Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0039430 | OGI:02100630 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:37698614-37702220 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gctcacacctgaatctatatattctcagtccaactgacagggtccacaacacacagaaggcattaacgagctacaacaggtgacccaaatacaactgcacaaatggttttcaattatgaactcatccaattaaaagtagtaccacttacttgtttaaggatgagaaatcggccgtgcattccaatgtgcccaacagcatgctatccggtcctccggttcttctcacgatgcaacatccatcctgtttcaatcccggaatgatcaacacccaactcgtacgtactacttctatataggaccagccacttcagttatcattgcaccaaaggaagaagcaaaaggaggaaactccttcctatctaaaatcccagaaagccaaacaacaaggctgcacgcccaaacacatcaacttttcttcctgcgtacaatcatatcaaccaaagcattccaaacccccaatccttttccactcatgttagaccaaaccaattacgaatgatttctatctttgaatatttcccaagagctcctatgcgatgccaacaaagccaatcaaatgcctaaatgcaaaacctgtgcatctctgggtaaaacgaaacaacgcatgccacagattagcacttcttttcgtatgaactatcaaccaagtatcaccacgttagaataacagcactgcattggtctctggagtaacagccacgccgtgaatgcaagacaggaccagtataacggagcaaccaagcacttaaagccccaagccaaaaggtggggacaagtgcagcttatcacggtactttataccaaaaaagtagagaaggatgactattgagcacaggaccaagaaagttcagtttcaagctattttgctggttttcggcccataggatcctggtagtatcaatcttggtccataccatcagccatgtggtgcacgatacagcctatggctgaatgcacaccaacatgatttggtggtatcatctgtgatgcggataccttagtgttggttactggctgtgtctagtggccccaaccgattggttactatacacagaatcagaatattccgtccccatgaataagaagagctacaattattaagtttgtagttctacatatgaaagcaatagagtatctacaggtttctgtaaaacattgcttactgatgagtgaagcagtacagtttaaaagagttgatggattgatgcaaaaaaaaggaatacaggaaagggCctagttgatcaccacagaagccccctacctccattcattgccttttgatcacagatcaaacctaacatcccattttccatccatataagcattaaaagtccaattgttttccctgagttggaaataaggcatctgcaaacaaataaattttcttttagaaaaaccattaccagaagacagataatttaggctaatgtactgtgtgagaatgactgggaggcccaataagtataggcaaaattttgaggggatcagagccaaggagataattgatcatttgatttccattgaccttttttgtttggcatgtcaccaagaaatgaaagacacctgtttcaccattgggtccatattttcagatttacaggAaaaggtagaaacctagttattctaagtcaatattgacttacagtattgaccctgtgggaaaccaggattaatgcacaattcaggggtgtggttccacatgatccttggaaggtactaaacagtagtatatgccattggctgctgatagctttggtccgtatttcaagagaaaggaggaagacagcacggtgctcagccagcttgccAaggtcttgactgcaagacgtagataagtggatgtagatgggtgagagacaaaaggtctcgggaggtcggtggtaagcagaaggttttggtgcaacgttgctagtgatgtttcctttcactgcgagtgtttggtgagattgtaagtgtctgtaatctgtaatgaatgaagctcctttacaagacatggatgcccttttagttttctggaactcgtggtggaagttgttttgattgaaaggaaagagacatttgcataaagaataaagggagacaaaatgctagataagcacagaagttgtgtgggtagagctagaacattgtggctgtaacgtttagatggtgatggtgggcgtgcatatatatataaagaagaataaagaaagaaaaagaaaagtaccttgtgcaagagttgatatccaagtttgagcctgacatcttgaccccttttgagatcaagtatggtccatgctaactcgacggcagcagtccgggtggtctgctcatgagggtaggcagcattggcaagttaaggtaagtaaggtagtatactgtacaagtagaataaaagcaagtagagacagaccgggttgaagtatttgtcggcgaggaggcgtcccttgaggttgatcccgagcaaggcgttggaggggaaggggatgatagccttgctggcgcggagggtgtaggagaagttgtcccatgctagtggtagGTTGGTTGTTGCGGAAGTGGATGGCGAGGCCTAGGCCTAGATTGGCGGAGAGACGGGGATAGAAGTTCCTGAAGAGGAGGGCGAGATAGGTCGGGGCGCCGGTGGCGGCGTGGATCTCGCCGTGAGCCTTTCCTTCCGCCGCCGCCGTAGCACAAGGGAATATGAATGAATTATTAATCGATGGTGAAGAGAATGAATAGGGAGTGAGTAGGCGGGATATAGTATAGTACCTGGAGGAGCGCGTTGGAGGCGATGGGGAGCTTCTCCTTGGCGTGGATGCGGAGGCCcctcctgtgactttgactgcggacgtgacccgccgccgcgcagccgcagagaagtctccatgccgcagctagggtttgggtttgggtttaggatgccgccgcgagccaagacgacggacggccggccagtggatgaggggggaagtgaccgtcgttactcactcggatcggatcagatcagatcagactagatgggccaaaactaaccataaatataggcctttctcatttcgatgggcctgaatggtccatatctcaggcgggctgggctatacaaattcacaagaagaaagagcagagacctcaatttatttatttattaagataatggaataacatttcggccttcgctcaacgaattacaactaattattataaagtccacacataaacaaacatatcatacacatcggccatgtataacgctccactcggcctgtgatcacacggctccatgttagagtcgagccgagctggtagccgaatgcgtggttccgcaggccagaaagcgcgcttgaagagggaatgcttgaagcgccgcgcctgggctcgggagacgcgaagccacggctcgaagactcgcgttcgaggagtcagagccccgcgtgtcgcctcgtccggtcagtccccacgtgcacctaccccaaatccctatatcgttgtggtcgtcggcgccactcatcgccatcattgtggtcgcgtcgccgctcgctagatccaccaccaccgctgctccctgccgccgctcgccagcaaatccgccgtcgttgtggcctgcgtcgccagatccggcgagcat
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| CDS seq | atgctcgccggatctggcgacgcaggccacaacgacggcggatttgctggcgagcggcggcagggagcagcggtggtggtggatctagcgagcggcgacgcgaccacaatgatggcgatgagtggcgccgacgaccacaacgatatagggatttgggctgcggcatggagacttctctgcggctgcgcggcggcgggtcacgtccgcagtcaaagtcacaggaggGGCCTCCGCATCCACGCCAAGGAGAAGCTCCCCATCGCCTCCAACGCGCTCCTCCAGgctatcatccccttcccctccaacgccttgctcgggatcaacctcaagggacgcctcctcgccgacaaatacttcaacccgaccacccggactgctgccgtcgagttagcatggaccatacttgatctcaaaaggggtcaagatgtcaggctcaaacttggatatcaactcttgcacaagatgccttatttccaactcagggaaaacaattggacttttaatgcttatatggatggaaaatgggatgttaggtttgatctgtga
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| Protein seq | MLAGSGDAGHNDGGFAGERRQGAAVVVDLASGDATTMMAMSGADDHNDIGIWAAAWRLLCGCAAAGHVRSQSHRRGLRIHAKEKLPIASNALLQAIIPFPSNALLGINLKGRLLADKYFNPTTRTAAVELAWTILDLKRGQDVRLKLGYQLLHKMPYFQLRENNWTFNAYMDGKWDVRFDL |
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| Function | Outer envelope pore protein 21, chloroplastic [UniProtKB/Swiss-Prot:B8AFI8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0039430 | OsLima_02g0039430.01 | Chr02 | 37698614 | 37702220 | - | NAM | ||
| CDS seq | atgctcgccggatctggcgacgcaggccacaacgacggcggatttgctggcgagcggcggcagggagcagcggtggtggtggatctagcgagcggcgacgcgaccacaatgatggcgatgagtggcgccgacgaccacaacgatatagggatttgggctgcggcatggagacttctctgcggctgcgcggcggcgggtcacgtccgcagtcaaagtcacaggaggGGCCTCCGCATCCACGCCAAGGAGAAGCTCCCCATCGCCTCCAACGCGCTCCTCCAGgctatcatccccttcccctccaacgccttgctcgggatcaacctcaagggacgcctcctcgccgacaaatacttcaacccgaccacccggactgctgccgtcgagttagcatggaccatacttgatctcaaaaggggtcaagatgtcaggctcaaacttggatatcaactcttgcacaagatgccttatttccaactcagggaaaacaattggacttttaatgcttatatggatggaaaatgggatgttaggtttgatctgtga
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| Protein seq | MLAGSGDAGHNDGGFAGERRQGAAVVVDLASGDATTMMAMSGADDHNDIGIWAAAWRLLCGCAAAGHVRSQSHRRGLRIHAKEKLPIASNALLQAIIPFPSNALLGINLKGRLLADKYFNPTTRTAAVELAWTILDLKRGQDVRLKLGYQLLHKMPYFQLRENNWTFNAYMDGKWDVRFDL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0039430 | OsLima_02g0039430.02 | Chr02 | 37699639 | 37702220 | - | NAM | ||
