Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0007710 | OGI:03015160 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:5712484-5715444 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaggaatggttcttgaagtaagggaagagtgcatccttgatgccatcctcctcccactccagctgctgccaccactcgtcgctgccctggatctcccgtagcttcagcggccgcacgccgtcgagccgccggagagcgtaacattggccgacctcgaggatctccagggccgggaagctgatcgccgggacgccccggcacaagcacgcaaggctccgcatcccgtgcaccgccagagtcttcaggcaagggaacgtcgtcggcgtcctccggtcctccgccgcggtgtcgccgccaccgtcgacgatcgcctccatgtcgtggcagtagtgtagctccagatgctccagcgccgggaggtgcaacacccagttggcgttcttgagctggaagcagttgaggatgttgatccgccggagcgccgggaggacatgggcggccgccgtcgtgtgccggaatcggatcgtctcgaggtgacggacgctcaggagacggagcctgtccagcttcggtaggcggaaagatcgacgcagctcgtcgtcggagtcgctgccgctgccgctgccgctgccggcgtcgatgacaatgtccttgacgccggtgcagctccggatggcgagatgctgcagtctttccagcatgtcaaggcctcctagcgtgtccgatagcgtggaagggagcagggtgagcgacgccggcccggccatgtccttcaggcacagccgcctcgtcgagacgttggtgaagccggagagcttccggagtgcggcgacgctgctgacattgatgccgaggaacttgatggacgcgttcctcgcttcaagctcatcgaggctcgcctcggatgcggtggcggcatcgtcgtcgtcggcgttcagcctccaccgggtgtacctgctggcgaagacgtcgaggatcttcagcttctggaggcccaggatgacgttccttggtatgctgtcgagcatgttcgtgtcgctcaggagcaggtgttcgagctgcgtgaggtgcagcagctcaggcggcagagcgccgatgaaggtgccggacacgttgaggtatctgaggccgacgagcgagccgatctcgccgggcagcgccatgacgatggtgtcggagagatccaggtacgtgagcgccggcacgcaccggaggaagctcccggggatggcgcgcagcgacgtgttcatctgcagcatcagcgccctgacgccgcggcgggcggggagccgcgccgggagctcctcgatgaggtttctcatcagcgagacgcgctccgtcgacgcgcccgccgccgccggcgaggtgcgccactgctcgttcagcttcgacgcggtcttgatgccgacgccggcgcgcaccagccacctgttcctcgtggcgccgcagtcggaggcgatccagatggccatgtcgcgtatcatgtcgtgcatcctgacgccccgcgtgtcgccgacgacgtcgccgccggactccagaaggcggacgtccttcagagcggcgatgatccgcgcgcccgtctcgacgtcgtcgtcgatgctgctggagccggcgatgaggccgagcccgagccagcactcgacgagcttctccctctcgatcgagtaatcctcaggccagaggcagcacgtcaggaagcactcctgcatcgtggtggtcgggaggtagtcgtagctgaccttgagcacgcgcagcatgccggcgttctcctcctccatgccggtgatctcgtgcaggtgcgcgtccctcagcttgtcaatggcgtgtcgccacagctccgggtcggtcttggtagacagagccttgccgatggtgatgagcgcgagcggcagcccgcggcactcgccggcgacctccctggcgagcccggcgatcgccgggtgggacgtgacggccgcagccgtggcgttcatctcgaagagcgtccacgcgtcgtccggcttcaggcactccacgttgagaacccgatcggccttcatgttgccgcagacgatctccgacctcgtcgtcagcacgaccttccgcggcagctcgtcgccggcgccgccgtctggataaggaacgccgatgagcttcagatcgaagcattcccacaggtcgtctagtagcatcaagaagcctgtgttcttgaggtgctcggcgatcggcagagcacgttgctccaagtcggcgtccgagtgttcgtcggggaggctcgccaatggcaagccaagtttcttcgcgacgtcgtcctggagccgatcgattctgcattccttcgaggctactgcccagacgacgtggtcgaacaccttgctgctcgccggcggctgccgcgcggtgggaaggaagctgttgttgatggcgcggaggagggtggtcttccccacccctcccatgccgcagacgccgatgactccaacggcgtcgtcggcgatgtagccgagcgcctccttgaggtaatcctccgtcccgacggcggccaccgcgggcgtcggcgccgactggtgcgtcgtggcggcgaagctgccgaccccgcgccgcgcggcgcagatcgcgccacgctcctgcacgagctgctgcgcctgccggagcgcgcgcgacgcgcgcttgccgatgcggtagcgcgcgacgaggcggaggcgtggcatggacagcgcggcgtagtccgccgcgacggcgttcccttgcttctcggcaacgcgggcgcgccccagccagttcgccgcctcctcggtgcaccccaggcggcgcagccggtcggcggcgccaccgtcttcgccgtcgtcgacgcccacgacgcgggcgtccacgatagcgccgtgcaagctgctacgctgcgcggcgagctggccgacggtctcctccaggcggcggacgttcctcgccacgtcgagcatgtcgtcgagttcgctccacaggtggatcgcgcagcaggtggacgtgctgtcggcgacttgttggtcggccggagcgtccat
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| CDS seq | atggacgctccggccgaccaacaagtcgccgacagcacgtccacctgctgcgcgatccacctgtggagcgaactcgacgacatgctcgacgtggcgaggaacgtccgccgcctggaggagaccgtcggccagctcgccgcgcagcgtagcagcttgcacggcgctatcgtggacgcccgcgtcgtgggcgtcgacgacggcgaagacggtggcgccgccgaccggctgcgccgcctggggtgcaccgaggaggcggcgaactggctggggcgcgcccgcgttgccgagaagcaagggaacgccgtcgcggcggactacgccgcgctgtccatgccacgcctccgcctcgtcgcgcgctaccgcatcggcaagcgcgcgtcgcgcgcgctccggcaggcgcagcagctcgtgcaggagcgtggcgcgatctgcgccgcgcggcgcggggtcggcagcttcgccgccacgacgcaccagtcggcgccgacgcccgcggtggccgccgtcgggacggaggattacctcaaggaggcgctcggctacatcgccgacgacgccgttggagtcatcggcgtctgcggcatgggaggggtggggaagaccaccctcctccgcgccatcaacaacagcttccttcccaccgcgcggcagccgccggcgagcagcaaggtgttcgaccacgtcgtctgggcagtagcctcgaaggaatgcagaatcgatcggctccaggacgacgtcgcgaagaaacttggcttgccattggcgagcctccccgacgaacactcggacgccgacttggagcaacgtgctctgccgatcgccgagcacctcaagaacacaggcttcttgatgctactagacgacctgtgggaatgcttcgatctgaagctcatcggcgttccttatccagacggcggcgccggcgacgagctgccgcggaaggtcgtgctgacgacgaggtcggagatcgtctgcggcaacatgaaggccgatcgggttctcaacgtggagtgcctgaagccggacgacgcgtggacgctcttcgagatgaacgccacggctgcggccgtcacgtcccacccggcgatcgccgggctcgccagggaggtcgccggcgagtgccgcgggctgccgctcgcgctcatcaccatcggcaaggctctgtctaccaagaccgacccggagctgtggcgacacgccattgacaagctgagggacgcgcacctgcacgagatcaccggcatggaggaggagaacgccggcatgctgcgcgtgctcaaggtcagctacgactacctcccgaccaccacgatgcaggagtgcttcctgacgtgctgcctctggcctgaggattactcgatcgagagggagaagctcgtcgagtgctggctcgggctcggcctcatcgccggctccagcagcatcgacgacgacgtcgagacgggcgcgcggatcatcgccgctctgaaggacgtccgccttctggagtccggcggcgacgtcgtcggcgacacgcggggcgtcaggatgcacgacatgatacgcgacatggccatctggatcgcctccgactgcggcgccacgaggaacaggtggctggtgcgcgccggcgtcggcatcaagaccgcgtcgaagctgaacgagcagtggcgcacctcgccggcggcggcgggcgcgtcgacggagcgcgtctcgctgatgagaaacctcatcgaggagctcccggcgcggctccccgcccgccgcggcgtcagggcgctgatgctgcagatgaacacgtcgctgcgcgccatccccgggagcttcctccggtgcgtgccggcgctcacgtacctggatctctccgacaccatcgtcatggcgctgcccggcgagatcggctcgctcgtcggcctcagatacctcaacgtgtccggcaccttcatcggcgctctgccgcctgagctgctgcacctcacgcagctcgaacacctgctcctgagcgacacgaacatgctcgacagcataccaaggaacgtcatcctgggcctccagaagctgaagatcctcgacgtcttcgccagcaggtacacccggtggaggctgaacgccgacgacgacgatgccgccaccgcatccgaggcgagcctcgatgagcttgaagcgaggaacgcgtccatcaagttcctcggcatcaatgtcagcagcgtcgccgcactccggaagctctccggcttcaccaacgtctcgacgaggcggctgtgcctgaaggacatggccgggccggcgtcgctcaccctgctcccttccacgctatcggacacgctaggaggccttgacatgctggaaagactgcagcatctcgccatccggagctgcaccggcgtcaaggacattgtcatcgacgccggcagcggcagcggcagcggcagcgactccgacgacgagctgcgtcgatctttccgcctaccgaagctggacaggctccgtctcctgagcgtccgtcacctcgagacgatccgattccggcacacgacggcggccgcccatgtcctcccggcgctccggcggatcaacatcctcaactgcttccagctcaagaacgccaactgggtgttgcacctcccggcgctggagcatctggagctacactactgccacgacatggaggcgatcgtcgacggtggcggcgacaccgcggcggaggaccggaggacgccgacgacgttcccttgcctgaagactctggcggtgcacgggatgcggagccttgcgtgcttgtgccggggcgtcccggcgatcagcttcccggccctggagatcctcgaggtcggccaatgttacgctctccggcggctcgacggcgtgcggccgctgaagctacgggagatccagggcagcgacgagtggtggcagcagctggagtgggaggaggatggcatcaaggatgcactcttcccttacttcaagaaccattcctga
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| Protein seq | MDAPADQQVADSTSTCCAIHLWSELDDMLDVARNVRRLEETVGQLAAQRSSLHGAIVDARVVGVDDGEDGGAADRLRRLGCTEEAANWLGRARVAEKQGNAVAADYAALSMPRLRLVARYRIGKRASRALRQAQQLVQERGAICAARRGVGSFAATTHQSAPTPAVAAVGTEDYLKEALGYIADDAVGVIGVCGMGGVGKTTLLRAINNSFLPTARQPPASSKVFDHVVWAVASKECRIDRLQDDVAKKLGLPLASLPDEHSDADLEQRALPIAEHLKNTGFLMLLDDLWECFDLKLIGVPYPDGGAGDELPRKVVLTTRSEIVCGNMKADRVLNVECLKPDDAWTLFEMNATAAAVTSHPAIAGLAREVAGECRGLPLALITIGKALSTKTDPELWRHAIDKLRDAHLHEITGMEEENAGMLRVLKVSYDYLPTTTMQECFLTCCLWPEDYSIEREKLVECWLGLGLIAGSSSIDDDVETGARIIAALKDVRLLESGGDVVGDTRGVRMHDMIRDMAIWIASDCGATRNRWLVRAGVGIKTASKLNEQWRTSPAAAGASTERVSLMRNLIEELPARLPARRGVRALMLQMNTSLRAIPGSFLRCVPALTYLDLSDTIVMALPGEIGSLVGLRYLNVSGTFIGALPPELLHLTQLEHLLLSDTNMLDSIPRNVILGLQKLKILDVFASRYTRWRLNADDDDAATASEASLDELEARNASIKFLGINVSSVAALRKLSGFTNVSTRRLCLKDMAGPASLTLLPSTLSDTLGGLDMLERLQHLAIRSCTGVKDIVIDAGSGSGSGSDSDDELRRSFRLPKLDRLRLLSVRHLETIRFRHTTAAAHVLPALRRINILNCFQLKNANWVLHLPALEHLELHYCHDMEAIVDGGGDTAAEDRRTPTTFPCLKTLAVHGMRSLACLCRGVPAISFPALEILEVGQCYALRRLDGVRPLKLREIQGSDEWWQQLEWEEDGIKDALFPYFKNHS |
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| Function | Disease resistance protein RPS5 [UniProtKB/Swiss-Prot:O64973] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0007710 | OsLima_03g0007710.01 | Chr03 | 5712484 | 5715444 | - | NAM | ||
