Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0002250 | OGI:03004300 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:1613091-1616256 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | actcttttactcggcgcgccttgtctctctctctcagtacgaggggagtagtagtcagtagtcacagcagaagtagagcgccggtgccgtcgccaccgcggcgggggtaatgcatgcgctcgcactcgcactgcgcctgctcctccagctgtcgcgatgaggcagacgcgctcgctggcggcggcggcggccgttctggtggtgggtgtggtgctgcattgggtgggggtggtggacgcggcgacggcggcggagagggggatactgctggagttcaaggccgccgtgaccgacccgaacggcgcgctcgcgtcgtggacggcgggaggggacccctgcgtggacttcgccggggtgacgtgcgacccgtcgtcccgcgccgtgcagcgcctgcgcgtccacggcgcgggcatcgccgggaagctcaccccgtcgctggggcggctggcgtcgctcgagtccgtctcgctcttcggcaacggcctctccggcggcatcccctccagcttcagcgcgctcggccccacgctccacaagctcaacctcagccgcaacacgctctccggcgagatcccgccgttcctcggcgcgttcccgtggctccgcctgctcgacctctcctacaatgcgttctccggcgagatccccgcctcgctgttcgacccttgcctccgcctccggtacgtctccctcgcgcacaacgccctcacggggccagtcccgaccgccattaccaactgctcgcgcctcgccgggtttgacttctcctacaaccgcctctccggcgagctcccggatcagctctgcgcgccgccggaaattagctacatctccgtccgaagcaactcgctctccggcgccattgccggaaagctcaacgcttgccggagcattgacctgctcgacgtcgggagcaaccatttcgccggaccggcacctttcggccttcttggcctggtaaacatcacctacttcaacgtctcgtccaacgccttcgatggtgaaatccccaacattgcaacgtgcggcaccaagttctcctacttcgacgcctcagggaaccggctcactgggccggtgccggagagtgtggccaattgccgcagcctgagggttctggatttggggacgaatgctcttgctggagacataccaccaagcattgggaaattgaggtcgctttcagtgctcaggttcgcaggaaatgcaggcattgccggttcaatccctgccgagctcggaggaattgagatgcttgtcacactagatcttgctggtcttgctctcatcggagacatcccggtgtccctgagccaatgccagttcttgcttgagctgtgagtgtctgttaactactcaacccagtccaattcgtttgaattacagtggtttcatgtactgacagactaatttgaactactgcaggaatttgtctggcaaccaattgcaaggagtgatcccggacacgcttaacaacttgacttacctcaagttgctcgatcttcatcggaaccatcttgtaggggggattccagtgacacttgcacagctcacaaaccttgatcttctagacctctcagagaaccaactgactggaccaatcccctcagagcttgggaacctctctaacctgacccatttcaatgtgtcctacaatggactctcgggcatgatccctgccttgccagttctacagagtttcggtagctccgccttcatgggtaacccattactatgtggacctccactgaacaatctgtgtggggctagccggagggcgaaacgattggctgtgtctgtcataattgtcatagtcgcagcagcgcttatacttattggagtttgcattgtttgtgctatgaacataaaggcttacatgaggaggagtaaagaggagcaagaggggaaggaggaggatgaggtgctggagtccgagagcacaccgatgcttgcatctcctggcagacaaggctcaaatgccattattggaaagttggtgcttttcagcaagagcttgccttcaaggtatgaagattgggaggcaggaactaaggcactgcttgacaaagactgccttgttggtggtgggtcagttggtacagtttacaaggccacctttgagaatggtttatccattgctgtgaagaagttggaaacactgggaagggtgagaagtcaggatgagtttgagcaggagatgggccagcttggtaaccttagccaccccaatctggttgcttttcagggttactactggtcatcatcaacgcaattgattctgtcagagttcatggttaacgggagcttgtacgaccaccttcacgggagtcctcatacattttccagaagcagcagcggagttggtctctcctgggagcagaggttcaaggttgcactcggtacagcacgggcacttgcataccttcaccatgactgccgaccacaagtcctgcatctcaacatcaagtcctccaacataatgttagataaagactttgaggctaaattatctgattatggatttggaaagcttttgcctattctaggtagctatgaattgagtagattgcatgctgccattgggtacattgccccggagttagcatctccaagcttgagatatagtgataagagtgatgtatttagctttggtgtggtgttgcttgagattgtgacagggaggaaaccagtggagagccctggggtggcgacagcagtggttctgcgtgattatgttagggcgatattggaggatgggactgtgtcagactgctttgatcggagcatgaagggatttgttgaggctgaattagtccaagtgctcaaattaggtctggtatgcacttcgaacacaccatctgcccgaccaaacatggcagaggtggtacagtacctggagtctgttagaactaattcatgatctcctgacgtcacggtacagtagcagaataggatgttaaaacaggaaaaaacgttttctggtttttgaacagatgatcacattgtttttattctttattgtgttcccagtcacatttgtaaaatgtagatttgcatctgaataagtggttattttggtcaaattaccaaaccctgtgaggatttatctctgtttttttcgggtgctccctacaccctcttttctttctagtactgtggaaaatgc
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| CDS seq | atgaggcagacgcgctcgctggcggcggcggcggccgttctggtggtgggtgtggtgctgcattgggtgggggtggtggacgcggcgacggcggcggagagggggatactgctggagttcaaggccgccgtgaccgacccgaacggcgcgctcgcgtcgtggacggcgggaggggacccctgcgtggacttcgccggggtgacgtgcgacccgtcgtcccgcgccgtgcagcgcctgcgcgtccacggcgcgggcatcgccgggaagctcaccccgtcgctggggcggctggcgtcgctcgagtccgtctcgctcttcggcaacggcctctccggcggcatcccctccagcttcagcgcgctcggccccacgctccacaagctcaacctcagccgcaacacgctctccggcgagatcccgccgttcctcggcgcgttcccgtggctccgcctgctcgacctctcctacaatgcgttctccggcgagatccccgcctcgctgttcgacccttgcctccgcctccggtacgtctccctcgcgcacaacgccctcacggggccagtcccgaccgccattaccaactgctcgcgcctcgccgggtttgacttctcctacaaccgcctctccggcgagctcccggatcagctctgcgcgccgccggaaattagctacatctccgtccgaagcaactcgctctccggcgccattgccggaaagctcaacgcttgccggagcattgacctgctcgacgtcgggagcaaccatttcgccggaccggcacctttcggccttcttggcctggtaaacatcacctacttcaacgtctcgtccaacgccttcgatggtgaaatccccaacattgcaacgtgcggcaccaagttctcctacttcgacgcctcagggaaccggctcactgggccggtgccggagagtgtggccaattgccgcagcctgagggttctggatttggggacgaatgctcttgctggagacataccaccaagcattgggaaattgaggtcgctttcagtgctcaggttcgcaggaaatgcaggcattgccggttcaatccctgccgagctcggaggaattgagatgcttgtcacactagatcttgctggtcttgctctcatcggagacatcccggtgtccctgagccaatgccagttcttgcttgagctgaatttgtctggcaaccaattgcaaggagtgatcccggacacgcttaacaacttgacttacctcaagttgctcgatcttcatcggaaccatcttgtaggggggattccagtgacacttgcacagctcacaaaccttgatcttctagacctctcagagaaccaactgactggaccaatcccctcagagcttgggaacctctctaacctgacccatttcaatgtgtcctacaatggactctcgggcatgatccctgccttgccagttctacagagtttcggtagctccgccttcatgggtaacccattactatgtggacctccactgaacaatctgtgtggggctagccggagggcgaaacgattggctgtgtctgtcataattgtcatagtcgcagcagcgcttatacttattggagtttgcattgtttgtgctatgaacataaaggcttacatgaggaggagtaaagaggagcaagaggggaaggaggaggatgaggtgctggagtccgagagcacaccgatgcttgcatctcctggcagacaaggctcaaatgccattattggaaagttggtgcttttcagcaagagcttgccttcaaggtatgaagattgggaggcaggaactaaggcactgcttgacaaagactgccttgttggtggtgggtcagttggtacagtttacaaggccacctttgagaatggtttatccattgctgtgaagaagttggaaacactgggaagggtgagaagtcaggatgagtttgagcaggagatgggccagcttggtaaccttagccaccccaatctggttgcttttcagggttactactggtcatcatcaacgcaattgattctgtcagagttcatggttaacgggagcttgtacgaccaccttcacgggagtcctcatacattttccagaagcagcagcggagttggtctctcctgggagcagaggttcaaggttgcactcggtacagcacgggcacttgcataccttcaccatgactgccgaccacaagtcctgcatctcaacatcaagtcctccaacataatgttagataaagactttgaggctaaattatctgattatggatttggaaagcttttgcctattctaggtagctatgaattgagtagattgcatgctgccattgggtacattgccccggagttagcatctccaagcttgagatatagtgataagagtgatgtatttagctttggtgtggtgttgcttgagattgtgacagggaggaaaccagtggagagccctggggtggcgacagcagtggttctgcgtgattatgttagggcgatattggaggatgggactgtgtcagactgctttgatcggagcatgaagggatttgttgaggctgaattagtccaagtgctcaaattaggtctggtatgcacttcgaacacaccatctgcccgaccaaacatggcagaggtggtacagtacctggagtctgttagaactaattcatga
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| Protein seq | MRQTRSLAAAAAVLVVGVVLHWVGVVDAATAAERGILLEFKAAVTDPNGALASWTAGGDPCVDFAGVTCDPSSRAVQRLRVHGAGIAGKLTPSLGRLASLESVSLFGNGLSGGIPSSFSALGPTLHKLNLSRNTLSGEIPPFLGAFPWLRLLDLSYNAFSGEIPASLFDPCLRLRYVSLAHNALTGPVPTAITNCSRLAGFDFSYNRLSGELPDQLCAPPEISYISVRSNSLSGAIAGKLNACRSIDLLDVGSNHFAGPAPFGLLGLVNITYFNVSSNAFDGEIPNIATCGTKFSYFDASGNRLTGPVPESVANCRSLRVLDLGTNALAGDIPPSIGKLRSLSVLRFAGNAGIAGSIPAELGGIEMLVTLDLAGLALIGDIPVSLSQCQFLLELNLSGNQLQGVIPDTLNNLTYLKLLDLHRNHLVGGIPVTLAQLTNLDLLDLSENQLTGPIPSELGNLSNLTHFNVSYNGLSGMIPALPVLQSFGSSAFMGNPLLCGPPLNNLCGASRRAKRLAVSVIIVIVAAALILIGVCIVCAMNIKAYMRRSKEEQEGKEEDEVLESESTPMLASPGRQGSNAIIGKLVLFSKSLPSRYEDWEAGTKALLDKDCLVGGGSVGTVYKATFENGLSIAVKKLETLGRVRSQDEFEQEMGQLGNLSHPNLVAFQGYYWSSSTQLILSEFMVNGSLYDHLHGSPHTFSRSSSGVGLSWEQRFKVALGTARALAYLHHDCRPQVLHLNIKSSNIMLDKDFEAKLSDYGFGKLLPILGSYELSRLHAAIGYIAPELASPSLRYSDKSDVFSFGVVLLEIVTGRKPVESPGVATAVVLRDYVRAILEDGTVSDCFDRSMKGFVEAELVQVLKLGLVCTSNTPSARPNMAEVVQYLESVRTNS |
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| Function | Probable LRR receptor-like serine/threonine-protein kinase At1g12460 [UniProtKB/Swiss-Prot:C0LGE4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0002250 | OsLima_03g0002250.01 | Chr03 | 1613091 | 1616256 | + | NAM | ||