| CDS seq | atgctcgccggatctggcgacgcaggccacaacgacggcggatttgctggcgagcggcggcagggagcagcggtggtggtggatctagcgagcggcgacgcgaccacaatgatggcgatgagtggcgccgacgaccacaacgatatagggatttgggctgcggcatggagacttctctgcggctgcgcggcggcgggtcacgtccgcagtcaaagtcacaggaggGGCCTCCGCATCCACGCCAAGGAGAAGCTCCCCATCGCCTCCAACGCGCTCCTCCAGgctatcatccccttcccctccaacgccttgctcgggatcaacctcaagggacgcctcctcgccgacaaatacttcaacccgaccacccggactgctgccgtcgagttagcatggaccatacttgatctcaaaaggggtcaagatgtcaggctcaaacttggatatcaactcttgcacaagatgccttatttccaactcagggaaaacaattggacttttaatgcttatatggatggaaaatgggatgttaggtttgatctgtga
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| Protein seq | MLAGSGDAGHNDGGFAGERRQGAAVVVDLASGDATTMMAMSGADDHNDIGIWAAAWRLLCGCAAAGHVRSQSHRRGLRIHAKEKLPIASNALLQAIIPFPSNALLGINLKGRLLADKYFNPTTRTAAVELAWTILDLKRGQDVRLKLGYQLLHKMPYFQLRENNWTFNAYMDGKWDVRFDL |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0039430 | OsLima_02g0039430.03 | Chr02 | 37699685 | 37701571 | - | IsoSeq | ||
| CDS seq | tcacttcccccctcatccactggccggccgtccgtcgtcttggctcgcggcggcatcctaaacccaaacccaaaccctagctgcggcatggagacttctctgcggctgcgcggcggcgggtcacgtccgcagtcaaagtcacaggaggGGCCTCCGCATCCACGCCAAGGAGAAGCTCCCCATCGCCTCCAACGCGCTCCTCCAGGCTCACGGCGAGATCCACGCCGCCACCGGCGCCCCGACCTATCTCGCCCTCCTCTTCAGGAACTTCTATCCCCGTCTCTCCGCCAATCTAGGCCTAGGCCTCGCCATCCACTTCCGCAACAACCAACctac
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| Protein seq | SLPPSSTGRPSVVLARGGILNPNPNPSCGMETSLRLRGGGSRPQSKSQEGPPHPRQGEAPHRLQRAPPGSRRDPRRHRRPDLSRPPLQELLSPSLRQSRPRPRHPLPQQPTY |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 37701086 | 37701365 | - | OsLima_02g0039430.03 | OsLima_02g0039430.02,OsLima_02g0039430.03,OsLima_02g0039430.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.359471 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0832200 | RBH | 6.207397 | 4.357715 | 9.081404 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g58550 | RBH | 3.959630 | 2.936830 | 2.471263 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0832200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0039980 | RBH | 2.070297 | 5.692268 | 11.323985 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0040000 | RBH | 0.683644 | 2.689373 | 2.763348 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0039920 | RBH | 7.284627 | 5.800395 | 8.288253 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0039540 | RBH | 0.764565 | 0.420363 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0039450 | RBH | 12.941802 | 7.382868 | 8.712294 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0583900 | SBH | 4.315527 | 7.488172 | 5.4683985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0039150 | RBH | 0.748211 | 0.700319 | 0.775557 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0615900 | SBH | 4.870665 | 8.193341 | 6.805149 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0039350 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0039500 | RBH | 0.000000 | 13.256637 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0039500 | RBH | 1.294165 | 0.938880 | 1.703657 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0039140 | RBH | 0.600863 | 4.394723 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G039960 | RBH | 1.356438 | 3.171917 | 5.266650 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0039740 | RBH | 0.0 | 0.0 | 2.295072 |
