Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0002910 | OGI:03005600 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:2074498-2077162 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctcgaaaagaatggactttgtacatcatatcaatgtgttacagtattaagaggaggttcctgtccagtgtgcatattcaccctttcactttgagccgctgctaccggagtaacattgtaccagtacctgggaattgatttctcgtctatgtgccccccgaaaattgatacagctgtagcatttggactcatactcgatggttcatctaagctgtgactttatgatgatattttgccacaacacctattcattcaggcgttccattggtgttgccgaaggtgtgaagaacattgtcaaatactgaaacagtgatatccattcaccagtagtcaccacagcaacaagagccatcagagaattcatgatagatctttgagtcaccgacaacaatcctccgtcctgaatatcttgatatcaacttcaatgcatgatgacagtggttgcatatacgcacattcttcttgacaagaataggggatccaatctcagatgatatcagaccgaagacaacagccagcctaacactatgcttattaggcattgtggttgtccttgttgcaacagggacgggataagactgattccttgtgtcatctgtttctttaatctttctagacagaatatcggacacttcatgaatcgtcctgctctgcgagtgagacatatccccattggcaaagctacacgccgtgctatgaagctcaacaaggcttattggttctgttcttcgcaaccccttctctttcatcagcaatctcaccctctcaacatcctcccatctcccagcatcagcatacatcgaagatagaacaatgtagcagcctgtattgtcatgttccagttggaaaatcctctctgctgcgtactcagctatatctatgtcattctggttcctgcttgctgtaagtagggaaccccaaaccctggatgttggatctatcggcatgctttcaataaactgtagcacctctctaagatcaccttctcgacccagaagatcggtcatgcatccatagtgctcaatctgtgggatcatgccatactcttgtagcattagattgaagtgcatccatccttcatccaccaaacctgatacactacaagcagtcaacacggagacaaaggtactctcatttggttgtagaccattatatttcatctcatcaaacatttccagtgcagtctttccctggccatgaattgcataacccatgatcattgtgttccaagagatgacatcctttgacaccattttgtcaaatatctccctcgaggccaccacatcaccactccttgcgtacatatgcagaactgcgttcataatgagagtgttttctgcataacctaatccgatgatgtaactgtgaatttgcctgcagtgcctcagcgatcccagcaagacgaatgctggtactactgttgacatggtgaaataatcaggataaagaggttgattcagtaactctaggaatagtgtaatggcttctgtatacatctccttgtacatgtaggcagcaatcatattgttccatgagaccagagttttgtttgctatcttaccaaatatcttttcagatgattccactttgccaactttaccatacatctcaagaagagcagtctcaagcaccacatgtggaagaaactgtctccgaactacataaccatgaacactccttccatacagtgaactttcagtttgagcacaggcagccagcaaattgatagcggtgaccacctcaacctggaggccctctgccctcatttgcatgaagcaatcaaatgcctcatcaggccgttcattcagcgcatacccaccaatcatgcagttccatgtcactacggtcctcagcggcatcgttgcaaacacgctcctagcataagcaacttcgccacatttgcagtacatgtccagaagcgaagtacccaccttgatatcctgctccagcccgtgcctgatcacatagccatggatctctttcccttgcatcgatgaaaattccaagcagcaagccgcgagagcggctatgatcccaacgctgtcatgttgcacttctagcgcatcatgcatctcctggaagcaagccagtgctagtgaccccagcccattcgacacatacccgtccaccattatgttccacgtgacgatgtccctaaccggcattccgtcgaacaccctttcggcgtcctcgacgaggccaagcttggcgtagaacgcgacgagcgagttgcaggtgtagacgtcgtgctccaggccaagcttgatcaccatgccgtgcgccgcgcggccctcgtcgagacccccgaggcgcgcgcagcacttgacgacgacggggaaggtgaagcggtcggggcgcgcgccgtcctcgagcatgccgcggtaggccgcgagagcgccggcggggaggcccgcgtcggcgaagccgcggatcatgacgttgtggaggaacgcgtcggggcccctgacggcggcgagggcctcgacggcctcgtccatgcggccctcggcggcgagggagacgacgagggacttggagctgccgcgcttcggcggcagcctgggtgggggctccttggaggtggcggggatgaggttctgggaggcgcaggcggtggtggtggtggcgcgagccggccgggccgcgaggacgagcggcgtggccat
