Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0007770 | OGI:01033530 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:5748029-5751622 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gatgctgaagacctctaaaatcatgcacttaatttggaactgaaatgctgcttaaacaggtattttacaattgtttttatgagcaggtataattaaagaaataaaaaatggcataccatgcattactctctattaatgctctgatcagggtgcacaaagccacaaaaagctggggtttccaccaactatatttggcaagtgcaataccaggatatgaagataataacgtttagcctgaaaaagatattagaacatatcccttgtttaagaacatatactaattatcaatctgataagaaagcaatgagaagaacatttagttttacctgtcctctatttacgaattactcaattattctatgctcgtctttggtaatgattattgatggattataaaccaacctgccaaaagtggaaataggaaaggaaacaaaccatcttgagtgagtatacaaaaagcaagagcagcagaatgaggctatagaaactgttaagatataaaggctacagttttgctatccaagattctaattaggacatgcttccaaaaggtttccctaaaaaaagtgctcccaaaagcttcaccgtttaacttgaaattggtcagaacacctgcgctcaaagtttctacttttaatgcagatgaaacccatagcagggaagagatccccattttaaaaaaggatatgaaagagaaagaggagcagacaacaaattgtaactgaaagaagctcatcacagcaactgaattatctccaaagacctccaataagtaaggagtaggagttcggcattcaaattagcataccaagatggcatctttaatacaaattggcatggaaatccgctcgtctaactgcaagaacaatggatgaacatataggaaacacgccaagctgagatcctgccagattacagtaccaaattgtttaaccaagctaccattgcaaatcccttctcagcagcaaacagatagacagagagaactgcagcaaaagaagtacatgcagaacatcattttaatagtataagctgtgaatttgctgatttgcaataactacaaagaatcaacctgctcctggcaatgcacctcaacagctacccaccgtcgaacagagcaccacttttgctccctctgagcttcagtgaaaaaacaaatttgtagatcataaaattgtgtggtattggcctattgagggcttcctatcgttcccaacatcattgagtggctccatcttacgtactctcaccaacaaaacagaaccaccaccaccagtaatgcatgaaagcatgagacagtgggccatggccagggagacaacgtgggcacatcaagatcagctggtcatggttagcattgaacaaaattagagaacataatctcccaaccatggtaggacacagggaatgcggtggaaacaaatgttgtataacaacacagagaacgaataattactttactgaaggaaaagtaaaagcatacctagcctggtggagaaggaaatcaaagcggctagccggaccatagtgtggcagcggtttgagaaatgtcacactgttaacaactaaatttggtaaattctatcactattggcatcgaaggtgaagatcagatcgaagtggaatccaagatgaagatcgttgcggaaacagagtaagaatcggctgcagtccaaatcggctaaggtcaggtcggcagagttcgagtcggacggggctagccgatacagccgattccgataatatgactcggcgtatgtcgtcgggttcaagttgatgtgcttcaaagatgattgccacgcatggatagagtcctgggaaggcaattgtatctattaattaggatattctgtataatttccttagagatatgtttgggcaaaagtctgtcgtaaagacttatggtatcttagagtttgttagagataatagtcatgttcgttatggacgtatcttgtaattctcgggtataagtagactcgagccctatgtaaaaaaaaaggacacacatccaatacaatctcggcgcatcgccaccctttttgctttacttttcgacgagttcgtgctctcgggttgagctgcatcggtttcgatcttcaacaagaggtaaaacttgttatgacgatttatattctcaggattagtgcttccatctttatgatactctaatcttgtctatataattcgtcgagttatcatatatctcacataatcttcgataatatctctatctaacctataaccggctaacatctgttaatggaaggcagccgattaggttagacaatgatgttaacttagattatgtgatatatctaccactctatgaaacttccagcagcttgattgtctagatattgttcttcttttcatacttaatgctgcatcagttgagtttgatctattaagtcgtgcttagatttgcaatctctagcctgctttctggttgccgattagggtagtatcggagtttcagccgatcttatctgatttaactacttttattccatatgcttaatctatatgttaaatctgccctttatgttaggatcttgtcgcatctaggtatattaggcttctgtttggtatattctacttgctttaacatcttaatatagagtggtatcggagtattagccgatacatgctagatccatttgatcggctatgctataaatatatataatcccactattaatatatatttcgatctaagtgatttatactgtctcagcaaggcgaccgatctatctcaatcacttgatttaagtatatatcgatataaggattatatatcattaatatctacagccgatcgagtagatttagttctgatttgcttattgatatttgccgatcgatgtatgcatgacatcggcttgaaataaatgatatgtcatcggcacctagccgatcggctatcatttataggattaattgcggtttctttgttctatttcttgttgattgcaggatcaaatcaactggcacgctcacacacccgaaggcgagttttggacctgccctggagttaagcagatctcccaggcctcgtgttttctgtcaacacacacatctcatcctgccatttcgtcaagcataacaaaattatacttaaatttaacatccctgaaatacataaaagcttaggtccttagagcaatgcaaggaacagggaatcgaaccaaaagctaagcacaaaaggcacagaagaggaaagagggaaaataagaggtgcagacgtcgtcgtacctgcggaagaggaggcaacgattggggatccactgagccgataggaggcgaggtcaccgctggcgctgaagatggaagggttcgcgagagggcgagagagggtaccgccgggaagcaacccatcgacggggaggccactcgccgtcggctcgaaaaagaggagcgggaagaaagaaaggaagaccacaatgacggcggaggcggcgacgacgacagatgcgcgtgcccgtgtacgggacgaaggaatcactccgcaagaaggcggcagcggcggcgacggccaggcctcactccgcaagatttggggattttaggaagggaggagccgtggatgtcgag
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| CDS seq | atgggttgcttcccggcggtaccctctctcgccctctcgcgaacccttccatcttcagcgccagcggtgacctcgcctcctatcggctcagtggatccccaatcgttgcctcctcttccgcagctgatcttgatgtgcccacgttgtctccctggccatggcccactgtctcatgctttcatgcattactggtggtggtggttctgttttgttggtgagactcagagggagcaaaagtggtgctctgttcgacggtgggtagctgttgaggtgcattgccaggagcagttagacgagcggatttccatgccaatttgtattaaagatgccatcttggttggtttataa |
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| Protein seq | MGCFPAVPSLALSRTLPSSAPAVTSPPIGSVDPQSLPPLPQLILMCPRCLPGHGPLSHAFMHYWWWWFCFVGETQREQKWCSVRRWVAVEVHCQEQLDERISMPICIKDAILVGL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0007770 | OsLima_03g0007770.01 | Chr03 | 5748029 | 5751622 | - | NAM | ||
| CDS seq | atgggttgcttcccggcggtaccctctctcgccctctcgcgaacccttccatcttcagcgccagcggtgacctcgcctcctatcggctcagtggatccccaatcgttgcctcctcttccgcagctgatcttgatgtgcccacgttgtctccctggccatggcccactgtctcatgctttcatgcattactggtggtggtggttctgttttgttggtgagactcagagggagcaaaagtggtgctctgttcgacggtgggtagctgttgaggtgcattgccaggagcagttagacgagcggatttccatgccaatttgtattaaagatgccatcttggttggtttataa
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| Protein seq | MGCFPAVPSLALSRTLPSSAPAVTSPPIGSVDPQSLPPLPQLILMCPRCLPGHGPLSHAFMHYWWWWFCFVGETQREQKWCSVRRWVAVEVHCQEQLDERISMPICIKDAILVGL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.053216 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0207475 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0207475 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007900 | RBH | 0.000000 | 0.000000 | 1.625743 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007870 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007950 | RBH | 0.0 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007930 | RBH | 0.057112 | 0.052794 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007810 | RBH | 0.000000 | 5.202512 | 3.137552 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0095100 | RBH | 1.9246945 | 5.5779685 | 6.446378 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007750 | RBH | 0.018388 | 0.557612 | 0.478198 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0095600 | RBH | 1.490994 | 4.985364 | 5.212964 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007830 | RBH | 0.098051 | 1.354395 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007820 | RBH | 0.0 | 8.090537 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007830 | RBH | 0.063695 | 0.329544 | 1.157586 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007800 | RBH | 0.0 | 6.055309 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007850 | RBH | 0.000000 | 1.156589 | 1.387699 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
