Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_03g0001140 | OGI:03001920 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr03:738310-740082 | ||||||||
| Gene Symbol | RLCK95, OsRLCK95 | ||||||||||
| DNA seq | gtggagtgctatgtaagcaattaatgagttggcaacatatatagtacaatcatcaagaaataaaagaaaatgagagaattggaaacatatgattctctgaacaaatgtatttacagattttgtgcacgtttattttacgtgctggtgcttgctgaagcaggaagaaggcgtgcaaaaaacatctaaaaatttaatatgcatgcagtggatgtggattgaatcctctcttacagttgctgcatgcacttgtgtgccaacgacctagtagaagatgaacaacaatgatcgggatcggccaccaaaatactatgaaaaaactgcacaaacatcctccaaaaagtccttgtccgaaccaaaccctcgatcgttgcttgcttggttgcttttgaattttgatacgcttcgtctctattgctttcttgctcctcaccaacccaatcgcggcaaggggttccacgcgcgggagcagcatccaatcctacggtcctgatacttgccacgtcatatctaaccatcctatggcgcacaacattgcacgtcaccgtccggccttttgcgcgggcttctccagggtccgtacaacgtcggccatcgacgggcggaggctcgggttgtcgccgatgcacgccgccgccagcgccgccacggtcgccgcctcggcggcgttgtactggcaccctagcctctcgtcgacgagcttctccacgtcgccggcggcggcgcccttgagcttgggcgcgacggccgccgtcagcagcatgccgtcgcggaacgcctgcgtgccggtgagcagctcgagcagcagcacgccgaagctgtagacatcgctcttcttggtgaccacgccggagcggaggtagtgcgggtcgacgtagcccggcgagccgagcacggcgagcgccgacggacgcgggcgcgggcagtggacggccgccgagaaccccgcgcgcgccgagccgaagtcgcagagcctcgcgcccatggcggcgtcgagcaggacgttggacgacttgacgtcgccgtgcaccacctgcggctcgcaccggtcgtgcaggtactcgagcgcccgcgccacctgcagcgccaccgccacccgccgcgcccacggcatcgcgccgccgccgccgccgccgtggagctgttcgtgcaggttcccgttcggcgcgaactccagcaccagcacgccctcgtctgcatgcgtcgacgtcacagattgtcagtgaggtcgacatggtcgccggcgacgtacggacgcctagcttacagagcgagcgagtgctatacctcgctggtcgcagaacgcgaggaggcggacgatgtgggggtggcggacgcggaggagggcgtcgagctcctggcggaaggcgcgctggaggcgctcgctgctgcggtggaccttgacggccgcgagggagccagcgacgcggccgaggtagacggtgctgaagccgccctcgccgacgacggccgacgtgaacccacgcgtcatggcctccacctgcgcccacgacagctgcctcgcggacgacgtggccgccgcgttcttggcgccggcggctgcctgctgatggtccgcgatggcatcgccggcgaaccggccgggggcggtggcgacgccgccgccgcagcagagcagcctgtgccggtgccggtgcagcaacatcttctcctcgcttcgcttggtttcgtttgttcccggcaaaagcgggtttccctccgcgagacgcgtgttgcttttttgggccgcatcgtctggtgttcgtatatatagcc
More
|
||||||||||
| CDS seq | atgttgctgcaccggcaccggcacaggctgctctgctgcggcggcggcgtcgccaccgcccccggccggttcgccggcgatgccatcgcggaccatcagcaggcagccgccggcgccaagaacgcggcggccacgtcgtccgcgaggcagctgtcgtgggcgcaggtggaggccatgacgcgtgggttcacgtcggccgtcgtcggcgagggcggcttcagcaccgtctacctcggccgcgtcgctggctccctcgcggccgtcaaggtccaccgcagcagcgagcgcctccagcgcgccttccgccaggagctcgacgccctcctccgcgtccgccacccccacatcgtccgcctcctcgcgttctgcgaccagcgagacgagggcgtgctggtgctggagttcgcgccgaacgggaacctgcacgaacagctccacggcggcggcggcggcggcgcgatgccgtgggcgcggcgggtggcggtggcgctgcaggtggcgcgggcgctcgagtacctgcacgaccggtgcgagccgcaggtggtgcacggcgacgtcaagtcgtccaacgtcctgctcgacgccgccatgggcgcgaggctctgcgacttcggctcggcgcgcgcggggttctcggcggccgtccactgcccgcgcccgcgtccgtcggcgctcgccgtgctcggctcgccgggctacgtcgacccgcactacctccgctccggcgtggtcaccaagaagagcgatgtctacagcttcggcgtgctgctgctcgagctgctcaccggcacgcaggcgttccgcgacggcatgctgctgacggcggccgtcgcgcccaagctcaagggcgccgccgccggcgacgtggagaagctcgtcgacgagaggctagggtgccagtacaacgccgccgaggcggcgaccgtggcggcgctggcggcggcgtgcatcggcgacaacccgagcctccgcccgtcgatggccgacgttgtacggaccctggagaagcccgcgcaaaaggccggacggtga
More
|
||||||||||
| Protein seq | MLLHRHRHRLLCCGGGVATAPGRFAGDAIADHQQAAAGAKNAAATSSARQLSWAQVEAMTRGFTSAVVGEGGFSTVYLGRVAGSLAAVKVHRSSERLQRAFRQELDALLRVRHPHIVRLLAFCDQRDEGVLVLEFAPNGNLHEQLHGGGGGGAMPWARRVAVALQVARALEYLHDRCEPQVVHGDVKSSNVLLDAAMGARLCDFGSARAGFSAAVHCPRPRPSALAVLGSPGYVDPHYLRSGVVTKKSDVYSFGVLLLELLTGTQAFRDGMLLTAAVAPKLKGAAAGDVEKLVDERLGCQYNAAEAATVAALAAACIGDNPSLRPSMADVVRTLEKPAQKAGR |
