Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0009590 | OGI:03018550 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:7182638-7185021 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | taccgagatcaaagagccccagccttagcgtgcatctttcggcttcatcaacatccttcactgttacagtaaagaccccgacaatcaaccatagttagaggggtaccaaactaacttatctaaaaaaaatcatatcatttctagtcacccataaattgcctacttacagcagccaaaattattgctattatttatttgcacggatcagtaatgacatatggacatcaccatcctagtggcacaggaattgtaaattcaaaattattcagaaaagagaagattttctctttcctgtgtacctctatgctgctaactgccttctgtatttcagcaactactttcttgagagcaagatcgctgaagaagccaacgtgactaacacctggcaacctgaccaccttcaagatttggccttccaccccagaccactccttctccgcagccatcaggctcacaatgttcatgttcccgtcgccgtcgccgtacaccacctccggtgtcccctcgaacccagcttcgccgtagacgaacgtctccggcgtcctgacaccgaccccgtacatgcttgtcaccggcaccatcggcgccgggagcgcccgccacatcggcagcacccgtgtcacgtacggctggaccccttccgtgaagccgatggcgtcgaggaactcggtgatgttgttggcggagtaggtcgagttcttggtcaccaccaccggccggtcaccgaacaccatcggcgtcggcaggcgccagagcgcgctctgctggctccgcgcaagcctggtcctcgccggcggcgcgaggttggggaggccggagccggcgccggaggcgaggccgtccatcccctccgcgaagccgccgagcgcggcggccaggaggacggcgtgcttgacgaagcgttggcgccaggcgagcgggcgggcgcgcaggaactggtacgtgagcgcgcagccgaagctgtgcgccaccacgacggcaggccgcccgccgttgagccggctcgccctctcgatgaggcgcgtgaggcgagcgaagtagcgctcgcccaccgccgacgggtggccccgcggcgccaccgcgtagcggaagtcgtagggcgcggcgaagaggttcccgccgtcgcggtggcccatcgcctccagctgccgcaccagtgggtcccacctgccagtcagacaagaataaataaatagtaaataaatttggaagtagctagtgagttgtcgacagtttttgagactcaaaactttcaaatttttcaaccataggatctgttgaaacgggtccacacaagtacaaaccactaatcttacgccaaggttgattcaacggtaagaatttggtcaacatatataagggaaaaataattcaaaagtaatacgcatgatcttaaaaaaattgcaaatcctaattttatacaatgtaattaccctataactatcatataactactatataactgagatataagtgctatgtaactactatgtaactaggatgtaagtgctatgtaactactatgtaactagagtgtaagtgctatgtaagtagattaaaacacgtgaatacgtataggacgttcgacagaaacgaggtaccaaacattcaaacttttttagcctttgcatccaacagcgacgtcattgctagcaagcccgtaagagagtgaaatataacaagattatccaaaaattagatgaaaacaggggactaattgtgtagttaattaaagcgtaagtaaaatgtaaccaaaatgtaatttcagattcaacgtatacttgagctagcttagtggttgttatgctgtcctatttaaagggagggcctgggttcgactcctgtcgcaagttttctagcaattccgataaattttggctgcccatctatctaggagtatctacctggggatgcacgggcattgatacacgtgcgtacgattgttagtacgacgtaagacatactctgacacagtgacagcgtgacacagtgatactcacccaaccaaggcgcgggtggaggcgaaggaggggaccctggtgacgacgccggcgacgttgcggtagtcgtcggcgacggggtcgtagacgaggctcatcttctcggcgaggcagggggcctgggcgggttcgctcgccgccgcgtcgatcggccacaactggaaccactcatccttcccctctcgcgcgccgcagcgaggcgccgccggctcgtacgccgcagtcagccgcgcgtagagccggttggacccgtaccccggcacgagcacgaccgggtgcagatcgctgccgccgccgccggagcggccacgcgacggcagcgacaggagcacggctaccacggcgactcgccggaggagatccatgtgtgggtgcgtttgttgc
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| CDS seq | atggatctcctccggcgagtcgccgtggtagccgtgctcctgtcgctgccgtcgcgtggccgctccggcggcggcggcagcgatctgcacccggtcgtgctcgtgccggggtacgggtccaaccggctctacgcgcggctgactgcggcgtacgagccggcggcgcctcgctgcggcgcgcgagaggggaaggatgagtggttccagttgtggccgatcgacgcggcggcgagcgaacccgcccaggccccctgcctcgccgagaagatgagcctcgtctacgaccccgtcgccgacgactaccgcaacgtcgccggcgtcgtcaccagggtcccctccttcgcctccacccgcgccttgctggaggcgatgggccaccgcgacggcgggaacctcttcgccgcgccctacgacttccgctacgcggtggcgccgcggggccacccgtcggcggtgggcgagcgctacttcgctcgcctcacgcgcctcatcgagagggcgagccggctcaacggcgggcggcctgccgtcgtggtggcgcacagcttcggctgcgcgctcacgtaccagttcctgcgcgcccgcccgctcgcctggcgccaacgcttcgtcaagcacgccgtcctcctggccgccgcgctcggcggcttcgcggaggggatggacggcctcgcctccggcgccggctccggcctccccaacctcgcgccgccggcgaggaccaggcttgcgcggagccagcagagcgcgctctggcgcctgccgacgccgatggtgttcggtgaccggccggtggtggtgaccaagaactcgacctactccgccaacaacatcaccgagttcctcgacgccatcggcttcacggaaggggtccagccgtacgtgacacgggtgctgccgatgtggcgggcgctcccggcgccgatggtgccggtgacaagcatgtacggggtcggtgtcaggacgccggagacgttcgtctacggcgaagctgggttcgaggggacaccggaggtggtgtacggcgacggcgacgggaacatgaacattgtgagcctgatggctgcggagaaggagtggtctggggtggaaggccaaatcttgaaggtggtcaggttgccaggtgttagtcacgttggcttcttcagcgatcttgctctcaagaaagtagttgctgaaatacagaaggcagttagcagcatagaggtacacaggaaagagaaaatcttctcttttctgaataattttgaatttacaattcctgtgccactaggatggtga
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| Protein seq | MDLLRRVAVVAVLLSLPSRGRSGGGGSDLHPVVLVPGYGSNRLYARLTAAYEPAAPRCGAREGKDEWFQLWPIDAAASEPAQAPCLAEKMSLVYDPVADDYRNVAGVVTRVPSFASTRALLEAMGHRDGGNLFAAPYDFRYAVAPRGHPSAVGERYFARLTRLIERASRLNGGRPAVVVAHSFGCALTYQFLRARPLAWRQRFVKHAVLLAAALGGFAEGMDGLASGAGSGLPNLAPPARTRLARSQQSALWRLPTPMVFGDRPVVVTKNSTYSANNITEFLDAIGFTEGVQPYVTRVLPMWRALPAPMVPVTSMYGVGVRTPETFVYGEAGFEGTPEVVYGDGDGNMNIVSLMAAEKEWSGVEGQILKVVRLPGVSHVGFFSDLALKKVVAEIQKAVSSIEVHRKEKIFSFLNNFEFTIPVPLGW |
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| Function | Lecithin-cholesterol acyltransferase-like 1 [UniProtKB/Swiss-Prot:Q10PI6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0009590 | OsLima_03g0009590.01 | Chr03 | 7182638 | 7185021 | - | NAM | ||
| CDS seq | atggatctcctccggcgagtcgccgtggtagccgtgctcctgtcgctgccgtcgcgtggccgctccggcggcggcggcagcgatctgcacccggtcgtgctcgtgccggggtacgggtccaaccggctctacgcgcggctgactgcggcgtacgagccggcggcgcctcgctgcggcgcgcgagaggggaaggatgagtggttccagttgtggccgatcgacgcggcggcgagcgaacccgcccaggccccctgcctcgccgagaagatgagcctcgtctacgaccccgtcgccgacgactaccgcaacgtcgccggcgtcgtcaccagggtcccctccttcgcctccacccgcgccttgctggaggcgatgggccaccgcgacggcgggaacctcttcgccgcgccctacgacttccgctacgcggtggcgccgcggggccacccgtcggcggtgggcgagcgctacttcgctcgcctcacgcgcctcatcgagagggcgagccggctcaacggcgggcggcctgccgtcgtggtggcgcacagcttcggctgcgcgctcacgtaccagttcctgcgcgcccgcccgctcgcctggcgccaacgcttcgtcaagcacgccgtcctcctggccgccgcgctcggcggcttcgcggaggggatggacggcctcgcctccggcgccggctccggcctccccaacctcgcgccgccggcgaggaccaggcttgcgcggagccagcagagcgcgctctggcgcctgccgacgccgatggtgttcggtgaccggccggtggtggtgaccaagaactcgacctactccgccaacaacatcaccgagttcctcgacgccatcggcttcacggaaggggtccagccgtacgtgacacgggtgctgccgatgtggcgggcgctcccggcgccgatggtgccggtgacaagcatgtacggggtcggtgtcaggacgccggagacgttcgtctacggcgaagctgggttcgaggggacaccggaggtggtgtacggcgacggcgacgggaacatgaacattgtgagcctgatggctgcggagaaggagtggtctggggtggaaggccaaatcttgaaggtggtcaggttgccaggtgttagtcacgttggcttcttcagcgatcttgctctcaagaaagtagttgctgaaatacagaaggcagttagcagcatagaggtacacaggaaagagaaaatcttctcttttctgaataattttgaatttacaattcctgtgccactaggatggtga
