Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0008410 | OGI:03016220 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:6186387-6194931 | ||||||||
| Gene Symbol | LHS1, OsMADS1, LHS, lhs1, lhs, lhs2, op, nsr, MADS1, LHS1/OsMADS1, Lhs1, AFO, OsLHS1, OsLG3b, LG3b, qLGY3, LGY3, DLN80, OsDLN80 | ||||||||||
| DNA seq | ggcgatcgcgacagcagcagagacaacatcattatcaatatctcatgagataacagctgccgtcttaaaacatttcttgcactactccctaacataatctccacaagtttttgagattaggtactctcccagatcatcacaaatataaatttaagtgccaattaacttgttaccacatccaaaacggaaattgttatacatggacggtcctacgatacagtgacagatacagacatacagtacgtgcatcaaacgaaattattattcccctgattaactgtttgggggagaaggtcgtaagagagcacgcacgtacttagcaaaatatagatcagggattacattacattacattacatatgccctgtaattactggattacaggacactgtttgcattggcttctctgaagcctgaagcctgaactgaacacacacatcatatccagccggatgggatgtgttcattggggtgatgagcaaccatgtctgctgcttcattgctcagatggtccatgtaggcctggtgatggtgagcatgagggtgatgataccttcaccaaggaaaaattaaattaaagctatgaaaatgatggagtatatatacataaattttaaattactgaataacaaagacaaaattaggcccaatttgatctagattattgggcgaattattgtcaggattatcgatatactcgattatatagttataaattaaatgtttgaaaaaaaataaaatatacaagtaaatcgagataagtggtctaagtaatacatagcaaaccatcttttaagaaagtgtattgttcgaacttgagcaaatactctgtttaataatttagtgaatagtttaaaaagaacatgacctctgcattttgggaattttttcaggcaagaaattaactgtaactggaagaaaagaagaatacccaatctgcagggaatggtcaccctgatctgggtgagggtggagaagaccctgatggtgatgaggctgatcagcaagaacagtgctagaaccgctgtgcccaccaccatcttgccaggacatatggagcacattctctgcactggtttcctgtaactgcacgaacaaacaaacgcttcagcggtatgagaagctgattaacttttaagccgtaccggggaaaaaggtttattccgtgcaaatactgtaactttcgtgaaacattttagcagccatgaaaagatcatggttgggactttagcaaggaaaaagatgtatgttgtccgaatactgatgcacgcaatgactttcagggtgatcgatggctgtgttacctttttcctcaagtctttgttgagatcttgcagctgttgctcctgcagaatcaattttagtgtttgtcatatgtgcacagatttaatttaggtgcagaggaaaaaagaaaagaaccagaatttattcagtaccttgctcttcagatcaaacagctgatcaagcagtgcttggttctgcagaaatattgagcctgtgttaaaagccattcacataaacaaatccatacagttgaggggtaataagtaccgaattacatgatagttgcagtaaaaaattataataagctcattattaatctaatctaggttcagtgtttaagaagagcatatcaaaaagtgccatttgcttgcataggtaacatggcgaacaaacatttttacctttcttgacctgatttgtttgagggatacttctatctggttctcaagctgctccagctccttcatgcttagtgggcccaaatcctcaccaagaatatttctgcatggtgtgaagtgcttgctagtaagtcatagaaactctgtccctcaggaagaacatagcaactctgtagtagataagaagctgaaatgattgaccacattcatctctgaagactacctctgtgtggtttgaagaaattcaactcttgttttcagcttcaggtattcttggtaattaatctggtttaaacaacaaaattgcagacacacggattagctcatgactcctgaagctacaagatatctgaccatattggccgaaggggaaaaaaaagatggttaacaaactgtaggcacaacaaagtattcaggaaaccatgtagcattttaattgcaaaccaagtctactaaattcactcctgttttagactatcagctaaacctacttatgcatgaggaatgttaacatagacaacatggcatcaatctcttcggatccgaacagaaacctctcacaattctaagcccaatttaagtaagcatattcggcccaaagtcataatgcgccctacggcccacaacctccgacgtgggccgtatctcgccctacggcccattgaatgtaaggccttcgtcccccgcggcatctagcattgcggcccatctaaactgttagctattaatgggccggcctgttaacctacgcacggtaagagcccagctcattttcacttgcatgagcatcactgcacatatcagagcaaaacatgaagctagagaaaaccctatatatgcattcgacattaaggataacatcaatgtcccaaaaaaattaacaaagataacacgacccttcatctcataagaaaaaaaagggtaacataatcctttttagtgagtagagaatactataagcgaataactgactcataaatcataatatatgttctgctagtaagaagtaattgatttgtcaaagattgttaattaagaaactaagaggatgcttacttcgttttctggagctgctgcatcctgtgagttgtagttgcagctgcggtacctctccaaggttttgtacatgctggaagtgaaaaatgaaggaataagtgaattaattaatgaacctgaacttgaatttagtactgaatgaggtgcagaactgcagatgcagcatatatagtcacacattcgaacattgtacgtagaattaattaatggtgaatcaaattaattagtcatgaagaataaaaatgcatggacgctgtatagtttagcacattattatatataaattgattagtggaacccataaagctagctagctaattaacagtgctccttgtatgtataaattttctaatatagaaattactacagaaggtattattaatttaaattcgaaatagaatactattctgaattgaacacacacctactgtatagttttgatttgcgcaagctatatatgctcatgtataccataattaagcaatttatattattctgaagtttattcagaaagagtgtgatatatcatacataaattcataatgatagatcgtaaattctaaaactttggttttgtttcatccaaatccaattgacatttaagcatttaagttgtgcatatttattcaaagttttatttcaaacggcacaaaaaagaatgtacaaggatgttcacacatatgaaatggacaaattgacgaagttgttaaacaaaggatatttagcgttcgcgcaaaaaaaaggagaggatattttacaaattggttcaaggagaaatctgtaaggagcatttgtcaaagctatgacctttgagttaatatatgggcttaatgtaatttggtaacctgatttctctattatgcattaatgacatgcatcttaatttcaaagctacctttgagttaatatatgaattgttgctacgatgcagttaataatgtattagatgaaactttcatgttgacgcgatcctgatttctcataaaaatacaccacattatccaaaataaataacaccacatgaactcctacggttagaaaacacaataatattttccactctacaagaaaaatcaatggactgtaataatatattctcaaaagagatatacgtataatataactgtgctagcaactataacaaaatctgatgagctgaattttgttgacggcaggtggcaacctagcaaatcctgtagactatcttagcacaacaaatagaatcagaacagaggaagatatgtcttcatatcgtatgggctaattaatagaaaagatcagatttgagaatatctcctatatagtcatatttctgtagaatcacttatccaaaatgcatagcaaaatagaagcacagtacagggtttttgttccctggtctatatgaccttgttcacaaaataaagctattcttgttggggcatttttgttaggtttatacatatataccattttttcctcttcttaatttgagccaaaaatacgtgtttgccacagaggattacatgctatatatatgacattttttggacatatcaaattgaagttttttatatgcttgggagcaaagagaaattatgttacatatatcatattatcaagaaattaaagtaaaggaggacaaataatttctattttccacttgaaaagtacaaatttgcactatgatgctaattagtagatacctaattgggttgctgcatcagtgggtaaaatggctactgtgtctaagattgatccgaagggttcaacaatattagccaatatgtagaacatactccctccgtactcgtaaaggaagtcgttttggacagtgacacggtctccaaaacacaattttgacttcttgtttctataaaatatttattgaaaagtgatatatgtatacttttatgaaagtatttttcaagacaaatctattcatatattttttacatcttcaaactcaacaacttgagagttattcatgatttatattcctaaggtttgacttaaacattgtcctaaacgacttcctttatgagtacggagggagtaatttgtagcataaacacatgtttaattacaaacaaaaggtggggattgacactcagctatagttccccatagtgtatatcccattttaatttacacaaaatgatgatttgcgcaacattctttgcatttctctaggttcccactaataatactagtatatatcatgtactaattcactaacagttttttttggttcactctccatatctcccatttcaaaacctagatgcccaaattaatgtccctcttagcccaacctagtctgcctatatcaggtgaatataataattaacctccgttcatttgttcagtgactttgatttgtttaaaataggtacaattttgcgattctcataaaattatggggaaactaaattaacattcattttagcttgatgccagtttggaaacacggtaaaagtgggcatatatagtgcatttattaggattacaaaattaatatgaggtagttaaaaaaactataggagtagttaatagctacttcctccatccaacaataagcatttctagaatgtttagcaaagattaagatggttgggaagggtgattgggggtaaagtagcaagaaagtttgaattagagatcattaatttgacaagtacaagctaatagtgcaggatgtttatatccttgaccagaactggctcaaatgcttatatatatatatatatgcatacattttcttataatgtcccgaaaactagtagttccaatagcatttcccatgcacctttttagagagtaatatcagtaaaaaaatatttttaagtttgaacaagtggatacctttccaatttggtactgcacgcaccgttaaagattgcaaacgattaattcagtcatttttttaattccaagcatatatagtaaaaaaacacagcaagcaaattcaagaatttttatgatctttttgtatggagcatttttgtgatattggtgatatatgttaattcgtaactccttgagatgcgacatagctagataacggtacctcagctccatctcaagtacaaaaatatagtagctcttccaggaacataaaaaaggatctaccaaacaagaattggaaacctgtataattaactacttcatcctccaaagaaaaattaaagttactccaaaagaaaagtaaagccagagaacaactaattaattgctgtgatcctagctatttcgttatacatgcatagttcctcttttctatttactgtacgaggttaatgaaagtttctttctttttcagataattaatgtaatgaaagtttctttgtgttcgttttccaatggttctttgtcccaaattacaaggcaccctgtcctttagaaaattcaagctcggcaacttttgattaatgaccatgctaatcatacaagtatatgctaagtattatacatgttatatcactatatttgttttaaagtattttcatatgatgctaatttcatattcatagaaatataacatcaaacaaattaatatttaaagtatatcattgaaaaccgtgtaaaataaataaatgagtgctttaattaggaggaacgaatatgtgagtcagcaagacatgtataccagatttagcaattgtgcatgtgtgtgtatagttaataatttcagaaaaccgatgcatgcaggactagctctgcctatacagttcaccgttcaattctctgagtagaacaagacaggaaaaagaggaaaaaccgcaattaatgattcaataccctgtcccaacaacaaataaacggctcatccagcttggtcacacatgatcaaagtgagttctgcgtgtccatataggagtattatattgcatgtaatgcgtgctgacctgcttgatatgacacgtctgaagctctgaagaaaaacacatcacttgatgtgtgtgctttgcagggcagtagtagtatttctactgctcgggactcgaggaagatgaccaaaagaaaaaaaaaaaggaacaccggatcggaaaaagagaaataaaacaacaacgtgtacgcgctctcttcaatagaacagtaactaatggaacagtaacacactaacacacagatcaggctagctgtagtaataaaaaaggactttggaaattaactaaacgagtttaattaacactcgtacatacatgtactatatatacgtgtgtataatatatccatccatggctagctggaccactggctaaaactacaaagtgtatatacctcttgcaagaaaagctatatagctatacatatacataaccgggctgggcctgcaggttcattttgacaccagctaccgtgcctcaatttggacgagtccacaaagaggccatccgtgtaataggcagaaatgggaaaaaagggaagtgaaataatgcagctggtagagagagagagatgagtctcagaaagtgaaattctgaaatagctaaaaatgggagaagcaagcagcaacccagaagggattgctcctttgttcttaccccttgcgtacagttatactgtgtgtgtgtgcaaagaggaaccgcgtcgagttgtcgcgcgcctcactttggaaaatggaaataatcaagaaatctacctcgggatctgaactaattgcgtattatatatattttcctgtttgattattttgggatctgaagctagaacatgtgtgtttctttttgataaaagtagagatgagagtatatatacgtacgctcgtgtgtgtgtttacagaaaacaaaaggagagagacagatcgatgaagatgaaactcgattcatatatatatagttcttttagaaaaaaaaaagaagaatctttgaatgaaaaatagcaagggaagaaacagcaagatcttgtcttgaagaaaaaaaatagaaggatctattgtcatgtttatgcagattcaaggcaagaaatagcaacgattgaggtttatttcgccagatcttggaggtcagactgctcagacgacgtcggcaaaggatgagaagaaatcagatatggcgaacagataagtgaagcactaaaagcacgcgaaaacgaaatctgatatatgcatggcagctgatactacaaaaagaaagagaaaaaaaagagggatcgatggacatagccgctctcgaaagctgacagatacatatgccccaagatctatagcatatgagctccaagcagatcgaagggaaaaaaaaacaaaggggaaagtgcatgcgttcgtatatataaagatcaacaaaagctagaaatcgatcgacacgattaaattagctagcctgcagtccaatttgtctccccactccctcgatctcgaccggattttccctcagatcgacgagtgtttcactgatcataaccatatatactgttcttatcattttatttagttagggttaattgattatcttattagacttagatcgatcgatgatgatgcgctgctgcgccggaacaagcacgccggcggcggcggcggcgttggtttggtgctatacgtaccatgatgagctggagaactcgaagaggcggccgcggccggagaagatgatgagggcgacctcggcgtcgcagaggagggagagctcgtaggccttcttgagcaggccgttcctgcgcttggcgaacgtcacctgccggctgatcttgttctcgatccgcttcagctccaccttccccctccccatcttcttcctcctcctctcctctctctctctctctactactctatcccctttgcaagctagctttatggtggtgtggtttggctacctgatcgt
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| CDS seq | atggggagggggaaggtggagctgaagcggatcgagaacaagatcagccggcaggtgacgttcgccaagcgcaggaacggcctgctcaagaaggcctacgagctctccctcctctgcgacgccgaggtcgccctcatcatcttctccggccgcggccgcctcttcgagttctccagctcatcatgcatgtacaaaaccttggagaggtaccgcagctgcaactacaactcacaggatgcagcagctccagaaaacgaaattaattaccaagaatacctgaagctgaaaacaagagttgaatttcttcaaaccacacagagaaatattcttggtgaggatttgggcccactaagcatgaaggagctggagcagcttgagaaccagatagaagtatccctcaaacaaatcaggtcaagaaagaaccaagcactgcttgatcagctgtttgatctgaagagcaaggagcaacagctgcaagatctcaacaaagacttgaggaaaaagttacaggaaaccagtgcagagaatgtgctccatatgtcctggcaagatggtggtgggcacagcggttctagcactgttcttgctgatcagcctcatcaccatcagggtcttctccaccctcacccagatcagggtgaccattccctgcagattgggtatcatcaccctcatgctcaccatcaccaggcctacatggaccatctgagcaatgaagcagcagacatggttgctcatcaccccaatgaacacatcccatccggctggatatga
