Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0036470 | OGI:02095120 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:35724469-35728296 | ||||||||
| Gene Symbol | C3H18, OsC3H18 | ||||||||||
| DNA seq | ggagcatgatcaattgtatctgatcatcactttcgaacgggaccataataacacacacatcatcgtcagcttctggcagaataggtaccaaaatgacaatagggagcataagtttgtgagttcagaactcgaaacaatatggtcctgaacttctggcggacaaactagatatcacatcctatattttccctacaacagagctcctaaaacattacagccacagatcacactgtataaggcatgaaagaacaagcaatctgaagtcgcatgccacgacaaccttcaggtatcaaaatggatattgattgactggcagatgctaattgatactgcatcgaaaattgacattagaattttaaccatttcttctctttCtcctttctagcaaccgcgttggttgccgaagcatgcgttgCTtcagcatcagctagagcttttcgggtttgtttcaatttctttgaagctgcttcgtagaatgacttgtccttgcggtttcgcttcatcaTttcctccagcttctcaacacggctcctcagttctttcacttcgtcatcgtatgcaagcaaggatcttctgtcttccttcttggcatgtccatttgcctcaccggatgaatcctttttagatttcacggctgaaccttctgcaacatcttgacccactagttggCtattgataaagctgaagacagacctctcttcttcTtcagctttagcagcccttgcctgttcagcaaacttcttctcacgctttcttttcccaccccgactgcgTttttttccagggcctacactatcattaacctcacttgcagccacagcatgatcaagagattgctttgggggtagtaccttaactgggattggatcaagcatgccttgtccagaaacacctagacccattccctctcggtaccccatttttgccatcattttggaggcaacgcccctggtatggtgctcccactttgcaaagatcgcagtctctgtctgaacaccacttaaatttttggattccaaaaggcctagaccctgatgaacagattcatcctcttgatctccatcctcactaaaatcagatccttcatcacTtgagcttccttcaccatcttcatcgctctcatcagcatattctgagattgaaagagaatcactgggaagccttgcagagctcccgtcatcttgaaaaacaacctggccaactttcagatcgtcatcccatgactcaagttcagctcgtctccaaaggccagaatgatgcccagaagcagccagtatgctggatcctaccaaggattgctgccatctagtcggagtgaattgcttcagggacagaataggaattacaatacctgaggataaTttttggattagtcacacatgatactttatgtgcaaggggcagaaccaactgggacatcttatatgtgtaggaaaacacaaagatataaatccgtgaaaatcaatacaatattcacaaaaaatgcaacatctgaaggagcaatccatcatatgaagttcacaccattttgtggtgtcatcattgcttcaggtgaaaggcaacggaacaagagatcaatggtttgaaggggtttaatccttagaagggtgcaaaataagcaTttacataccatgggacaagcggcagttactaccaaaccgacatcgttgctggagaaaaaacttgcacatctgcactatgggcagattgattagttaatttgttggtaacaacgaaccttatgttctggacattacattccattaaccaacagaaaatatggttgatggtgaagggtacccacctgtgacctgttaacattttccccgtcccatttattcatgaatttactgtggtggtgcgatgcaagaggatagagggacacactcaggctttgctacaaggtttatttgggagcagatggacatatggcttcattgcaaaataaaggactggtatatgcacaatgcacacatggttttaaagaaaagcaaatcatgtactgtcacattactttggagagaagTtcagcaactgctcaaacagaatagcctagaatcaatacagaaataacttgattatacaaccgctagaatgctgtatagctctgcagcccagcaaggacttgtattgcaaaagtaggaatttgtttcctaaagttattccgtcattccaaggacattcaacaaaataattgcacaggtcctatctcctatgtgctggagttataatatctcatgaaggagagaagttggaaaaacagtaaatactggcaaataaacacccatttcctaccggcggtaacatagcaagttacaaacataccagcacgtagagggttatgtttagggtttaccaggaaacatggagctactattcaaaggaaaaaataatggaaaaacgatagatcaagtggcgtgactcaccgacatgttttcagacgtaggagtcagaaatgagatccttgcatcacttgagccttcaagtcctataacacatccattataccagcgcccatccttatgcctgaatctacacttagatccaactgaaaattcctgtggctccaatggttctgactcaacatcatcgggtggatcaacagctacttcaggtgcttcagatgttggctcttggttaggaaatatctcatcaatttgctttactagtctagagcgtttcaaatggagaagtccctcctctgcatccttaattgcagcaagaagttcttcatggaccttcaaaacagtacatattgtaagttagcatttgcacaatagaagcatgaaatacataagtacagaactattgaagacaatggtataagggttgagattccccaaaaagaagctgactgctttctctgaatatttgttcgatatttttctctggagatattttggacaaggaaacctactatttggatattcacatctcaggaatccaaaatgcataagctaatcatctcacctacaggttacatcagtgagctatgatgtgaatatcactcaactcttgtcataccaaacttaaacatgttgagtcgatatctaatctaaacatactaaatactaatgtacaaaagttaccatccatcttcggctgattttgccaatgacatgatacatgagtcaactaaatctaaccctgtcaaaaatatccatggacaaatcacataataaaaacgtcatctcgacaaaatgcgcttgattttcttacagtgaccgaatcagacatatcaatcacaatccctccaagcactcttgttagttttattaggcaatccttattacatcgtagagctcactactagtaataacaggagacatactgcctgaacccagcatctacacgagagagataagaacaataatccgagcacgacccagtcacacaaccagtcctgcaaattctaacattccgagaggactgcccgtcgcatccccacaacttgggagtcaaattaggagcctagggctagccaaaccttcaacagccagcgcccgcgcgggacgaTttgaaattgagagctagttaaggcgaggcgaggtgacgcggatgcgtacctcgaggaggtcggcgttggaggggtcggcggcgagggcctcgtcgacggcggtgagggaggcccgctgctcctgtaggtggtgctccagctgcagctcgatcgacgccgcctcgtcctccccttcttcccccgccatgggtggtggtggatcgagagagagagagagagagagagagagagagagagagagaggacgcctcccgctccccctcttcttcttcttcctccgatgcgacggccagcgagccagcggctgctct
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| CDS seq | atggcgggggaagaaggggaggacgaggcggcgtcgatcgagctgcagctggagcaccacctacaggagcagcgggcctccctcaccgccgtcgacgaggccctcgccgccgacccctccaacgccgacctcctcgaggtccatgaagaacttcttgctgcaattaaggatgcagaggagggacttctccatttgaaacgctctagactagtaaagcaaattgatgagatatttcctaaccaagagccaacatctgaagcacctgaagtagctgttgatccacccgatgatgttgagtcagaaccattggagccacaggaattttcagttggatctaagtgtagattcaggcataaggatgggcgctggtataatggatgtgttataggacttgaaggctcaagtgatgcaaggatctcatttctgactcctacgtctgaaaacatgtcgatgtgcaagttttttctccagcaacgatgtcggtttggtagtaactgccgcttgtcccatggtattgtaattcctattctgtccctgaagcaattcactccgactagatggcagcaatccttggtaggatccagcatactggctgcttctgggcatcattctggcctttggagacgagctgaacttgagtcatgggatgacgatctgaaagttggccaggttgtttttcaagatgacgggagctctgcaaggcttcccagtgattctctttcaatctcagaatatgctgatgagagcgatgaagatggtgaaggaagctcaAgtgatgaaggatctgattttagtgaggatggagatcaagaggatgaatctgttcatcagggtctaggccttttggaatccaaaaatttaagtggtgttcagacagagactgcgatctttgcaaagtgggagcaccataccaggggcgttgcctccaaaatgatggcaaaaatggggtaccgagagggaatgggtctaggtgtttctggacaaggcatgcttgatccaatcccagttaaggtactacccccaaagcaatctcttgatcatgctgtggctgcaagtgaggttaatgatagtgtaggccctggaaaaaaAcgcagtcggggtgggaaaagaaagcgtgagaagaagtttgctgaacaggcaagggctgctaaagctgaAgaagaagagaggtctgtcttcagctttatcaataGccaactagtgggtcaagatgttgcagaaggttcagccgtgaaatctaaaaaggattcatccggtgaggcaaatggacatgccaagaaggaagacagaagatccttgcttgcatacgatgacgaagtgaaagaactgaggagccgtgttgagaagctggaggaaAtgatgaagcgaaaccgcaaggacaagtcattctacgaagcagcttcaaagaaattgaaacaaacccgaaaagctctagctgatgctgaAGcaacgcatgcttcggcaaccaacgcggttgctagaaaggaGaaagagaagaaatggttaaaattctaa
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| Protein seq | MAGEEGEDEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEEGLLHLKRSRLVKQIDEIFPNQEPTSEAPEVAVDPPDDVESEPLEPQEFSVGSKCRFRHKDGRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSLSISEYADESDEDGEGSSSDEGSDFSEDGDQEDESVHQGLGLLESKNLSGVQTETAIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGPGKKRSRGGKRKREKKFAEQARAAKAEEEERSVFSFINSQLVGQDVAEGSAVKSKKDSSGEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKSFYEAASKKLKQTRKALADAEATHASATNAVARKEKEKKWLKF |
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| Function | Zinc finger CCCH domain-containing protein 18 [UniProtKB/Swiss-Prot:Q6K687] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0036470 | OsLima_02g0036470.01 | Chr02 | 35724469 | 35728296 | - | NAM | ||