| CDS seq | atgaggcagacgcgctcgctggcggcggcggcggccgttctggtggtgggtgtggtgctgcattgggtgggggtggtggacgcggcgacggcggcggagagggggatactgctggagttcaaggccgccgtgaccgacccgaacggcgcgctcgcgtcgtggacggcgggaggggacccctgcgtggacttcgccggggtgacgtgcgacccgtcgtcccgcgccgtgcagcgcctgcgcgtccacggcgcgggcatcgccgggaagctcaccccgtcgctggggcggctggcgtcgctcgagtccgtctcgctcttcggcaacggcctctccggcggcatcccctccagcttcagcgcgctcggccccacgctccacaagctcaacctcagccgcaacacgctctccggcgagatcccgccgttcctcggcgcgttcccgtggctccgcctgctcgacctctcctacaatgcgttctccggcgagatccccgcctcgctgttcgacccttgcctccgcctccggtacgtctccctcgcgcacaacgccctcacggggccagtcccgaccgccattaccaactgctcgcgcctcgccgggtttgacttctcctacaaccgcctctccggcgagctcccggatcagctctgcgcgccgccggaaattagctacatctccgtccgaagcaactcgctctccggcgccattgccggaaagctcaacgcttgccggagcattgacctgctcgacgtcgggagcaaccatttcgccggaccggcacctttcggccttcttggcctggtaaacatcacctacttcaacgtctcgtccaacgccttcgatggtgaaatccccaacattgcaacgtgcggcaccaagttctcctacttcgacgcctcagggaaccggctcactgggccggtgccggagagtgtggccaattgccgcagcctgagggttctggatttggggacgaatgctcttgctggagacataccaccaagcattgggaaattgaggtcgctttcagtgctcaggttcgcaggaaatgcaggcattgccggttcaatccctgccgagctcggaggaattgagatgcttgtcacactagatcttgctggtcttgctctcatcggagacatcccggtgtccctgagccaatgccagttcttgcttgagctgaatttgtctggcaaccaattgcaaggagtgatcccggacacgcttaacaacttgacttacctcaagttgctcgatcttcatcggaaccatcttgtaggggggattccagtgacacttgcacagctcacaaaccttgatcttctagacctctcagagaaccaactgactggaccaatcccctcagagcttgggaacctctctaacctgacccatttcaatgtgtcctacaatggactctcgggcatgatccctgccttgccagttctacagagtttcggtagctccgccttcatgggtaacccattactatgtggacctccactgaacaatctgtgtggggctagccggagggcgaaacgattggctgtgtctgtcataattgtcatagtcgcagcagcgcttatacttattggagtttgcattgtttgtgctatgaacataaaggcttacatgaggaggagtaaagaggagcaagaggggaaggaggaggatgaggtgctggagtccgagagcacaccgatgcttgcatctcctggcagacaaggctcaaatgccattattggaaagttggtgcttttcagcaagagcttgccttcaaggtatgaagattgggaggcaggaactaaggcactgcttgacaaagactgccttgttggtggtgggtcagttggtacagtttacaaggccacctttgagaatggtttatccattgctgtgaagaagttggaaacactgggaagggtgagaagtcaggatgagtttgagcaggagatgggccagcttggtaaccttagccaccccaatctggttgcttttcagggttactactggtcatcatcaacgcaattgattctgtcagagttcatggttaacgggagcttgtacgaccaccttcacgggagtcctcatacattttccagaagcagcagcggagttggtctctcctgggagcagaggttcaaggttgcactcggtacagcacgggcacttgcataccttcaccatgactgccgaccacaagtcctgcatctcaacatcaagtcctccaacataatgttagataaagactttgaggctaaattatctgattatggatttggaaagcttttgcctattctaggtagctatgaattgagtagattgcatgctgccattgggtacattgccccggagttagcatctccaagcttgagatatagtgataagagtgatgtatttagctttggtgtggtgttgcttgagattgtgacagggaggaaaccagtggagagccctggggtggcgacagcagtggttctgcgtgattatgttagggcgatattggaggatgggactgtgtcagactgctttgatcggagcatgaagggatttgttgaggctgaattagtccaagtgctcaaattaggtctggtatgcacttcgaacacaccatctgcccgaccaaacatggcagaggtggtacagtacctggagtctgttagaactaattcatga