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| Protein seq | MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGYHHPHAHHHQAYMDHLSNEAADMVAHHPNEHIPSGWI |
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| Function | MADS-box transcription factor 1 [UniProtKB/Swiss-Prot:Q10PZ9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0008410 | OsLima_03g0008410.01 | Chr03 | 6186387 | 6194931 | - | NAM | ||
| CDS seq | atggggagggggaaggtggagctgaagcggatcgagaacaagatcagccggcaggtgacgttcgccaagcgcaggaacggcctgctcaagaaggcctacgagctctccctcctctgcgacgccgaggtcgccctcatcatcttctccggccgcggccgcctcttcgagttctccagctcatcatgcatgtacaaaaccttggagaggtaccgcagctgcaactacaactcacaggatgcagcagctccagaaaacgaaattaattaccaagaatacctgaagctgaaaacaagagttgaatttcttcaaaccacacagagaaatattcttggtgaggatttgggcccactaagcatgaaggagctggagcagcttgagaaccagatagaagtatccctcaaacaaatcaggtcaagaaagaaccaagcactgcttgatcagctgtttgatctgaagagcaaggagcaacagctgcaagatctcaacaaagacttgaggaaaaagttacaggaaaccagtgcagagaatgtgctccatatgtcctggcaagatggtggtgggcacagcggttctagcactgttcttgctgatcagcctcatcaccatcagggtcttctccaccctcacccagatcagggtgaccattccctgcagattgggtatcatcaccctcatgctcaccatcaccaggcctacatggaccatctgagcaatgaagcagcagacatggttgctcatcaccccaatgaacacatcccatccggctggatatga
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| Protein seq | MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSSSCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMKELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQETSAENVLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQIGYHHPHAHHHQAYMDHLSNEAADMVAHHPNEHIPSGWI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0215400 | RBH | 0.000000 | 0.0 | 130.019485 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11614 | RBH | 0.000000 | 0.0 | 29.526859 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0215400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008510 | RBH | 0.0 | 0.0 | 81.173294 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008480 | RBH | 0.0 | 0.0 | 55.731968 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008560 | RBH | 0.0 | 0.0 | 157.260971 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008570 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008430 | RBH | 0.0 | 0.0 | 249.345947 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0101600 | RBH | 0.2708625 | 0.4359455 | 192.567818 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008360 | RBH | 0.0 | 0.0 | 21.357540 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0102000 | RBH | 0.505461 | 0.033182 | 111.1794585 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008470 | RBH | 0.139771 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008440 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008450 | RBH | 0.0 | 0.0 | 38.917862 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008420 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008450 | RBH | 0.0 | 0.0 | 56.054993 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008320 | RBH | 0.0 | 0.0 | 169.793259 |