| CDS seq | atggcgggggaagaaggggaggacgaggcggcgtcgatcgagctgcagctggagcaccacctacaggagcagcgggcctccctcaccgccgtcgacgaggccctcgccgccgacccctccaacgccgacctcctcgaggtccatgaagaacttcttgctgcaattaaggatgcagaggagggacttctccatttgaaacgctctagactagtaaagcaaattgatgagatatttcctaaccaagagccaacatctgaagcacctgaagtagctgttgatccacccgatgatgttgagtcagaaccattggagccacaggaattttcagttggatctaagtgtagattcaggcataaggatgggcgctggtataatggatgtgttataggacttgaaggctcaagtgatgcaaggatctcatttctgactcctacgtctgaaaacatgtcgatgtgcaagttttttctccagcaacgatgtcggtttggtagtaactgccgcttgtcccatggtattgtaattcctattctgtccctgaagcaattcactccgactagatggcagcaatccttggtaggatccagcatactggctgcttctgggcatcattctggcctttggagacgagctgaacttgagtcatgggatgacgatctgaaagttggccaggttgtttttcaagatgacgggagctctgcaaggcttcccagtgattctctttcaatctcagaatatgctgatgagagcgatgaagatggtgaaggaagctcaAgtgatgaaggatctgattttagtgaggatggagatcaagaggatgaatctgttcatcagggtctaggccttttggaatccaaaaatttaagtggtgttcagacagagactgcgatctttgcaaagtgggagcaccataccaggggcgttgcctccaaaatgatggcaaaaatggggtaccgagagggaatgggtctaggtgtttctggacaaggcatgcttgatccaatcccagttaaggtactacccccaaagcaatctcttgatcatgctgtggctgcaagtgaggttaatgatagtgtaggccctggaaaaaaAcgcagtcggggtgggaaaagaaagcgtgagaagaagtttgctgaacaggcaagggctgctaaagctgaAgaagaagagaggtctgtcttcagctttatcaataGccaactagtgggtcaagatgttgcagaaggttcagccgtgaaatctaaaaaggattcatccggtgaggcaaatggacatgccaagaaggaagacagaagatccttgcttgcatacgatgacgaagtgaaagaactgaggagccgtgttgagaagctggaggaaAtgatgaagcgaaaccgcaaggacaagtcattctacgaagcagcttcaaagaaattgaaacaaacccgaaaagctctagctgatgctgaAGcaacgcatgcttcggcaaccaacgcggttgctagaaaggaGaaagagaagaaatggttaaaattctaa
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| Protein seq | MAGEEGEDEAASIELQLEHHLQEQRASLTAVDEALAADPSNADLLEVHEELLAAIKDAEEGLLHLKRSRLVKQIDEIFPNQEPTSEAPEVAVDPPDDVESEPLEPQEFSVGSKCRFRHKDGRWYNGCVIGLEGSSDARISFLTPTSENMSMCKFFLQQRCRFGSNCRLSHGIVIPILSLKQFTPTRWQQSLVGSSILAASGHHSGLWRRAELESWDDDLKVGQVVFQDDGSSARLPSDSLSISEYADESDEDGEGSSSDEGSDFSEDGDQEDESVHQGLGLLESKNLSGVQTETAIFAKWEHHTRGVASKMMAKMGYREGMGLGVSGQGMLDPIPVKVLPPKQSLDHAVAASEVNDSVGPGKKRSRGGKRKREKKFAEQARAAKAEEEERSVFSFINSQLVGQDVAEGSAVKSKKDSSGEANGHAKKEDRRSLLAYDDEVKELRSRVEKLEEMMKRNRKDKSFYEAASKKLKQTRKALADAEATHASATNAVARKEKEKKWLKF
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.135088 | 0.060980 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0793000 | RBH | 1.014109 | 0.256907 | 2.460672 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g55000 | RBH | 1.180401 | 0.417724 | 0.979001 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0793000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036680 | RBH | 0.467291 | 4.673183 | 3.945589 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036790 | RBH | 0.0 | 3.118852 | 2.380293 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036610 | RBH | 0.822551 | 5.423003 | 2.817546 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0036250 | RBH | 0.000000 | 0.057745 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036430 | RBH | 4.246486 | 10.250470 | 11.353229 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0552300 | RBH | 6.611515 | 10.4851285 | 8.529084 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0036220 | RBH | 0.000000 | 0.117510 | 1.046177 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0582700 | RBH | 6.3175375 | 7.8472655 | 19.0990855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0036300 | RBH | 0.268401 | 2.505781 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036530 | RBH | 3.505600 | 12.355143 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036500 | RBH | 0.502125 | 0.354330 | 0.684129 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0036120 | RBH | 0.261600 | 4.550494 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036740 | RBH | 0.076072 | 2.157757 | 1.213744 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036510 | RBH | 0.593180 | 0.578873 | 4.909041 |
