Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0006060 | OGI:03011590 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:4368366-4369637 | ||||||||
| Gene Symbol | ERF69, OsERF#069, OsERF069, OsERF69, AP2/EREBP#028, AP2/EREBP28, DLN77, OsDLN77, HINGE5, OsHINGE5 | ||||||||||
| DNA seq | ctgtcaaaattttcacatgttaaagggctcctttgccgcttgaggtgaatcaaggtcagaaagggacacaggttcaaatcaaacacaccccaaacgatacgacaactacagattcaaacaacacaaacatgaaaatttcgaccacacacgcagaattacaaactagcaagattgctttatggcaacgttaacaatcagtacaatacagtatagtacaagtaaagtacaagaactatggaagccctagctaatagtacgacgcgttgagacagtcgtcgccgaagctccagagccccacgctctcgccggcgacgttcgcttcaccggcggcgaacagcccgtccatgagcgaggcgaacgcaccgccgttgaggtcgccgaactggtcgccgaacaagaaaggatcgtcgagcgggagcaggccggcggcggcggtgttgttgtcactgtcgaatgacgccgggagcacttcgtcgtcggaggtgacgtggggctcgctccggggacgcttcttggcgccgccggcggcgtcgaggagtgcctgctgcgccgcggcgtcgtcgtcggacgacgccgacatgccctgccacgagaagtccggcagcgcgctgctgctggcaccggagctctcgctggcctcggcctctttgtcgacgaggttgacgacgacgacgacgttcggtgtcgtcgccttgggggtggcggtggcggtggtggggcggcacttgcgggggcgtggggtggcggcggtggaggaggaggaggaggggaagttgagcttggcggtcgcgccgcggaggtcgcgggcggcggcgtcgtaggcgtgggcggcggcctcggcggtggcgaacgtgccgagccagacgcggacgccctcgacggggtcgcggatctccgccgcccacttcccccacggccggcgccgcacgccccagtacttgctcggcctcgcgcggcgcccggcggcgggcgccgcccgccgccgcctcaccgccgccttcttcccaaccaccacctcctcctcctccatctcagagtcctcacgtccgaatctctcaaacgccgcctcgaagtcgtcatcacacccgcctccaccaaccttccgccgcttctccccgtcgccgccgggccacacatgcgccgccgtggcgcgccgcggcggcgtggccggtatgatgttagccagaatcgcgccgccacacatgtcgtcgttggatcttgggtttcctctcgacgatctgatcagttcgcacttcgcagtagctagttgcc
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| CDS seq | atgtgtggcggcgcgattctggctaacatcataccggccacgccgccgcggcgcgccacggcggcgcatgtgtggcccggcggcgacggggagaagcggcggaaggttggtggaggcgggtgtgatgacgacttcgaggcggcgtttgagagattcggacgtgaggactctgagatggaggaggaggaggtggtggttgggaagaaggcggcggtgaggcggcggcgggcggcgcccgccgccgggcgccgcgcgaggccgagcaagtactggggcgtgcggcgccggccgtgggggaagtgggcggcggagatccgcgaccccgtcgagggcgtccgcgtctggctcggcacgttcgccaccgccgaggccgccgcccacgcctacgacgccgccgcccgcgacctccgcggcgcgaccgccaagctcaacttcccctcctcctcctcctccaccgccgccaccccacgcccccgcaagtgccgccccaccaccgccaccgccacccccaaggcgacgacaccgaacgtcgtcgtcgtcgtcaacctcgtcgacaaagaggccgaggccagcgagagctccggtgccagcagcagcgcgctgccggacttctcgtggcagggcatgtcggcgtcgtccgacgacgacgccgcggcgcagcaggcactcctcgacgccgccggcggcgccaagaagcgtccccggagcgagccccacgtcacctccgacgacgaagtgctcccggcgtcattcgacagtgacaacaacaccgccgccgccggcctgctcccgctcgacgatcctttcttgttcggcgaccagttcggcgacctcaacggcggtgcgttcgcctcgctcatggacgggctgttcgccgccggtgaagcgaacgtcgccggcgagagcgtggggctctggagcttcggcgacgactgtctcaacgcgtcgtactattag
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| Protein seq | MCGGAILANIIPATPPRRATAAHVWPGGDGEKRRKVGGGGCDDDFEAAFERFGREDSEMEEEEVVVGKKAAVRRRRAAPAAGRRARPSKYWGVRRRPWGKWAAEIRDPVEGVRVWLGTFATAEAAAHAYDAAARDLRGATAKLNFPSSSSSTAATPRPRKCRPTTATATPKATTPNVVVVVNLVDKEAEASESSGASSSALPDFSWQGMSASSDDDAAAQQALLDAAGGAKKRPRSEPHVTSDDEVLPASFDSDNNTAAAGLLPLDDPFLFGDQFGDLNGGAFASLMDGLFAAGEANVAGESVGLWSFGDDCLNASYY |
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| Function | Ethylene-responsive transcription factor RAP2-3 [UniProtKB/Swiss-Prot:P42736] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0006060 | OsLima_03g0006060.01 | Chr03 | 4368366 | 4369637 | - | NAM | ||
