Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0036170 | OGI:02094420 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:35480509-35482377 | ||||||||
| Gene Symbol | SMG1, OsMKK4, MKK4, OsMKK4/SMG1, OsMAPKK4, MAPKK4, OsMEK4, MEK4, OsSMG1, SMG1/OsMEK6, OsMEK6, MEK6, LARGE11 | ||||||||||
| DNA seq | taaagagagcaattcatgatttcattcgatcattctcccctcaaaaccaccagagagaaaggatcaggattcaggaagaggaggaggaaaaaataaagttgatttggttcccatttcaagatttgcttgctccaaccatccatgatccatccaatccaatccaatccacccccccacaatttgcagaatccaagaagccagcacagcaaagcatcacaatgttgttttgtcaccatcttctcctcctcctcctgcaactggagcagatggacaccaccacctactactactactacttctactgctccaatgatgattttagaaaataaattaattaagaagaaattgctttcttaacaacccatattatatgatgatcatttggaagaacatgaacttaattggaagaagaagaagaaaaaaaagaagaagaagagattaaagaaaagttgaggaggggaaggggaggagaggagaggagcttaattccaggagcaacagcgacaagagaggggatgatgatgagggtaaatcactaaattgtggtggtggcttgaatacccaaaatggctaggaagagcactcctagatcccacgtctcaatgccaaaccaccgtccatccatggccgagccggatcaacgccggaatcccatcggaattcatcatgacggaggcggtgcgaggggctgcggctgcggctgctgctgctgctgtggcccggcgacgaaccgatgttggagaagctgcgccgccgatggccgccgcgccgggttcttctggaggcagcagctgatgaagctcttgaactccggcgaggcgttgggcggcggcgccggcgagtcggagtagcaaatcgcgcacatgagggcggcccagtctccctgcttgccgagattctccccgagggggaacctgcccatgtagaactcgagaatgctcaggccgaagctccagatgtcgccggcgtagccgtcgtaggcgccgtcgttgaggtcggtgttgatgcgctcggggctcatgtaggcgatggtcccgacggaggagttgcaggggtccatggtctggttgaggatgcggccgacgccgaagtcggcgatcttgacgcggcggccggagtcgatgaggaggttggatggcttgatgtcgcggtggacgatgtggcggcggtggaggtaggcgatcccggagagcacctggcgcgcgacgtcggcgaggaaggcctcggaggcgatgcggcggccctcgagggatcccccgtccatgtactcgagcaggatctggagctcgccggcctgctcgtacatgccgtggcaccgcacgacggccgggtgctcggcggtgcggaggatcgcgatctcgcgcgtgatctgccgccgcacggcgtcgtcgtggttcccgtagagcaccttgagcgcgtacggccgccccgtggggcggtgccgcaccatccacaccgtcccgcccgcgccgctcccgatgcggcggacgcgctccagctccgacagcggcggcggggccggcggcgcggagccgaccgaattcggcggggtgggcacgccgccgagcgaggacgacccggacgacgacgtcgacgacggcgccgacgacggcggcagcggcagcggcagcggcaccgcgagcgacgtgaggtcccgctgcggcagcggcagcgtgagatccggccggcgccgcgacctccccggcgtccccggctgctgctgctgctgctgctgcagccccgcccgcaagctcggcggcccgcccggtcgcatcgcgacggcggcgaggcgcggcgcggcgggttgattggctcgcgtcggcgtgtgcgttttctggtgggctcgcggcgtggagaggacgaggccga
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| CDS seq | atgcgaccgggcgggccgccgagcttgcgggcggggctgcagcagcagcagcagcagcagccggggacgccggggaggtcgcggcgccggccggatctcacgctgccgctgccgcagcgggacctcacgtcgctcgcggtgccgctgccgctgccgctgccgccgtcgtcggcgccgtcgtcgacgtcgtcgtccgggtcgtcctcgctcggcggcgtgcccaccccgccgaattcggtcggctccgcgccgccggccccgccgccgctgtcggagctggagcgcgtccgccgcatcgggagcggcgcgggcgggacggtgtggatggtgcggcaccgccccacggggcggccgtacgcgctcaaggtgctctacgggaaccacgacgacgccgtgcggcggcagatcacgcgcgagatcgcgatcctccgcaccgccgagcacccggccgtcgtgcggtgccacggcatgtacgagcaggccggcgagctccagatcctgctcgagtacatggacgggggatccctcgagggccgccgcatcgcctccgaggccttcctcgccgacgtcgcgcgccaggtgctctccgggatcgcctacctccaccgccgccacatcgtccaccgcgacatcaagccatccaacctcctcatcgactccggccgccgcgtcaagatcgccgacttcggcgtcggccgcatcctcaaccagaccatggacccctgcaactcctccgtcgggaccatcgcctacatgagccccgagcgcatcaacaccgacctcaacgacggcgcctacgacggctacgccggcgacatctggagcttcggcctgagcattctcgagttctacatgggcaggttccccctcggggagaatctcggcaagcagggagactgggccgccctcatgtgcgcgatttgctactccgactcgccggcgccgccgcccaacgcctcgccggagttcaagagcttcatcagctgctgcctccagaagaacccggcgcggcggccatcggcggcgcagcttctccaacatcggttcgtcgccgggccacagcagcagcagcagccgcagccgcagcccctcgcaccgcctccgtcatga
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| Protein seq | MRPGGPPSLRAGLQQQQQQQPGTPGRSRRRPDLTLPLPQRDLTSLAVPLPLPLPPSSAPSSTSSSGSSSLGGVPTPPNSVGSAPPAPPPLSELERVRRIGSGAGGTVWMVRHRPTGRPYALKVLYGNHDDAVRRQITREIAILRTAEHPAVVRCHGMYEQAGELQILLEYMDGGSLEGRRIASEAFLADVARQVLSGIAYLHRRHIVHRDIKPSNLLIDSGRRVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDLNDGAYDGYAGDIWSFGLSILEFYMGRFPLGENLGKQGDWAALMCAICYSDSPAPPPNASPEFKSFISCCLQKNPARRPSAAQLLQHRFVAGPQQQQQPQPQPLAPPPS |