| CDS seq | atggacgctccggccgaccaacaagtcgccgacagcacgtccacctgctgcgcgatccacctgtggagcgaactcgacgacatgctcgacgtggcgaggaacgtccgccgcctggaggagaccgtcggccagctcgccgcgcagcgtagcagcttgcacggcgctatcgtggacgcccgcgtcgtgggcgtcgacgacggcgaagacggtggcgccgccgaccggctgcgccgcctggggtgcaccgaggaggcggcgaactggctggggcgcgcccgcgttgccgagaagcaagggaacgccgtcgcggcggactacgccgcgctgtccatgccacgcctccgcctcgtcgcgcgctaccgcatcggcaagcgcgcgtcgcgcgcgctccggcaggcgcagcagctcgtgcaggagcgtggcgcgatctgcgccgcgcggcgcggggtcggcagcttcgccgccacgacgcaccagtcggcgccgacgcccgcggtggccgccgtcgggacggaggattacctcaaggaggcgctcggctacatcgccgacgacgccgttggagtcatcggcgtctgcggcatgggaggggtggggaagaccaccctcctccgcgccatcaacaacagcttccttcccaccgcgcggcagccgccggcgagcagcaaggtgttcgaccacgtcgtctgggcagtagcctcgaaggaatgcagaatcgatcggctccaggacgacgtcgcgaagaaacttggcttgccattggcgagcctccccgacgaacactcggacgccgacttggagcaacgtgctctgccgatcgccgagcacctcaagaacacaggcttcttgatgctactagacgacctgtgggaatgcttcgatctgaagctcatcggcgttccttatccagacggcggcgccggcgacgagctgccgcggaaggtcgtgctgacgacgaggtcggagatcgtctgcggcaacatgaaggccgatcgggttctcaacgtggagtgcctgaagccggacgacgcgtggacgctcttcgagatgaacgccacggctgcggccgtcacgtcccacccggcgatcgccgggctcgccagggaggtcgccggcgagtgccgcgggctgccgctcgcgctcatcaccatcggcaaggctctgtctaccaagaccgacccggagctgtggcgacacgccattgacaagctgagggacgcgcacctgcacgagatcaccggcatggaggaggagaacgccggcatgctgcgcgtgctcaaggtcagctacgactacctcccgaccaccacgatgcaggagtgcttcctgacgtgctgcctctggcctgaggattactcgatcgagagggagaagctcgtcgagtgctggctcgggctcggcctcatcgccggctccagcagcatcgacgacgacgtcgagacgggcgcgcggatcatcgccgctctgaaggacgtccgccttctggagtccggcggcgacgtcgtcggcgacacgcggggcgtcaggatgcacgacatgatacgcgacatggccatctggatcgcctccgactgcggcgccacgaggaacaggtggctggtgcgcgccggcgtcggcatcaagaccgcgtcgaagctgaacgagcagtggcgcacctcgccggcggcggcgggcgcgtcgacggagcgcgtctcgctgatgagaaacctcatcgaggagctcccggcgcggctccccgcccgccgcggcgtcagggcgctgatgctgcagatgaacacgtcgctgcgcgccatccccgggagcttcctccggtgcgtgccggcgctcacgtacctggatctctccgacaccatcgtcatggcgctgcccggcgagatcggctcgctcgtcggcctcagatacctcaacgtgtccggcaccttcatcggcgctctgccgcctgagctgctgcacctcacgcagctcgaacacctgctcctgagcgacacgaacatgctcgacagcataccaaggaacgtcatcctgggcctccagaagctgaagatcctcgacgtcttcgccagcaggtacacccggtggaggctgaacgccgacgacgacgatgccgccaccgcatccgaggcgagcctcgatgagcttgaagcgaggaacgcgtccatcaagttcctcggcatcaatgtcagcagcgtcgccgcactccggaagctctccggcttcaccaacgtctcgacgaggcggctgtgcctgaaggacatggccgggccggcgtcgctcaccctgctcccttccacgctatcggacacgctaggaggccttgacatgctggaaagactgcagcatctcgccatccggagctgcaccggcgtcaaggacattgtcatcgacgccggcagcggcagcggcagcggcagcgactccgacgacgagctgcgtcgatctttccgcctaccgaagctggacaggctccgtctcctgagcgtccgtcacctcgagacgatccgattccggcacacgacggcggccgcccatgtcctcccggcgctccggcggatcaacatcctcaactgcttccagctcaagaacgccaactgggtgttgcacctcccggcgctggagcatctggagctacactactgccacgacatggaggcgatcgtcgacggtggcggcgacaccgcggcggaggaccggaggacgccgacgacgttcccttgcctgaagactctggcggtgcacgggatgcggagccttgcgtgcttgtgccggggcgtcccggcgatcagcttcccggccctggagatcctcgaggtcggccaatgttacgctctccggcggctcgacggcgtgcggccgctgaagctacgggagatccagggcagcgacgagtggtggcagcagctggagtgggaggaggatggcatcaaggatgcactcttcccttacttcaagaaccattcctga