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| Protein seq | MRQTRSLAAAAAVLVVGVVLHWVGVVDAATAAERGILLEFKAAVTDPNGALASWTAGGDPCVDFAGVTCDPSSRAVQRLRVHGAGIAGKLTPSLGRLASLESVSLFGNGLSGGIPSSFSALGPTLHKLNLSRNTLSGEIPPFLGAFPWLRLLDLSYNAFSGEIPASLFDPCLRLRYVSLAHNALTGPVPTAITNCSRLAGFDFSYNRLSGELPDQLCAPPEISYISVRSNSLSGAIAGKLNACRSIDLLDVGSNHFAGPAPFGLLGLVNITYFNVSSNAFDGEIPNIATCGTKFSYFDASGNRLTGPVPESVANCRSLRVLDLGTNALAGDIPPSIGKLRSLSVLRFAGNAGIAGSIPAELGGIEMLVTLDLAGLALIGDIPVSLSQCQFLLELNLSGNQLQGVIPDTLNNLTYLKLLDLHRNHLVGGIPVTLAQLTNLDLLDLSENQLTGPIPSELGNLSNLTHFNVSYNGLSGMIPALPVLQSFGSSAFMGNPLLCGPPLNNLCGASRRAKRLAVSVIIVIVAAALILIGVCIVCAMNIKAYMRRSKEEQEGKEEDEVLESESTPMLASPGRQGSNAIIGKLVLFSKSLPSRYEDWEAGTKALLDKDCLVGGGSVGTVYKATFENGLSIAVKKLETLGRVRSQDEFEQEMGQLGNLSHPNLVAFQGYYWSSSTQLILSEFMVNGSLYDHLHGSPHTFSRSSSGVGLSWEQRFKVALGTARALAYLHHDCRPQVLHLNIKSSNIMLDKDFEAKLSDYGFGKLLPILGSYELSRLHAAIGYIAPELASPSLRYSDKSDVFSFGVVLLEIVTGRKPVESPGVATAVVLRDYVRAILEDGTVSDCFDRSMKGFVEAELVQVLKLGLVCTSNTPSARPNMAEVVQYLESVRTNS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.196076 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0127700 | RBH | 0.057662 | 0.000000 | 1.503825 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g03570 | RBH | 0.037445 | 0.000000 | 0.274754 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0127700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0002200 | RBH | 0.0 | 0.851714 | 2.158643 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0002170 | RBH | 0.0 | 1.745224 | 0.462208 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0002190 | RBH | 0.0 | 3.366495 | 1.934073 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0002180 | RBH | 0.0 | 0.359021 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0002220 | RBH | 0.0 | 24.979778 | 3.588218 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0024700 | RBH | 2.4903045 | 1.861064 | 3.422885 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0002160 | RBH | 0.0 | 0.670368 | 0.228100 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0025600 | RBH | 3.562923 | 0.4387545 | 14.577659 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_10g0017750 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0002250 | RBH | 0.0 | 11.187395 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0002220 | RBH | 0.0 | 16.329794 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0002260 | RBH | 0.0 | 0.879347 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0002240 | RBH | 0.0 | 5.853641 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G002240 | RBH | 0.0 | 4.616992 | 2.214429 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0002070 | RBH | 0.0 | 5.128665 | 1.528359 |