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| Protein seq | MDLLRRVAVVAVLLSLPSRGRSGGGGSDLHPVVLVPGYGSNRLYARLTAAYEPAAPRCGAREGKDEWFQLWPIDAAASEPAQAPCLAEKMSLVYDPVADDYRNVAGVVTRVPSFASTRALLEAMGHRDGGNLFAAPYDFRYAVAPRGHPSAVGERYFARLTRLIERASRLNGGRPAVVVAHSFGCALTYQFLRARPLAWRQRFVKHAVLLAAALGGFAEGMDGLASGAGSGLPNLAPPARTRLARSQQSALWRLPTPMVFGDRPVVVTKNSTYSANNITEFLDAIGFTEGVQPYVTRVLPMWRALPAPMVPVTSMYGVGVRTPETFVYGEAGFEGTPEVVYGDGDGNMNIVSLMAAEKEWSGVEGQILKVVRLPGVSHVGFFSDLALKKVVAEIQKAVSSIEVHRKEKIFSFLNNFEFTIPVPLGW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0009590 | OsLima_03g0009590.02 | Chr03 | 7182804 | 7185020 | - | IsoSeq | ||
| CDS seq | acaaacgcacccacacatggatctcctccggcgagtcgccgtggtagccgtgctcctgtcgctgccgtcgcgtggccgctccggcggcggcggcagcgatctgcacccggtcgtgctcgtgccggggtacgggtccaaccggctctacgcgcggctgactgcggcgtacgagccggcggcgcctcgctgcggcgcgcgagaggggaa
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| Protein seq | TNAPTHGSPPASRRGSRAPVAAVAWPLRRRRQRSAPGRARAGVRVQPALRAADCGVRAGGASLRRARGE |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.428326 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0232800 | RBH | 1.254667 | 1.188726 | 2.481641 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g13030 | RBH | 0.831095 | 0.799518 | 0.574261 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0232800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0009860 | RBH | 0.249803 | 0.0 | 2.909107 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0009710 | RBH | 0.547353 | 0.704697 | 0.629273 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0009760 | RBH | 0.553775 | 0.0 | 1.305913 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0009690 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0009580 | RBH | 3.474923 | 2.136815 | 2.099180 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0116300 | SBH | 4.660826 | 2.2361975 | 2.360893 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0009490 | RBH | 0.063488 | 0.0 | 0.161739 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0116200 | RBH | 1.913586 | 2.6844035 | 10.3863995 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0009670 | RBH | 0.581957 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0009590 | RBH | 5.098987 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0009660 | RBH | 0.120949 | 0.0 | 0.675165 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0009610 | RBH | 0.232157 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G009590 | RBH | 0.0 | 0.0 | 0.930415 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0009510 | RBH | 0.684647 | 0.0 | 1.539992 |