||||||||||
| Function | Salt tolerance receptor-like cytoplasmic kinase 1 [UniProtKB/Swiss-Prot:Q7XR88] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_03g0001140 | OsLima_03g0001140.01 | Chr03 | 738310 | 740082 | - | NAM | ||
| CDS seq | atgttgctgcaccggcaccggcacaggctgctctgctgcggcggcggcgtcgccaccgcccccggccggttcgccggcgatgccatcgcggaccatcagcaggcagccgccggcgccaagaacgcggcggccacgtcgtccgcgaggcagctgtcgtgggcgcaggtggaggccatgacgcgtgggttcacgtcggccgtcgtcggcgagggcggcttcagcaccgtctacctcggccgcgtcgctggctccctcgcggccgtcaaggtccaccgcagcagcgagcgcctccagcgcgccttccgccaggagctcgacgccctcctccgcgtccgccacccccacatcgtccgcctcctcgcgttctgcgaccagcgagacgagggcgtgctggtgctggagttcgcgccgaacgggaacctgcacgaacagctccacggcggcggcggcggcggcgcgatgccgtgggcgcggcgggtggcggtggcgctgcaggtggcgcgggcgctcgagtacctgcacgaccggtgcgagccgcaggtggtgcacggcgacgtcaagtcgtccaacgtcctgctcgacgccgccatgggcgcgaggctctgcgacttcggctcggcgcgcgcggggttctcggcggccgtccactgcccgcgcccgcgtccgtcggcgctcgccgtgctcggctcgccgggctacgtcgacccgcactacctccgctccggcgtggtcaccaagaagagcgatgtctacagcttcggcgtgctgctgctcgagctgctcaccggcacgcaggcgttccgcgacggcatgctgctgacggcggccgtcgcgcccaagctcaagggcgccgccgccggcgacgtggagaagctcgtcgacgagaggctagggtgccagtacaacgccgccgaggcggcgaccgtggcggcgctggcggcggcgtgcatcggcgacaacccgagcctccgcccgtcgatggccgacgttgtacggaccctggagaagcccgcgcaaaaggccggacggtga
More
|
|||||||
| Protein seq | MLLHRHRHRLLCCGGGVATAPGRFAGDAIADHQQAAAGAKNAAATSSARQLSWAQVEAMTRGFTSAVVGEGGFSTVYLGRVAGSLAAVKVHRSSERLQRAFRQELDALLRVRHPHIVRLLAFCDQRDEGVLVLEFAPNGNLHEQLHGGGGGGAMPWARRVAVALQVARALEYLHDRCEPQVVHGDVKSSNVLLDAAMGARLCDFGSARAGFSAAVHCPRPRPSALAVLGSPGYVDPHYLRSGVVTKKSDVYSFGVLLLELLTGTQAFRDGMLLTAAVAPKLKGAAAGDVEKLVDERLGCQYNAAEAATVAALAAACIGDNPSLRPSMADVVRTLEKPAQKAGR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0113000 | RBH | 0.0 | 0.000000 | 0.365189 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os03g02190 | RBH | 0.0 | 0.000000 | 0.092035 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os03g0113000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_03g0001100 | RBH | 0.0 | 19.132057 | 6.135392 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_03g0001080 | RBH | 0.0 | 7.405663 | 1.333036 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_03g0001100 | RBH | 0.0 | 26.827421 | 2.089826 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_03g0001090 | RBH | 0.0 | 0.412521 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_03g0001110 | RBH | 0.0 | 5.125424 | 10.853554 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_03G0011600 | RBH | 11.5017335 | 6.8617765 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0001090 | RBH | 0.0 | 0.950720 | 0.831199 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_03G0011100 | RBH | 9.4109975 | 1.8466675 | 0.0155765 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_03g0001160 | RBH | 0.0 | 10.806594 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_03g0001110 | RBH | 0.0 | 11.349754 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_03g0001120 | RBH | 0.000000 | 0.692447 | 0.482764 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_03g0001130 | RBH | 0.0 | 4.404917 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_03G001130 | RBH | 0.0 | 3.945534 | 0.889252 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0001000 | RBH | 0.0 | 18.403507 | 8.250898 |