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| Protein seq | MDAPADQQVADSTSTCCAIHLWSELDDMLDVARNVRRLEETVGQLAAQRSSLHGAIVDARVVGVDDGEDGGAADRLRRLGCTEEAANWLGRARVAEKQGNAVAADYAALSMPRLRLVARYRIGKRASRALRQAQQLVQERGAICAARRGVGSFAATTHQSAPTPAVAAVGTEDYLKEALGYIADDAVGVIGVCGMGGVGKTTLLRAINNSFLPTARQPPASSKVFDHVVWAVASKECRIDRLQDDVAKKLGLPLASLPDEHSDADLEQRALPIAEHLKNTGFLMLLDDLWECFDLKLIGVPYPDGGAGDELPRKVVLTTRSEIVCGNMKADRVLNVECLKPDDAWTLFEMNATAAAVTSHPAIAGLAREVAGECRGLPLALITIGKALSTKTDPELWRHAIDKLRDAHLHEITGMEEENAGMLRVLKVSYDYLPTTTMQECFLTCCLWPEDYSIEREKLVECWLGLGLIAGSSSIDDDVETGARIIAALKDVRLLESGGDVVGDTRGVRMHDMIRDMAIWIASDCGATRNRWLVRAGVGIKTASKLNEQWRTSPAAAGASTERVSLMRNLIEELPARLPARRGVRALMLQMNTSLRAIPGSFLRCVPALTYLDLSDTIVMALPGEIGSLVGLRYLNVSGTFIGALPPELLHLTQLEHLLLSDTNMLDSIPRNVILGLQKLKILDVFASRYTRWRLNADDDDAATASEASLDELEARNASIKFLGINVSSVAALRKLSGFTNVSTRRLCLKDMAGPASLTLLPSTLSDTLGGLDMLERLQHLAIRSCTGVKDIVIDAGSGSGSGSDSDDELRRSFRLPKLDRLRLLSVRHLETIRFRHTTAAAHVLPALRRINILNCFQLKNANWVLHLPALEHLELHYCHDMEAIVDGGGDTAAEDRRTPTTFPCLKTLAVHGMRSLACLCRGVPAISFPALEILEVGQCYALRRLDGVRPLKLREIQGSDEWWQQLEWEEDGIKDALFPYFKNHS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.041037 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0254000 | SBH | 0.077482 | 0.0 | 2.632422 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g10900 | RBH | 0.0 | 0.0 | 0.279876 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0254000 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0007840 | RBH | 0.063864 | 0.426370 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0007810 | RBH | 0.043330 | 0.0 | 0.215933 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0007890 | RBH | 0.0 | 0.000000 | 0.447379 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0007870 | RBH | 0.0 | 0.019855 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0007750 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0094600 | RBH | 0.3877775 | 1.729844 | 0.384921 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0007690 | RBH | 0.0 | 0.054170 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0095000 | RBH | 0.513639 | 1.7420925 | 2.293683 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0007530 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0007770 | RBH | 0.0 | 1.020281 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0007760 | RBH | 0.0 | 2.136808 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0007770 | RBH | 0.0 | 0.241071 | 0.233242 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0007740 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G007790 | RBH | 0.0 | 0.028903 | 0.123660 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0007600 | RBH | 0.0 | 0.0 | 0.0 |