| CDS seq | atgtgtggcggcgcgattctggctaacatcataccggccacgccgccgcggcgcgccacggcggcgcatgtgtggcccggcggcgacggggagaagcggcggaaggttggtggaggcgggtgtgatgacgacttcgaggcggcgtttgagagattcggacgtgaggactctgagatggaggaggaggaggtggtggttgggaagaaggcggcggtgaggcggcggcgggcggcgcccgccgccgggcgccgcgcgaggccgagcaagtactggggcgtgcggcgccggccgtgggggaagtgggcggcggagatccgcgaccccgtcgagggcgtccgcgtctggctcggcacgttcgccaccgccgaggccgccgcccacgcctacgacgccgccgcccgcgacctccgcggcgcgaccgccaagctcaacttcccctcctcctcctcctccaccgccgccaccccacgcccccgcaagtgccgccccaccaccgccaccgccacccccaaggcgacgacaccgaacgtcgtcgtcgtcgtcaacctcgtcgacaaagaggccgaggccagcgagagctccggtgccagcagcagcgcgctgccggacttctcgtggcagggcatgtcggcgtcgtccgacgacgacgccgcggcgcagcaggcactcctcgacgccgccggcggcgccaagaagcgtccccggagcgagccccacgtcacctccgacgacgaagtgctcccggcgtcattcgacagtgacaacaacaccgccgccgccggcctgctcccgctcgacgatcctttcttgttcggcgaccagttcggcgacctcaacggcggtgcgttcgcctcgctcatggacgggctgttcgccgccggtgaagcgaacgtcgccggcgagagcgtggggctctggagcttcggcgacgactgtctcaacgcgtcgtactattag
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| Protein seq | MCGGAILANIIPATPPRRATAAHVWPGGDGEKRRKVGGGGCDDDFEAAFERFGREDSEMEEEEVVVGKKAAVRRRRAAPAAGRRARPSKYWGVRRRPWGKWAAEIRDPVEGVRVWLGTFATAEAAAHAYDAAARDLRGATAKLNFPSSSSSTAATPRPRKCRPTTATATPKATTPNVVVVVNLVDKEAEASESSGASSSALPDFSWQGMSASSDDDAAAQQALLDAAGGAKKRPRSEPHVTSDDEVLPASFDSDNNTAAAGLLPLDDPFLFGDQFGDLNGGAFASLMDGLFAAGEANVAGESVGLWSFGDDCLNASYY
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.065129 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0183200 | RBH | 0.487471 | 0.000000 | 5.067736 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g08490 | RBH | 0.769552 | 0.065627 | 1.178612 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0183200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0006180 | SBH | 6.524454 | 35.578789 | 25.343203 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0006140 | RBH | 0.0 | 0.0 | 2.717478 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0006160 | RBH | 4.045211 | 16.476395 | 6.816233 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0006150 | RBH | 1.519140 | 1.199917 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0006100 | RBH | 2.466227 | 10.831825 | 18.859491 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0071100 | RBH | 3.2497055 | 65.296684 | 2.7523455 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0006000 | RBH | 0.304011 | 2.478549 | 1.314762 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0071300 | RBH | 8.018404 | 43.1458245 | 0.0261675 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0009160 | SBH | 0.0 | 0.199006 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0006080 | RBH | 0.0 | 2.375026 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0006070 | RBH | 1.851987 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0006090 | RBH | 0.652094 | 1.370925 | 4.299828 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0006080 | RBH | 0.231741 | 18.142662 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G006110 | RBH | 0.0 | 1.272385 | 2.764868 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0005930 | RBH | 0.902748 | 46.113609 | 8.584969 |
