHGHGDSMTSNTTAMIHGDRRVEMKIPTPHLIHGDGIIDMNMASPHLMQRDRRVDMNMASPHMIQGDRRVDMNLASPHFIQSDRRVDMNLASSHLIQGDRRVDMNMTSPHLIQGDTRVDMNMVSTAQNGMHSFDLVNVNLESGPLPMAATDFMQMHQHPPVYHPKQLLNMRDQVMDTNKRPNMETNTYFMGGGMHVG |
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| Function | Protein FAR1-RELATED SEQUENCE 6 [UniProtKB/Swiss-Prot:Q9SSQ4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0011100 | OsLima_03g0011100.01 | Chr03 | 8533692 | 8536966 | + | NAM | ||
| CDS seq | atgggggagggttcggagaggcctcgctcctcccgcgccgcgcgtgcgcgaaaccctagctttgaggtggaggtggtggtggaggaggaggaggatgaggaggaagcggctgtggctgcggctaggcgtgtcaagagggaggtcgcggatgacctgaacggggagcccgcggaggaggaggatgacgacgaggaggaggtggtggtggaggaggacgaggaggtggttgtcgcctccgacgaggagggcggcgacggggaggcggacggcggcggcgaagtggctgtggccttcgagccgcgcacgctggaggaggccctcgttccgcgcgtgggtgcggtgttcgactctgtggacgaggccttctcgctctacaagacctacgcctaccgcacaggcttccacgcggtgcgccggacctgccacaactacgaggggctccgctaccgctctacctttacctgcactcatggtggcaaggcccgggctgacgccagcccgtctgatggctcaggcgcccgctacccactccgcagcagcaagcgtgcggccaacgcccaggagaagagggctcgtcgcggtgcggctgagaagacaggatgcaaggcgatgttgatcatccgtgacaggcgggcagatgataagtggaaggtggagttcgttgagttggagcataaccatccgtgtacacctgacatggtgaggttcttgaaggcttacagggaaatgcctgactcagctaagaagaaggccaagatttctgatgagatggatgatagggTggagaaatcgctgagcgagattgctgagaccaggaagttcccaactcggcccaagcggagtgttggtggtggagcctctgttggtgggttcagctgccggaaacaatgggcacctggttatgtcaaccattcattttgggctggcacttctgctattaggaaggtcgagaaaccagatccatactttgatggcgtggtgacaactaaaactaccctaccagttttccttgagcaatacgagactactctgagagggaagctggaaagggaggcatatgatgatttgcgctcctattactctaggctcacttcgctgtcgggattaccctttgaggaacaactcatggagctctacacagtacctatgttccaagcattccaagacgagatcaaacaattaatacacgtgatttgtaaagaggtagacaggagtggaaattcaattacctacatggctagtgagttgatacagggaaagaaggtcgactatacagttgtctacaacagtgctgacaaggatgtctggtgcatttgtcgctcctttccgtcacgaggcatcctttgcagccatgctctctccgttcttaagcaagagaatgtgttaatgctgccatcaaagtatatcctcaatcgttggagaaaggattttagagtacttcatgcaactgcaagttccagttctatatcatctgatagagatttgagcattttcaatgatctctatgtccgtggccacgagtatttagaagatgtcattgacattggagccagagaacctgagctcaaagagtttgtgttgacagttatgaaggaagcgaaggacaaactagttaggcctgaccatattcatcaagctgatcagcgggttgatgtaaatatgtcagtgactggccaagtgtccgcagatagaggagtagatgtgaacatttcatcaaatagcacatccctgattcagggagacagaagggttgatacaaatgtgacctcaaacaccacagccatggttcatggtcatggggattccatgacatcaaacaccacagctatgattcatggggatagaagagttgagatgaagatcccaacgccccaccttattcatggagacggaataattgacatgaacatggcatcccctcacttgatgcagagggacagaagagttgacatgaacatggcctccccacacatgatacagggggacagaagagttgatatgaacttggcatcaccacactttatacaaagcgacagaagggttgatatgaacctggcatcttcgcatctgatacaaggggacagaagagttgatatgaatatgacatcccctcacttgatacaaggtgacaccagagtggatatgaatatggtatctactgctcagaatggaatgcactcTtttgatttggtgaatgtgaacctagaaagtggtcctttgccaatggctgcaactgatttcatgcaaatgcatcagcacccacccgtttaccatccaaaacaactcctcaatatgagagatcaggtgatggacacaaataagaggcccaatatggaaacaaacacatactttatgggaggtggaatgcatgtgggatag
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| Protein seq | MGEGSERPRSSRAARARNPSFEVEVVVEEEEDEEEAAVAAARRVKREVADDLNGEPAEEEDDDEEEVVVEEDEEVVVASDEEGGDGEADGGGEVAVAFEPRTLEEALVPRVGAVFDSVDEAFSLYKTYAYRTGFHAVRRTCHNYEGLRYRSTFTCTHGGKARADASPSDGSGARYPLRSSKRAANAQEKRARRGAAEKTGCKAMLIIRDRRADDKWKVEFVELEHNHPCTPDMVRFLKAYREMPDSAKKKAKISDEMDDRVEKSLSEIAETRKFPTRPKRSVGGGASVGGFSCRKQWAPGYVNHSFWAGTSAIRKVEKPDPYFDGVVTTKTTLPVFLEQYETTLRGKLEREAYDDLRSYYSRLTSLSGLPFEEQLMELYTVPMFQAFQDEIKQLIHVICKEVDRSGNSITYMASELIQGKKVDYTVVYNSADKDVWCICRSFPSRGILCSHALSVLKQENVLMLPSKYILNRWRKDFRVLHATASSSSISSDRDLSIFNDLYVRGHEYLEDVIDIGAREPELKEFVLTVMKEAKDKLVRPDHIHQADQRVDVNMSVTGQVSADRGVDVNISSNSTSLIQGDRRVDTNVTSNTTAMVHGHGDSMTSNTTAMIHGDRRVEMKIPTPHLIHGDGIIDMNMASPHLMQRDRRVDMNMASPHMIQGDRRVDMNLASPHFIQSDRRVDMNLASSHLIQGDRRVDMNMTSPHLIQGDTRVDMNMVSTAQNGMHSFDLVNVNLESGPLPMAATDFMQMHQHPPVYHPKQLLNMRDQVMDTNKRPNMETNTYFMGGGMHVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.600309 | 0.167845 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0255000 | RBH | 3.332937 | 2.704005 | 6.448762 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g15010 | RBH | 2.244837 | 1.791750 | 1.621986 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0255000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0011370 | RBH | 0.939774 | 9.366602 | 6.925453 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0011210 | RBH | 0.466272 | 3.167680 | 2.300830 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0011230 | RBH | 2.450686 | 4.062182 | 10.586390 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0011190 | RBH | 0.487191 | 0.145784 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0011060 | RBH | 20.003649 | 13.831558 | 31.208485 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0138900 | RBH | 7.8064445 | 26.997114 | 46.334169 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0010950 | RBH | 0.753618 | 0.426699 | 1.898163 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0139400 | RBH | 10.158635 | 31.7793865 | 22.183712 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0011180 | RBH | 0.909900 | 10.064088 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0011150 | RBH | 11.719020 | 14.357782 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0011130 | RBH | 1.925406 | 0.774064 | 2.528367 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0011060 | RBH | 0.666507 | 8.575606 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G011050 | RBH | 2.252840 | 3.288694 | 5.838352 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0010920 | RBH | 3.987265 | 13.868951 | 7.863033 |