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| CDS seq | atggccacgccgctcgtcctcgcggcccggccggctcgcgccaccaccaccaccgcctgcgcctcccagaacctcatccccgccacctccaaggagcccccacccaggctgccgccgaagcgcggcagctccaagtccctcgtcgtctccctcgccgccgagggccgcatggacgaggccgtcgaggccctcgccgccgtcaggggccccgacgcgttcctccacaacgtcatgatccgcggcttcgccgacgcgggcctccccgccggcgctctcgcggcctaccgcggcatgctcgaggacggcgcgcgccccgaccgcttcaccttccccgtcgtcgtcaagtgctgcgcgcgcctcgggggtctcgacgagggccgcgcggcgcacggcatggtgatcaagcttggcctggagcacgacgtctacacctgcaactcgctcgtcgcgttctacgccaagcttggcctcgtcgaggacgccgaaagggtgttcgacggaatgccggttagggacatcgtcacgtggaacataatggtggacgggtatgtgtcgaatgggctggggtcactagcactggcttgcttccaggagatgcatgatgcgctagaagtgcaacatgacagcgttgggatcatagccgctctcgcggcttgctgcttggaattttcatcgatgcaagggaaagagatccatggctatgtgatcaggcacgggctggagcaggatatcaaggtgggtacttcgcttctggacatgtactgcaaatgtggcgaagttgcttatgctaggagctttcttccacatgtggtgcttgagactgctcttcttgagatgtatggtaaagttggcaaagtggaatcatctgaaaagatatttggtaagatagcaaacaaaactctggtctcatggaacaatatgattgctgcctacatgtacaaggagatgtatacagaagccattacactattcctagagttactgaatcaacctctttatcctgattatttcaccatgtcaacagtagtaccagcattcgtcttgctgggatcgctgaggcactgcaggcaaattcacagttacatcatcggattaggttatgcagaaaacactctcattatgaacgcagttctgcatatgtacgcaaggagtggtgatgtggtggcctcgagggagatatttgacaaaatggtgtcaaaggatgtcatctcttggaacacaatgatcatgggttatgcaattcatggccagggaaagactgcactggaaatgtttgatgagatgaaatataatggtctacaaccaaatgagagtacctttgtctccgtgttgactgcttgtagtgtatcaggtttggtggatgaaggatggatgcacttcaatctaatgctacaagagtatggcatgatcccacagattgagcactatggatgcatgaccgatcttctgggtcgagaaggtgatcttagagaggtgctacagtttattgaaagcatgccgatagatccaacatccaggagcaggacgattcatgaagtgtccgatattctgtctagaaagattaaagaaacagatgacacaaggaatcagtcttatcccgtccctgttgcaacaaggacaaccacaatgcctaataagcatagtgttaggctggctgttgtcttcggtctgatatcatctgagattggatcccctattcttgtcaagaagaatgtgcgtatatgcaaccactgtcatcatgcattgaagttgatatcaagatattcaggacggaggattgttgtcggtgactcaaagatctatcatgaattctctgatggctcttgttgctgtggtgactactggtga
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| Protein seq | MATPLVLAARPARATTTTACASQNLIPATSKEPPPRLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRSRTIHEVSDILSRKIKETDDTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW |
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| Function | Pentatricopeptide repeat-containing protein At4g35130, chloroplastic [UniProtKB/Swiss-Prot:O49619] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0002910 | OsLima_03g0002910.01 | Chr03 | 2074817 | 2077162 | - | NAM | ||
| CDS seq | atggccacgccgctcgtcctcgcggcccggccggctcgcgccaccaccaccaccgcctgcgcctcccagaacctcatccccgccacctccaaggagcccccacccaggctgccgccgaagcgcggcagctccaagtccctcgtcgtctccctcgccgccgagggccgcatggacgaggccgtcgaggccctcgccgccgtcaggggccccgacgcgttcctccacaacgtcatgatccgcggcttcgccgacgcgggcctccccgccggcgctctcgcggcctaccgcggcatgctcgaggacggcgcgcgccccgaccgcttcaccttccccgtcgtcgtcaagtgctgcgcgcgcctcgggggtctcgacgagggccgcgcggcgcacggcatggtgatcaagcttggcctggagcacgacgtctacacctgcaactcgctcgtcgcgttctacgccaagcttggcctcgtcgaggacgccgaaagggtgttcgacggaatgccggttagggacatcgtcacgtggaacataatggtggacgggtatgtgtcgaatgggctggggtcactagcactggcttgcttccaggagatgcatgatgcgctagaagtgcaacatgacagcgttgggatcatagccgctctcgcggcttgctgcttggaattttcatcgatgcaagggaaagagatccatggctatgtgatcaggcacgggctggagcaggatatcaaggtgggtacttcgcttctggacatgtactgcaaatgtggcgaagttgcttatgctaggagctttcttccacatgtggtgcttgagactgctcttcttgagatgtatggtaaagttggcaaagtggaatcatctgaaaagatatttggtaagatagcaaacaaaactctggtctcatggaacaatatgattgctgcctacatgtacaaggagatgtatacagaagccattacactattcctagagttactgaatcaacctctttatcctgattatttcaccatgtcaacagtagtaccagcattcgtcttgctgggatcgctgaggcactgcaggcaaattcacagttacatcatcggattaggttatgcagaaaacactctcattatgaacgcagttctgcatatgtacgcaaggagtggtgatgtggtggcctcgagggagatatttgacaaaatggtgtcaaaggatgtcatctcttggaacacaatgatcatgggttatgcaattcatggccagggaaagactgcactggaaatgtttgatgagatgaaatataatggtctacaaccaaatgagagtacctttgtctccgtgttgactgcttgtagtgtatcaggtttggtggatgaaggatggatgcacttcaatctaatgctacaagagtatggcatgatcccacagattgagcactatggatgcatgaccgatcttctgggtcgagaaggtgatcttagagaggtgctacagtttattgaaagcatgccgatagatccaacatccaggagcaggacgattcatgaagtgtccgatattctgtctagaaagattaaagaaacagatgacacaaggaatcagtcttatcccgtccctgttgcaacaaggacaaccacaatgcctaataagcatagtgttaggctggctgttgtcttcggtctgatatcatctgagattggatcccctattcttgtcaagaagaatgtgcgtatatgcaaccactgtcatcatgcattgaagttgatatcaagatattcaggacggaggattgttgtcggtgactcaaagatctatcatgaattctctgatggctcttgttgctgtggtgactactggtga
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| Protein seq | MATPLVLAARPARATTTTACASQNLIPATSKEPPPRLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRGFADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDLLGREGDLREVLQFIESMPIDPTSRSRTIHEVSDILSRKIKETDDTRNQSYPVPVATRTTTMPNKHSVRLAVVFGLISSEIGSPILVKKNVRICNHCHHALKLISRYSGRRIVVGDSKIYHEFSDGSCCCGDYW
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0002910 | OsLima_03g0002910.02 | Chr03 | 2074498 | 2075371 | - | IsoSeq | ||
| CDS seq | atggggatatgtctcactcgcagagcaggacgattcatgaagtgtccgatattctgtctagaaagattaaagaaacagatgacacaaggaatcagtcttatcccgtccctgttgcaacaaggacaaccacaatgcctaataagcatagtgttaggctggctgttgtcttcg |
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| Protein seq | MGICLTRRAGRFMKCPIFCLERLKKQMTQGISLIPSLLQQGQPQCLISIVLGWLLSS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.647506 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0136700 | RBH | 6.024430 | 0.856870 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g04390 | RBH | 2.507226 | 1.245545 | 0.173224 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0136700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0002890 | RBH | 0.479321 | 0.833797 | 0.680881 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002850 | RBH | 0.124373 | 0.953294 | 1.090630 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002870 | RBH | 1.294194 | 0.0 | 1.434636 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0002830 | RBH | 0.395961 | 0.054369 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002880 | RBH | 12.452569 | 6.729273 | 1.759417 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0032200 | RBH | 5.7402305 | 5.87396 | 6.2140605 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002820 | RBH | 0.372776 | 0.103212 | 0.236114 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0032900 | RBH | 4.703153 | 7.059334 | 5.4482955 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0002900 | RBH | 0.851609 | 1.476717 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0002870 | RBH | 5.090539 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002920 | RBH | 1.528873 | 0.129181 | 0.506818 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0002890 | RBH | 0.961757 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G002880 | RBH | 0.657273 | 0.315511 | 1.302102 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002730 | RBH | 5.493024 | 0.0 | 3.172407 |