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| Function | Mitogen-activated protein kinase kinase 4 [UniProtKB/Swiss-Prot:O80397] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0036170 | OsLima_02g0036170.01 | Chr02 | 35480509 | 35482377 | - | NAM | ||
| CDS seq | atgcgaccgggcgggccgccgagcttgcgggcggggctgcagcagcagcagcagcagcagccggggacgccggggaggtcgcggcgccggccggatctcacgctgccgctgccgcagcgggacctcacgtcgctcgcggtgccgctgccgctgccgctgccgccgtcgtcggcgccgtcgtcgacgtcgtcgtccgggtcgtcctcgctcggcggcgtgcccaccccgccgaattcggtcggctccgcgccgccggccccgccgccgctgtcggagctggagcgcgtccgccgcatcgggagcggcgcgggcgggacggtgtggatggtgcggcaccgccccacggggcggccgtacgcgctcaaggtgctctacgggaaccacgacgacgccgtgcggcggcagatcacgcgcgagatcgcgatcctccgcaccgccgagcacccggccgtcgtgcggtgccacggcatgtacgagcaggccggcgagctccagatcctgctcgagtacatggacgggggatccctcgagggccgccgcatcgcctccgaggccttcctcgccgacgtcgcgcgccaggtgctctccgggatcgcctacctccaccgccgccacatcgtccaccgcgacatcaagccatccaacctcctcatcgactccggccgccgcgtcaagatcgccgacttcggcgtcggccgcatcctcaaccagaccatggacccctgcaactcctccgtcgggaccatcgcctacatgagccccgagcgcatcaacaccgacctcaacgacggcgcctacgacggctacgccggcgacatctggagcttcggcctgagcattctcgagttctacatgggcaggttccccctcggggagaatctcggcaagcagggagactgggccgccctcatgtgcgcgatttgctactccgactcgccggcgccgccgcccaacgcctcgccggagttcaagagcttcatcagctgctgcctccagaagaacccggcgcggcggccatcggcggcgcagcttctccaacatcggttcgtcgccgggccacagcagcagcagcagccgcagccgcagcccctcgcaccgcctccgtcatga
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| Protein seq | MRPGGPPSLRAGLQQQQQQQPGTPGRSRRRPDLTLPLPQRDLTSLAVPLPLPLPPSSAPSSTSSSGSSSLGGVPTPPNSVGSAPPAPPPLSELERVRRIGSGAGGTVWMVRHRPTGRPYALKVLYGNHDDAVRRQITREIAILRTAEHPAVVRCHGMYEQAGELQILLEYMDGGSLEGRRIASEAFLADVARQVLSGIAYLHRRHIVHRDIKPSNLLIDSGRRVKIADFGVGRILNQTMDPCNSSVGTIAYMSPERINTDLNDGAYDGYAGDIWSFGLSILEFYMGRFPLGENLGKQGDWAALMCAICYSDSPAPPPNASPEFKSFISCCLQKNPARRPSAAQLLQHRFVAGPQQQQQPQPQPLAPPPS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.130025 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0787300 | RBH | 2.969954 | 2.193319 | 1.069437 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g54600 | RBH | 2.008241 | 1.475889 | 0.275147 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0787300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0036370 | RBH | 0.0 | 2.771268 | 2.705951 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0036470 | RBH | 0.0 | 3.978543 | 1.347002 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0036310 | RBH | 0.672731 | 1.188414 | 2.467009 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0035900 | RBH | 0.228936 | 0.177867 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0036100 | RBH | 1.687489 | 36.904015 | 3.039292 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0547300 | RBH | 3.432733 | 30.515401 | 28.2108195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0035910 | RBH | 0.271304 | 0.658563 | 0.523071 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0577900 | RBH | 2.7160035 | 17.063072 | 4.743519 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0006420 | RBH | 0.0 | 0.160832 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0035990 | RBH | 0.390846 | 3.250177 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0036220 | RBH | 2.670900 | 3.579509 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0036190 | RBH | 0.394625 | 0.693417 | 0.465591 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0035800 | RBH | 0.189901 | 4.408843 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G036430 | RBH | 0.064921 | 1.788854 | 0.884527 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0036180 | RBH | 1.010743 | 7.344978 | 1.670722 |
