Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0008270 | OGI:03016030 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:6046946-6066275 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gagcctaatgtttaattctcatgaaactttggaccaaattactaatacacgaatatttccaggccaaagccaaaattcatgcattgttgaagcaaatgaagcattcgtgaaattctaggctgaggttaatacccatggttaatactaacaaaatttaaggccagaggctaataaacattgactgttatggctagtaatagacaatgagatgaaggagaaatgagatgaatgagccacctccaccgttcatttcataatattcgcggcccgtcatactgtatgtaagctcccaagggctcttaagataagatatgctgaacaactaaaccacggcaagatcggcactgctgagtgttgggccctacagtagatgagcattgcattggtaagccaacaagagcatcacacaccctttgcaagatgcccaagtgagtactcctgatcaaacccaaggtaggaatccgacaccaaaattagcttcgtctcctgaaaaagaatcgccccatcagtacatataaaaaaggttaataaggatcagtggaccagctaagcacacagtttgagctagatctccaacaacgtatctaactctcccagttatttttgaaaagacaaaaataacagaatcatccagaacagtggcacggaaagcttagtttagtggtactggtagttctttttcccagttttttattgctttactttgtacacattcctctatgttgcttgctaaaaattcaagaaggctcagaaaattgacacaataggttgaattcgaataatgaatagagtagtttcgacctgtaactggcaaggagtaaaattccaaccattctcaatctgcccagctaagttcaaggtacatacaacttgtctattcctcaggttcaacaatatacatcatcctgaaatactgctagactaacattttctagctgatacacaatgaaatatcacaaatgacaagacaaaaggtaatctattaacgatttggtgtcagctttgtgatgctgaaggctcgttatactaagttgctaatcagtttgtcattgctattgcctagaactaaaaatcaaaagaatcaacaagccaaaatatggaacatatggaagtcacgggcacagacatcttgaatcactcaaaacagtaataaaaatctttaccttgagcttagcttagcctagaaaatttgcacatggtgtagtgttttaatacctgtatatcaaacattgctggcaattccatccgagtgttaaccacccgatccataaaattaattcttttcagaccatagagctctgaacttctaatgttcccaaggaccagccaccaagcttcttgttttgcctacagaatacagtatcaaaatgttgaatacagatcagcacacagtcccagcacataattctatactttgtattatgaatcattcacttagatttccataacatatatcaattttgcagattataagttgatttgtttctttcgtactgttatgctgagccagtattaatttacaattctcaaaggtagttattcttcaggcatactcttgcatggatattcaaaatagttaccccttctttagttgttgtcctagaatgcatgaagtaaaaaaatcatacacacaaaagtatttagatcagacaaattatagtacaatcttcaccaaatcttgtactcctatttgttttatataaaaaccatcatataataagaataggaaacaatcaagcatattcatcgaagaggtcatcaatgtcaaaaagtgacaaacataaagaaaatagtaagataagtaatattaaaaccagtagcctggtacttcactgtgattagtgaactctgtacatttcatgtaatcagtatagttactgaccttgggaaatctaggggaaaacgctcttgatgttgaacggcgcgcatctttcatttgcaatctaatgcttaaaattggaggcctggactggtccttatcttcattctgaagcttaagttttacatccacacaagggaaatgttgcagatcctgcataatgcaaaatccagcattcattcatgagttaatgatgtgatggcatctccatcgagaattatgtggataaaaaccaatgagataattgcaaggaaactatttttgagggaaacaagtcaaacaactgcacagaaactacaaaattacccagctatacaaaatgtaaaggaaggagtgacacggagttttgacttgctacacaatagagaaaaccttaggatcctgagacattttgttatatcgtacaaaatattcaataactacaacagtaaatactgtagagctagaaaatttaaagttctgctgagcacggttcaaatactgctggttatcagcagaaccggatttcccactgaggtccagaatttgcatcgctcctgtgagtgttatctactgctatttaatgttcattagactgagggtacatacatatttatgtgttctttgaagctgataattctacaaacttctaaagtaaactgagataaaaacgagtatggtccatgatttacttggtaaagttgaaaaaaatgtccaacccagggttttaaccctggtacaaagcatagtgataggtgggtgaacctaacacatgatatcttaagcaggattgaatagcagattccctagcattcttctcatttttagaatacagtacatgaaacaataataacactaaaaatgttgggtggtgctgatttcacaacagtcaccacattctgataagagaaaaaaagaatctgctctgtttgcatttcctcttggctgcaaaaagggctgggaaaagaatgaaatacagcgatgtgattgcaaataatctgttttcagctaccattgtaaaataccaaaaaataaaatcgttcttccaaataaggttagtatgtccaaactctcaagcagtacctggtacaactcagaagcagaaaatggttgaagcaacctatgtaattcttcacgagagagacctagtaaggctggaattgttgaaactcctctgcccttcagatgatctagaagattatcattcatggatggtagcatccagagcgatgaatctctctcaaaccagagaccctgacaaagttaatgaagtctagttcaaaacaatatatctatttgggattctgatacaggactaacaacaaaatgagagagggggggggggggggggagagagaaatctgagacaatgaaattgacctgtatgatcatttgtagaagatgcatacaagtcaatgcgcttgaaagccatccactattggcacatatgtcaatcatagcctgtataatacgtatgctctgatcaagaaccgatttcaaatcagtgacatagtcactaattggtaattctgctctggaaaagtgtgcctgcaagcaagaaataggggaaaaaagggggtaataaccattcattgtgcattcaaatgttatcataaaaatgccagtacaaaaataagatgatactccaaatttccaatcataagctcaaatctacttacctgaaagagtaagtttgctttaacatgtgggtcatcaaggtgttgctgatcaactgagtacgggacttttccacacagggttcggttcaagttatcctgaatcagcaaagagcattgaatacaacaaaagattgcaccatgataacaactaaattcaggctcgactaagatcataatgcatttacaaactggttgaatagcaatttctttccatcgagatatacacattaatcttgtaaattggtagatgaaaggacagggaacattaatcaaaatattaaatttgcctacatattgttttatgtccaatggatgatagtgtttgcagaagtaactaccagtttgaaaatgaactaactctctgtgattataaatatatggcgttttcgaaaagatctggtcaaacttcagaaacttcgactataaatgcaattttaataaaatccttagcttgagaacatggaaatgttatgtgagatttctcgtgagaagcactttcacaatattataaatttatcctaataaaaaaattatggtcaaagtagcacctcgaagagcgtaaaaaggtcaaacatcatatttcttttactggagcaagtattcaattgctctctgaaaaaagtaataggagaaattacctcattgtggcgtacaggaagctcatcaaattctgcagaagctgacagtatgtgcacaaatgcctagaaagcaatttaggctgttagttatataggcattccaaatcaactagcactacaagcaggttgaactaataatgttgcaaacaaatggggcagcacttttacttacctctaatgatgtgttggggcctatatttgtcccgaacattgagactgtaaggtaactaaggtaatactgtgacgctatctttcccaaaatcaagtactttacagagtgatcatccacttttatgcatccactgtcctcaagatcttcaaatgttgtttccactagcctgtttagataaatgtgagaagtaattggtctcatgtgatgttatagctagtggcagatgagatctaagacaacagaagtcatcatcatcaccttgagaggtagcaattcaaggtgtacgtttcagtatcttccaatccatagtaagctgggttaacaacctgccatgcagaaaccaaatgttggtaacgaaccaaaaggaaatacaatagattcatacgaacatataagaagttacactgaattaaagtctttagtcatttttagctgaaaacttcaaatagccacagatttaaccagtgtaataagaatgtcgacagttcactgcatcaattgtcaactactagccatatgatttatagtaatgattctgttttcaactttacaagagtaggaacggtttccacccaaataattgagttgagatagaacacaaagcatgctgaaaccagaatgactaaatacttttgtttcttcaatgtaagtta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| CDS seq | atgctcgcgccgctcccgcgcctgacgagcgcgctccgcggccactacgacgccgaccaggcctacctcctccgcaagtccgcgctccaatccctcaagctcccgaggccgcgcgacgagtgggagctcgcacggaagatcgtccccgactgggacgatgcgcccagtgatgtgcgccaggcgtacaagcagttcctcggtgccgtggtggagttgttgaatggggaggtcgtgtctgaagagcttcaggaagttgcccctgctgtgtacgccttgtttgctggcgatgatacgcagtctaatctcgctgacaatgtccttcgcagaaggaatgaattggagaaccttgtgggttacagtgtgcaagactctgttttaaagaagctagctcagttagctcagatgctctgttctctccaacgggcaaggggccatgaacttgttcagataaatgcagatgaaagtattacaagtgaatttggagcaaactttgatttcaaaccaccttctcgtttcattgttgatgtttcccttgatgatgacctacccttaggaagtggtgtattgagctctaaacctgctgaacatgatcaatacgatgccagcagcgcatccgtaagtcataattcagtttctcctgggggttatgtaaatttgaggtggctaaaggatcagtgtgatttgattactagaagtggtggctcagttctctcaggagatgaacttgcaaaggctttgtgcagagtgctcctatctaataaagctggcgatgagatagctggtgaactgttggaccttgttggtgatgctgcttttgaaacagttcaggatctcctttcgcataggaaagagctagtggatgcaattcagcacggattgatgatattgaaatcagaaaaaatgtcttcaagtaatcaaccaaagatgccaacatatggcacacaagtaacagtacaaacagaatatgagcgccagcttgataagattaggaggaaagaggaaaaacgtggcaagcgtggtacagaaactgcaacaaatgatattttttctgatgatttttcatcatttctcctggcgagtgaaagaaagcagccatttgatgatgtggttgggactggagaaggggcgaacagttttactataacttctcttcctcaagggaccacaaggaaacatatgaaggggtatgaagaagtgaaaattccaccaactccaacagcaccactgaaagccaatgagaagctgattgaaataggagagttggatgaactcgcccaagctgctttccagggatacaagtcactcaaccgtgttcagagtcgtatttttcaagctacatactacacgaatgagaacattctagtttgtgctccaacaggtgctggcaaaacaaatattgcaatgattgctgttcttcatgaggtcaaacaacacttcagagatggcattttgcataaaaacgaattcaaaatagtctatgttgcccctatgaaggctttggctgcagaggtaacatccacattcagtcgccgattatctccgttgaacctggttgttagagaacttacaggagacatgcagctgaccaaaaatgagattgaagaaacacagatgatagtgactactcctgagaagtgggatgttattacacggaaaagcagtgacatgtcactgtcaatgttggtgaagcttataatcattgatgaggtgcacttgctaaatgatgatagaggttcagtcattgaggcgctagttgctcggactcttcgccaggttgagtctatgcaatcaatgattcgcattgttggcctatctgctaccctgcccacttacttggaggttgcacaatttttgcgggttaatccagatactggtcttttctttttcgattcgagttaccgtccagttcctcttgctcaacagtacattggaatcagcgaaagggattatgccaagaaaatcgaactattcaatacattgtgctatgagaaggttgtggagtccattaagcaaggtcaccaagcattggtttttgttcatactcgtaaggatacggggaaaactgctagaacattgatcgacctagctgcaaatgcaggagaattggagttattttcatgtgctgaccatccccaatatgcattaatcaagaaagatgttagcaaagccaaaagtcgtgaagttgcagaattttttgaatctggttttggtattcataatgctggaatgattcgatcagatagaagtttgatggagcgcttgtttgctgatgggctcctgaaagtccttgtttgtactgcaacattggcttggggagtgaacttaccggctcatacagtcgttataaagggaacacaactatatgatcctaaagctggtggatggcgagatttggggatgcttgatgtgatgcagatcttcgggcgtgctggacgaccgcagtttgacaaaagtggcgaaggaattattatcacgacacacgacaaattggcttactacttaagattattaacaagtcagcttccaatagaaagccagttccttggatctttgaaagataatttgaatgctgaggttgccttgggcactgttacaaatgtcagggaggcctgtgcctggcttggctacacatacttatttataaggatgaagactaatcctctggtgtatggaatagcttgggaagaggttattggagatccttccttgggttccaagcaaagagcgtttattattgatgctgcacgtgcgctagacaaggctaagatgatgcggtatgatgaaaagagtggcaacttttactgcacagaacttggtcgaattgcaagccacttttaccttcagtactccagtgttgaggcttacaatgagatgcttcggcgtcacatgaatgagagtgaggtgattaatatggtggcccattcctctgagtttgagaatattgtagtaagagaagaagaacaggatgaattagaatccctttttaagaatgcatgcccacatgatattaagggggggccaactgacaaacatgggaagatttcaattctcatacaggtttacatatcgcgcgctccaattgatagctcctctttgcactctgatgctcaatacattagtcaaagcttggctcgcattatgagggcattatttgagatttgtctgcgccgagggtggtctcagatgacatccttattattagagttctgcaagggtgttgaccgcaaaatatggcccgaacaacatccacttaggcagtttgacagagacctttctcatgagatatgtaaaagacttgaggaaaaacatgttgatctggatcgtctttatgagatggaagaaaatgatatcggagctcttattcggttttctcatctaggaaaggtggttaaacaatatgttggatactttccatatgtcaacttatctgctactgtggaccttcttataactcctgaatttttgtggagagatcgtcatcatggcatgtcgctacgatggtggattattgttgaggattctgaaaatgatactatttatcattcagagttgttcacactaatgaagaaggcaagaggagcacctacaaagatttcttttaatgtaccgatctttgaacctcatccaccacagtactacatacgggccatatcagattcctggttaggagcagagtcactgtttactgtttcttttcataaccttaccttgccacagacacaaataacacacactgaacttttggacctgaagcctcttccattgagtgctcttggcaacaagacgtatcaagatctatacagattttcccatttcaacccgatacaaacacaggcttttcacgtcctctatcacagcgacaataacgtactcttgggagctccaactgggagtggcaagacgatttctgcagaactagcaatgcttcatcttttcaacacacaaccagacatgaaggtagtttacattgctccattaaaggctatagtacgggaaagaatgaatgattggagacaacgtcttgttactcagcttgggaagaagatggttgagatgactggcgacttcactccagatatgatggccctattatcagcggacatcataatttctacccctgaaaagtgggatgggattagtcgtagttggcatagtagaagttatgttatgaaggttgggctcatgatattagatgagatacaccttcttggagctgaccgtggccctattctcgaggtcattgtatcaagaatgcgatacatatcatcacaaacagaacgttcaattcggtttgttggtttatcaacagcattagccaatgctcgtgatttagctgattggttgggcgtgagagatgatggtctattcaatttcaagcccagcgtgaggcctgtacctcttgaagtgcatatccagggatatcctgggaagttctactgtccaagaatgaatagcatgaataaaccagcatatgcagcaatatgtactcattcaccagacaaaccagttctgatttttgtatcatctcgtcggcagactagacttactgctcttgatctcatccagcttgctgcatcagatgaaaaaccaaggcagttcctaagcatggcagataactctctcgacatgattctttctcaagtctctgacaccaatttgagacatactctgcaatttggaataggtctgcatcatgcaggtctaaatgatagagatagatccttggtcgaggaactcttttcaaacaacaagattcaggtactggtatgtactagcacactggcttggggtgttaatcttccagctcacctggtcataattaagggaaccgaatactacgatggcaaaacaaaaagatacatcgattatgatatcacggatattctgcaaatgatgggtcgggcaggtcgaccacaatatgaccaacatggcaaagctgttattcttgttcatgaaccaaaaaaaagcttttataagaagttcctgtatgaaccattccctgttgaaagtaatctaagggagcacttgcatgatcacataaatgcggagattgtttccggcactatcagtaataaagaggaggcgatcatttatcttacttggacatacctgtaccgaagactggttgttaacccagcttactatggattggaagatactgaaacgtacaccttgaattgctacctctcaaggctagtggaaacaacatttgaagatcttgaggacagtggatgcataaaagtggatgatcactctgtaaagtacttgattttgggaaagatagcgtcacagtattaccttagttaccttacagtctcaatgttcgggacaaatataggccccaacacatcattagaggataacttgaaccgaaccctgtgtggaaaagtcccgtactcagttgatcagcaacaccttgatgacccacatgttaaagcaaacttactctttcaggcacacttttccagagcagaattaccaattagtgactatgtcactgatttgaaatcggttcttgatcagagcatacgtattatacaggctatgattgacatatgtgccaatagtggatggctttcaagcgcattgacttgtatgcatcttctacaaatgatcatacagggtctctggtttgagagagattcatcgctctggatgctaccatccatgaatgataatcttctagatcatctgaagggcagaggagtttcaacaattccagccttactaggtctctctcgtgaagaattacataggttgcttcaaccattttctgcttctgagttgtaccaggatctgcaacatttcccttgtgtggatgtaaaacttaagcttcagaatgaagataaggaccagtccaggcctccaattttaagcattagattgcaaatgaaagatgcgcgccgttcaacatcaagagcgttttcccctagatttcccaaggcaaaacaagaagcttggtggctggtccttgggaacattagaagttcagagctctatggtctgaaaagaattaattttatggatcgggtggttaacactcggatggaattgccagcaatgtttgatatacaggagacgaagctaattttggtgtcggattcctaccttgggtttgatcaggagtactcacttgggcatcttgcaaagggtgtgtga
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| Protein seq | MLAPLPRLTSALRGHYDADQAYLLRKSALQSLKLPRPRDEWELARKIVPDWDDAPSDVRQAYKQFLGAVVELLNGEVVSEELQEVAPAVYALFAGDDTQSNLADNVLRRRNELENLVGYSVQDSVLKKLAQLAQMLCSLQRARGHELVQINADESITSEFGANFDFKPPSRFIVDVSLDDDLPLGSGVLSSKPAEHDQYDASSASVSHNSVSPGGYVNLRWLKDQCDLITRSGGSVLSGDELAKALCRVLLSNKAGDEIAGELLDLVGDAAFETVQDLLSHRKELVDAIQHGLMILKSEKMSSSNQPKMPTYGTQVTVQTEYERQLDKIRRKEEKRGKRGTETATNDIFSDDFSSFLLASERKQPFDDVVGTGEGANSFTITSLPQGTTRKHMKGYEEVKIPPTPTAPLKANEKLIEIGELDELAQAAFQGYKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHFRDGILHKNEFKIVYVAPMKALAAEVTSTFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIVTTPEKWDVITRKSSDMSLSMLVKLIIIDEVHLLNDDRGSVIEALVARTLRQVESMQSMIRIVGLSATLPTYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISERDYAKKIELFNTLCYEKVVESIKQGHQALVFVHTRKDTGKTARTLIDLAANAGELELFSCADHPQYALIKKDVSKAKSREVAEFFESGFGIHNAGMIRSDRSLMERLFADGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLAYYLRLLTSQLPIESQFLGSLKDNLNAEVALGTVTNVREACAWLGYTYLFIRMKTNPLVYGIAWEEVIGDPSLGSKQRAFIIDAARALDKAKMMRYDEKSGNFYCTELGRIASHFYLQYSSVEAYNEMLRRHMNESEVINMVAHSSEFENIVVREEEQDELESLFKNACPHDIKGGPTDKHGKISILIQVYISRAPIDSSSLHSDAQYISQSLARIMRALFEICLRRGWSQMTSLLLEFCKGVDRKIWPEQHPLRQFDRDLSHEICKRLEEKHVDLDRLYEMEENDIGALIRFSHLGKVVKQYVGYFPYVNLSATVDLLITPEFLWRDRHHGMSLRWWIIVEDSENDTIYHSELFTLMKKARGAPTKISFNVPIFEPHPPQYYIRAISDSWLGAESLFTVSFHNLTLPQTQITHTELLDLKPLPLSALGNKTYQDLYRFSHFNPIQTQAFHVLYHSDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVVYIAPLKAIVRERMNDWRQRLVTQLGKKMVEMTGDFTPDMMALLSADIIISTPEKWDGISRSWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERSIRFVGLSTALANARDLADWLGVRDDGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPDKPVLIFVSSRRQTRLTALDLIQLAASDEKPRQFLSMADNSLDMILSQVSDTNLRHTLQFGIGLHHAGLNDRDRSLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYIDYDITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLYRRLVVNPAYYGLEDTETYTLNCYLSRLVETTFEDLEDSGCIKVDDHSVKYLILGKIASQYYLSYLTVSMFGTNIGPNTSLEDNLNRTLCGKVPYSVDQQHLDDPHVKANLLFQAHFSRAELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSALTCMHLLQMIIQGLWFERDSSLWMLPSMNDNLLDHLKGRGVSTIPALLGLSREELHRLLQPFSASELYQDLQHFPCVDVKLKLQNEDKDQSRPPILSIRLQMKDARRSTSRAFSPRFPKAKQEAWWLVLGNIRSSELYGLKRINFMDRVVNTRMELPAMFDIQETKLILVSDSYLGFDQEYSLGHLAKGV |
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| Function | DExH-box ATP-dependent RNA helicase DExH14 [UniProtKB/Swiss-Prot:Q9FNQ1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0008270 | OsLima_03g0008270.01 | Chr03 | 6046946 | 6066275 | - | NAM | ||
| CDS seq | atgctcgcgccgctcccgcgcctgacgagcgcgctccgcggccactacgacgccgaccaggcctacctcctccgcaagtccgcgctccaatccctcaagctcccgaggccgcgcgacgagtgggagctcgcacggaagatcgtccccgactgggacgatgcgcccagtgatgtgcgccaggcgtacaagcagttcctcggtgccgtggtggagttgttgaatggggaggtcgtgtctgaagagcttcaggaagttgcccctgctgtgtacgccttgtttgctggcgatgatacgcagtctaatctcgctgacaatgtccttcgcagaaggaatgaattggagaaccttgtgggttacagtgtgcaagactctgttttaaagaagctagctcagttagctcagatgctctgttctctccaacgggcaaggggccatgaacttgttcagataaatgcagatgaaagtattacaagtgaatttggagcaaactttgatttcaaaccaccttctcgtttcattgttgatgtttcccttgatgatgacctacccttaggaagtggtgtattgagctctaaacctgctgaacatgatcaatacgatgccagcagcgcatccgtaagtcataattcagtttctcctgggggttatgtaaatttgaggtggctaaaggatcagtgtgatttgattactagaagtggtggctcagttctctcaggagatgaacttgcaaaggctttgtgcagagtgctcctatctaataaagctggcgatgagatagctggtgaactgttggaccttgttggtgatgctgcttttgaaacagttcaggatctcctttcgcataggaaagagctagtggatgcaattcagcacggattgatgatattgaaatcagaaaaaatgtcttcaagtaatcaaccaaagatgccaacatatggcacacaagtaacagtacaaacagaatatgagcgccagcttgataagattaggaggaaagaggaaaaacgtggcaagcgtggtacagaaactgcaacaaatgatattttttctgatgatttttcatcatttctcctggcgagtgaaagaaagcagccatttgatgatgtggttgggactggagaaggggcgaacagttttactataacttctcttcctcaagggaccacaaggaaacatatgaaggggtatgaagaagtgaaaattccaccaactccaacagcaccactgaaagccaatgagaagctgattgaaataggagagttggatgaactcgcccaagctgctttccagggatacaagtcactcaaccgtgttcagagtcgtatttttcaagctacatactacacgaatgagaacattctagtttgtgctccaacaggtgctggcaaaacaaatattgcaatgattgctgttcttcatgaggtcaaacaacacttcagagatggcattttgcataaaaacgaattcaaaatagtctatgttgcccctatgaaggctttggctgcagaggtaacatccacattcagtcgccgattatctccgttgaacctggttgttagagaacttacaggagacatgcagctgaccaaaaatgagattgaagaaacacagatgatagtgactactcctgagaagtgggatgttattacacggaaaagcagtgacatgtcactgtcaatgttggtgaagcttataatcattgatgaggtgcacttgctaaatgatgatagaggttcagtcattgaggcgctagttgctcggactcttcgccaggttgagtctatgcaatcaatgattcgcattgttggcctatctgctaccctgcccacttacttggaggttgcacaatttttgcgggttaatccagatactggtcttttctttttcgattcgagttaccgtccagttcctcttgctcaacagtacattggaatcagcgaaagggattatgccaagaaaatcgaactattcaatacattgtgctatgagaaggttgtggagtccattaagcaaggtcaccaagcattggtttttgttcatactcgtaaggatacggggaaaactgctagaacattgatcgacctagctgcaaatgcaggagaattggagttattttcatgtgctgaccatccccaatatgcattaatcaagaaagatgttagcaaagccaaaagtcgtgaagttgcagaattttttgaatctggttttggtattcataatgctggaatgattcgatcagatagaagtttgatggagcgcttgtttgctgatgggctcctgaaagtccttgtttgtactgcaacattggcttggggagtgaacttaccggctcatacagtcgttataaagggaacacaactatatgatcctaaagctggtggatggcgagatttggggatgcttgatgtgatgcagatcttcgggcgtgctggacgaccgcagtttgacaaaagtggcgaaggaattattatcacgacacacgacaaattggcttactacttaagattattaacaagtcagcttccaatagaaagccagttccttggatctttgaaagataatttgaatgctgaggttgccttgggcactgttacaaatgtcagggaggcctgtgcctggcttggctacacatacttatttataaggatgaagactaatcctctggtgtatggaatagcttgggaagaggttattggagatccttccttgggttccaagcaaagagcgtttattattgatgctgcacgtgcgctagacaaggctaagatgatgcggtatgatgaaaagagtggcaacttttactgcacagaacttggtcgaattgcaagccacttttaccttcagtactccagtgttgaggcttacaatgagatgcttcggcgtcacatgaatgagagtgaggtgattaatatggtggcccattcctctgagtttgagaatattgtagtaagagaagaagaacaggatgaattagaatccctttttaagaatgcatgcccacatgatattaagggggggccaactgacaaacatgggaagatttcaattctcatacaggtttacatatcgcgcgctccaattgatagctcctctttgcactctgatgctcaatacattagtcaaagcttggctcgcattatgagggcattatttgagatttgtctgcgccgagggtggtctcagatgacatccttattattagagttctgcaagggtgttgaccgcaaaatatggcccgaacaacatccacttaggcagtttgacagagacctttctcatgagatatgtaaaagacttgaggaaaaacatgttgatctggatcgtctttatgagatggaagaaaatgatatcggagctcttattcggttttctcatctaggaaaggtggttaaacaatatgttggatactttccatatgtcaacttatctgctactgtggaccttcttataactcctgaatttttgtggagagatcgtcatcatggcatgtcgctacgatggtggattattgttgaggattctgaaaatgatactatttatcattcagagttgttcacactaatgaagaaggcaagaggagcacctacaaagatttcttttaatgtaccgatctttgaacctcatccaccacagtactacatacgggccatatcagattcctggttaggagcagagtcactgtttactgtttcttttcataaccttaccttgccacagacacaaataacacacactgaacttttggacctgaagcctcttccattgagtgctcttggcaacaagacgtatcaagatctatacagattttcccatttcaacccgatacaaacacaggcttttcacgtcctctatcacagcgacaataacgtactcttgggagctccaactgggagtggcaagacgatttctgcagaactagcaatgcttcatcttttcaacacacaaccagacatgaaggtagtttacattgctccattaaaggctatagtacgggaaagaatgaatgattggagacaacgtcttgttactcagcttgggaagaagatggttgagatgactggcgacttcactccagatatgatggccctattatcagcggacatcataatttctacccctgaaaagtgggatgggattagtcgtagttggcatagtagaagttatgttatgaaggttgggctcatgatattagatgagatacaccttcttggagctgaccgtggccctattctcgaggtcattgtatcaagaatgcgatacatatcatcacaaacagaacgttcaattcggtttgttggtttatcaacagcattagccaatgctcgtgatttagctgattggttgggcgtgagagatgatggtctattcaatttcaagcccagcgtgaggcctgtacctcttgaagtgcatatccagggatatcctgggaagttctactgtccaagaatgaatagcatgaataaaccagcatatgcagcaatatgtactcattcaccagacaaaccagttctgatttttgtatcatctcgtcggcagactagacttactgctcttgatctcatccagcttgctgcatcagatgaaaaaccaaggcagttcctaagcatggcagataactctctcgacatgattctttctcaagtctctgacaccaatttgagacatactctgcaatttggaataggtctgcatcatgcaggtctaaatgatagagatagatccttggtcgaggaactcttttcaaacaacaagattcaggtactggtatgtactagcacactggcttggggtgttaatcttccagctcacctggtcataattaagggaaccgaatactacgatggcaaaacaaaaagatacatcgattatgatatcacggatattctgcaaatgatgggtcgggcaggtcgaccacaatatgaccaacatggcaaagctgttattcttgttcatgaaccaaaaaaaagcttttataagaagttcctgtatgaaccattccctgttgaaagtaatctaagggagcacttgcatgatcacataaatgcggagattgtttccggcactatcagtaataaagaggaggcgatcatttatcttacttggacatacctgtaccgaagactggttgttaacccagcttactatggattggaagatactgaaacgtacaccttgaattgctacctctcaaggctagtggaaacaacatttgaagatcttgaggacagtggatgcataaaagtggatgatcactctgtaaagtacttgattttgggaaagatagcgtcacagtattaccttagttaccttacagtctcaatgttcgggacaaatataggccccaacacatcattagaggataacttgaaccgaaccctgtgtggaaaagtcccgtactcagttgatcagcaacaccttgatgacccacatgttaaagcaaacttactctttcaggcacacttttccagagcagaattaccaattagtgactatgtcactgatttgaaatcggttcttgatcagagcatacgtattatacaggctatgattgacatatgtgccaatagtggatggctttcaagcgcattgacttgtatgcatcttctacaaatgatcatacagggtctctggtttgagagagattcatcgctctggatgctaccatccatgaatgataatcttctagatcatctgaagggcagaggagtttcaacaattccagccttactaggtctctctcgtgaagaattacataggttgcttcaaccattttctgcttctgagttgtaccaggatctgcaacatttcccttgtgtggatgtaaaacttaagcttcagaatgaagataaggaccagtccaggcctccaattttaagcattagattgcaaatgaaagatgcgcgccgttcaacatcaagagcgttttcccctagatttcccaaggcaaaacaagaagcttggtggctggtccttgggaacattagaagttcagagctctatggtctgaaaagaattaattttatggatcgggtggttaacactcggatggaattgccagcaatgtttgatatacaggagacgaagctaattttggtgtcggattcctaccttgggtttgatcaggagtactcacttgggcatcttgcaaagggtgtgtga
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| Protein seq | MLAPLPRLTSALRGHYDADQAYLLRKSALQSLKLPRPRDEWELARKIVPDWDDAPSDVRQAYKQFLGAVVELLNGEVVSEELQEVAPAVYALFAGDDTQSNLADNVLRRRNELENLVGYSVQDSVLKKLAQLAQMLCSLQRARGHELVQINADESITSEFGANFDFKPPSRFIVDVSLDDDLPLGSGVLSSKPAEHDQYDASSASVSHNSVSPGGYVNLRWLKDQCDLITRSGGSVLSGDELAKALCRVLLSNKAGDEIAGELLDLVGDAAFETVQDLLSHRKELVDAIQHGLMILKSEKMSSSNQPKMPTYGTQVTVQTEYERQLDKIRRKEEKRGKRGTETATNDIFSDDFSSFLLASERKQPFDDVVGTGEGANSFTITSLPQGTTRKHMKGYEEVKIPPTPTAPLKANEKLIEIGELDELAQAAFQGYKSLNRVQSRIFQATYYTNENILVCAPTGAGKTNIAMIAVLHEVKQHFRDGILHKNEFKIVYVAPMKALAAEVTSTFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIVTTPEKWDVITRKSSDMSLSMLVKLIIIDEVHLLNDDRGSVIEALVARTLRQVESMQSMIRIVGLSATLPTYLEVAQFLRVNPDTGLFFFDSSYRPVPLAQQYIGISERDYAKKIELFNTLCYEKVVESIKQGHQALVFVHTRKDTGKTARTLIDLAANAGELELFSCADHPQYALIKKDVSKAKSREVAEFFESGFGIHNAGMIRSDRSLMERLFADGLLKVLVCTATLAWGVNLPAHTVVIKGTQLYDPKAGGWRDLGMLDVMQIFGRAGRPQFDKSGEGIIITTHDKLAYYLRLLTSQLPIESQFLGSLKDNLNAEVALGTVTNVREACAWLGYTYLFIRMKTNPLVYGIAWEEVIGDPSLGSKQRAFIIDAARALDKAKMMRYDEKSGNFYCTELGRIASHFYLQYSSVEAYNEMLRRHMNESEVINMVAHSSEFENIVVREEEQDELESLFKNACPHDIKGGPTDKHGKISILIQVYISRAPIDSSSLHSDAQYISQSLARIMRALFEICLRRGWSQMTSLLLEFCKGVDRKIWPEQHPLRQFDRDLSHEICKRLEEKHVDLDRLYEMEENDIGALIRFSHLGKVVKQYVGYFPYVNLSATVDLLITPEFLWRDRHHGMSLRWWIIVEDSENDTIYHSELFTLMKKARGAPTKISFNVPIFEPHPPQYYIRAISDSWLGAESLFTVSFHNLTLPQTQITHTELLDLKPLPLSALGNKTYQDLYRFSHFNPIQTQAFHVLYHSDNNVLLGAPTGSGKTISAELAMLHLFNTQPDMKVVYIAPLKAIVRERMNDWRQRLVTQLGKKMVEMTGDFTPDMMALLSADIIISTPEKWDGISRSWHSRSYVMKVGLMILDEIHLLGADRGPILEVIVSRMRYISSQTERSIRFVGLSTALANARDLADWLGVRDDGLFNFKPSVRPVPLEVHIQGYPGKFYCPRMNSMNKPAYAAICTHSPDKPVLIFVSSRRQTRLTALDLIQLAASDEKPRQFLSMADNSLDMILSQVSDTNLRHTLQFGIGLHHAGLNDRDRSLVEELFSNNKIQVLVCTSTLAWGVNLPAHLVIIKGTEYYDGKTKRYIDYDITDILQMMGRAGRPQYDQHGKAVILVHEPKKSFYKKFLYEPFPVESNLREHLHDHINAEIVSGTISNKEEAIIYLTWTYLYRRLVVNPAYYGLEDTETYTLNCYLSRLVETTFEDLEDSGCIKVDDHSVKYLILGKIASQYYLSYLTVSMFGTNIGPNTSLEDNLNRTLCGKVPYSVDQQHLDDPHVKANLLFQAHFSRAELPISDYVTDLKSVLDQSIRIIQAMIDICANSGWLSSALTCMHLLQMIIQGLWFERDSSLWMLPSMNDNLLDHLKGRGVSTIPALLGLSREELHRLLQPFSASELYQDLQHFPCVDVKLKLQNEDKDQSRPPILSIRLQMKDARRSTSRAFSPRFPKAKQEAWWLVLGNIRSSELYGLKRINFMDRVVNTRMELPAMFDIQETKLILVSDSYLGFDQEYSLGHLAKGV
More
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.503476 | 0.552695 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0213400 | RBH | 5.944673 | 5.385225 | 5.670086 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g11470 | RBH | 3.793541 | 3.406325 | 1.313745 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0213400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0008370 | RBH | 1.824349 | 17.471310 | 16.160944 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0008340 | RBH | 0.652156 | 5.132906 | 5.199683 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0008420 | RBH | 2.691087 | 11.084538 | 20.811644 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0008440 | RBH | 0.275693 | 0.426652 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0008300 | RBH | 12.359518 | 26.033041 | 34.275200 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0100300 | RBH | 10.645345 | 31.977679 | 29.332408 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0008230 | RBH | 0.645308 | 0.866706 | 2.535214 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0100600 | RBH | 11.2814975 | 42.7736265 | 29.475316 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0008330 | RBH | 1.613524 | 21.004938 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0008300 | RBH | 11.242585 | 35.980148 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0008320 | RBH | 1.269745 | 1.579996 | 2.466492 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0008280 | RBH | 0.975919 | 8.669877 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G008320 | RBH | 1.350790 | 4.900429 | 5.683459 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0008190 | RBH | 3.909996 | 20.261166 | 13.421898 |
