Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0036560 | OGI:02095260 | 14/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:35774673-35776581 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atggcatcttcctccggcgaatcgccgggttttcaggaggcctcgccgcgccgcgcatcctcctcgtcggacgcgacgccttctccgacaaccactaggtgagtcgccgctgttttttccccttaatctcaggagggagttggggttttggtagtgcgtgcgggttgcggcggcggggatcgcgagagggtgggggggggggggggggagtcggcgattgatttagggttcttaggctatcagcgttactgcctactgcacccgtcaagtatgattcccgtataaccgtattagttacgcatgtgacatcatttcaatctagtatgaactacctgtactagtacccatcaagcaaaagagtaccaagagttagctttttcgctggctataactaattcataatagagattgtggtaacttttatggcagttcttccaggctatctgtgggcttcatcaggactactgtaaaatggtccagcgaaatttcgctttatgtcaggttatcagggcttctttgagactgtaatttggtcatgagaaattcgctttatgtcaggttggatgctgcaaattatcgaccaggacattcattgtccctatctgttgcttgttgtctgcttagccgtgattttttaggttgtcaatgatgataactggagtatcactgaaggatgatggtaaagatcgttggagtgtcatgtacaggcccttgcagacatttcggtaaggtcctcctgttgctgaaaagaaactgtctgctcatgttattatctccctagtacttcgtatctgttggaaacttagactagggaagacctgcatacttataaataaaactaataattctgcattggtttgttggaatagcaaaagctgcagtgctccattccattattgcctttcagcctgttcataatatcccacaacaacgatcattaatgttgatgataccataggtgctcaaattgactaacaaagtcttccttttctagaaagggaagaactcctagaatataaaaaaatggcatgtttacctgtatgttgaatcaagttgtatttttctaccacagaatacgagcactcttaagattcagttaactatgccctggtttcagactgtcagttgagttcttcaagaaaattcctcaaagtaacatccaataaatttaccgaaaaaaaacaaggtaattgctatcggtccataactaaggtagttttggatttaagcttcaatagccacctcacatgatctttcgatctctgatggaaaatatgagagcacatcaggacattttgctatcatatttgatgtatgaaataaagcttactctgacgtatccatacgactgttcatttaccagtcttgcgcgagcatcacatcccttgacaattgaagcactcgcgatctctactttttgttacttatttgccccctttctgaagaaacaagatgggcgaaatggtttacgagatgactaaaccttcctgcaacgattacctctcttctgcagacagtgagcaggtaggcaggttaatctattctctcctgacttttacagtacttgccatttccggtccatttccaaagatatagccgcagttacatactctgtctggacacattgaagtctagcagatatgcttatcatctcctgttatttatggccctggattgtactgcatcaattattaggctaggctatacatcagcacacgttcgtgctttcttttgtagggtttgcaatagtactactgtttgacattaatttatgtttcttagtagtatatagcatgcaatgaagaacaagctgtacaaattgattcatttgactaatttcatatgtaaaattttgcaggattttgacatgaaacaaatcaagtttcgaggggaatatggaaatgtctaa
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| CDS seq | atggcatcttcctccggcgaatcgccgggttttcaggaggcctcgccgcgccgcgcatcctcctcgtcggacgcgacgccttctccgacaaccactagttcttccaggctatctgtgggcttcatcaggactactgtaaaatggtccagcgaaatttcgctttatgtcaggttgtcaatgatgataactggagtatcactgaaggatgatggtaaagatcgttggagtgtcatgtacaggcccttgcagacatttcgaaacaagatgggcgaaatggtttacgagatgactaaaccttcctgcaacgattacctctcttctgcagacagtgagcaggattttgacatgaaacaaatcaagtttcgaggggaatatggaaatgtctaa |
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| Protein seq | MASSSGESPGFQEASPRRASSSSDATPSPTTTSSSRLSVGFIRTTVKWSSEISLYVRLSMMITGVSLKDDGKDRWSVMYRPLQTFRNKMGEMVYEMTKPSCNDYLSSADSEQDFDMKQIKFRGEYGNV |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0036560 | OsLima_02g0036560.01 | Chr02 | 35774673 | 35776581 | + | NAM | ||
| CDS seq | atggcatcttcctccggcgaatcgccgggttttcaggaggcctcgccgcgccgcgcatcctcctcgtcggacgcgacgccttctccgacaaccactagttcttccaggctatctgtgggcttcatcaggactactgtaaaatggtccagcgaaatttcgctttatgtcaggttgtcaatgatgataactggagtatcactgaaggatgatggtaaagatcgttggagtgtcatgtacaggcccttgcagacatttcgaaacaagatgggcgaaatggtttacgagatgactaaaccttcctgcaacgattacctctcttctgcagacagtgagcaggattttgacatgaaacaaatcaagtttcgaggggaatatggaaatgtctaa
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| Protein seq | MASSSGESPGFQEASPRRASSSSDATPSPTTTSSSRLSVGFIRTTVKWSSEISLYVRLSMMITGVSLKDDGKDRWSVMYRPLQTFRNKMGEMVYEMTKPSCNDYLSSADSEQDFDMKQIKFRGEYGNV |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036770 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036880 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036700 | RBH | 0.0 | 2.195060 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036340 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036520 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0553300 | SBH | 5.597107 | 12.0803415 | 4.0724625 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036310 | RBH | 0.0 | 0.0 | 0.160249 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0583800 | SBH | 6.1551335 | 9.012251 | 23.348189 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036390 | RBH | 0.262673 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036620 | RBH | 1.647654 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036590 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036210 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036830 | RBH | 0.325942 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036600 | RBH | 0.0 | 0.0 | 1.040560 |
