Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0034850 | OGI:02091710 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:34357932-34361524 | ||||||||
| Gene Symbol | OsPBA1 | ||||||||||
| DNA seq | acatactgccaatacgagggggcaagccatatgcatcaaaaccacaaaaggaggcaaatcaaagtctaaatgatatttttgaacttccttaacgaaaagaaattacatacagcacaagaagcatcttgcactagataattgcgcacagctgaacataattctgcagtccagttcttcagtaaatctagtgaaagtcagatacagaagaaagttgcttaagggaggtgtatggctggagggcagattcattggaccatcggatcagggttcccagctgcaagtatgtccagcaacgagttctggggctccagctcttcatgccacagttgtagtttgtctccagggtgaaatttcctcgaaacaccatctgcgtttatctgcaagattatcatatccataagttcaagaatcattggtctttcagaaaagtaatagcattataagcaaagataacaagacatgcctcaacttaaaatttactttgccacatgctacacattttcagaaaaaggaagagctacaagaaaatgcaatcaaagcaaatagatgcccaacaaggacataagaaaatttgttactaatgcttccaatcatccaatgtcttgtctacaataccctaacacattttagtaaaagagtaaaacaggtctgaatgaagtataagggatatatcacactgaaatattatccatttttggcaagaaaaccagtccatggaagttaaaaaaggccaactttttcattttaagtttcatctgatactatattctatggccatcacagcaaacagcatgacaaatatagcatagaaatttacatgtttgtatgaagtcaactaaagcaatcagttccggtatctgatgtttcaaaatatctacaacaagggaacagacaatgacaataaggacgaaaaaagggagcacttacagtgacggtacgaacaacccctccactagcaccatcacgggctatagcaagggaaactaccttaaccacaaacttctgtaaagatgaagaggaaaattaagtaataagagatgtgatgcagccagcaatattatacagggaacactgaagtgatggaaaatgatctttgcactctatgaatctggacatataaataatttgtgatattttcattAaatcatggcaaaaatgctgacaaactatctcttattactcatggattacgactgtttgatatttagatgatgtacctcagcttcttcctgggacatgccctccttccattcgtggtcaagcaatccatagaggtaactagagcctgaacctgcaaaactcagaaatagcatctggtgtcaggcaaacagcaaacaggggcttgggaaaattttatagtcaatgattataacagggcagggttgcacaggacagtgttggtaaacaaaaaagaatgaggcaagctaattcaagacatcaacaaataaagaaagaaatgaatcttgctaactgcaaaaggttgcttctgctttgcttgaaaaaattaaactgctcaggtaagtttgaaaaaaaatatctcataactaattggcttatactattgaactgacaaattattcttgtacgatatgtagatatgttatatatagacacaaatgttggtgggaaatatgtttcccattagattactctgagcccaatgaagagacatttgccataatatatatacctccgattgcaaatggttgcctcagaattgttccaccaagggggactgagaaaatttggcctccctcatatttatcccatccaccaacaatcatgccagcttgcaacatgttctgaaaaataaaaaaaatggtAaaaaaaaccattgcgacaataaaACaacaacttaaaatcgtgtatcagagaaaccattgcgacaataaaacaataacttaaaaaatcgtgtatcagagaaagaatttcatctcatgtagtcatggagttattggatcgcagaatgctatagaaaatataccttgttctgataagccaacaacctaattaagttggctgcaactttcacggtagctggctgcccaagctgaattctgaaaatggagggaaaatttagcatgaaccgtcttgcacatcaaatgtttccagtaactagtagaacaatatatatgaagagttcattcaacttcttcctattcgcttcaaggggacaacttacgtgtgttggtggagaaaatagcgtacataatcggaaattacttgtgtatcagcagcctgtgagacagagagaaacaaatatttacatgtgaatactactggactcttggaaatgccttagctgataataattagaagccgactactaacaactcagaataaatgaatcaaagtaaaatattgacaatgagagtgcaacttatgagagggcaatgaatgactgggaaaaccgatcaagatgacatgacacagtataacaaaagaacatatataacttgatgaataggaagctcgtgatttcccaatatcttatggccacagtacaatgagacaacatgaaaaaggagtaaagtccctaatatagatacttacagatccagagcggcagatgtacacattgtcagttagctgagtaatcttgtccgacgcacggtttgccacatacattcctaagaattaataccagacaacaaagggtatattaaaggaaagtaacaaaaaccaacatagtacgtcaacataacatcgatttcagttggttcagaacatgcacatctaagataacaagtcagaacatcaaaatcatctaagaaagcttgttaatcatgtagacacgagacccaaggttctaaatttccaaaacagcaacatcacgctaaacaccaatcgtgtacacttttctgactcttcactcttcagggccaaacgagaactatacgaacagaaaaatacaactggaacaattggtgttgtttctagtttcctctaatgctacagtcacgattttttcacatatctgccatacaagttttagcacgcattctactcgtcacatacagatttaagcaggataaattagtggtaagaagcaattttccatcaacactacattacgtgatccactgtggacgctatatatatattacaactaataatctcataagtcacaaacctaaaacagtaaaacttgaatcaggatagcagaggctaacaatcactactcctattccccccatcccccgcgattttgcatcaaaattgggcccgACGCCACCGGCTCCACGTTAAACCCCAACCACATCAATGGAAGAGATCTCCCGCATCGGggaggtgtcgaggcataccggtgctggttctggaatcggcggcgaggacgacgccgccgtcgtagcagacgccgacgatggtggtccccatccggtgctccccggaggtgggattgtctcccgctgcggcggagggggcgcccatgagagaggcgtccatggctggccgggggcgggggcgagatcggcggtggcggaaaaccctagcttagctgcgcggcggcgagatgcgagtcgaggcgctcctttcagtcgcgcgagcgagaagaggccagacggcgagagagctgtgtatgttacggtttt
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| CDS seq | atggacgcctctctcatgggcgccccctccgccgcagcgggagacaatcccacctccggggagcaccggatggggaccaccatcgtcggcgtctgctacgacggcggcgtcgtcctcgccgccgattccagaaccagcaccggaatgtatgtggcaaaccgtgcgtcggacaagattactcagctaactgacaatgtgtacatctgccgctctggatctgctgctgatacacaagtaatttccgattatgtacgctattttctccaccaacacacaattcagcttgggcagccagctaccgtgaaagttgcagccaacttaattaggttgttggcttatcagaacaagaacatgttgcaagctggcatgattgttggtggatgggataaatatgagggaggccaaattttctcagtcccccttggtggaacaattctgaggcaaccatttgcaatcggaggttcaggctctagttacctctatggattgcttgaccacgaatggaaggagggcatgtcccaggaagaagctgagaagtttgtggttaaggtagtttcccttgctatagcccgtgatggtgctagtggaggggttgttcgtaccgtcactataaacgcagatggtgtttcgaggaaatttcaccctggagacaaactacaactgtggcatgaagagctggagccccagaactcgttgctggacatacttgcagctgggaaccctgatccgatggtccaatga
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| Protein seq | MDASLMGAPSAAAGDNPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGNPDPMVQ |
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| Function | Proteasome subunit beta type-6 [UniProtKB/Swiss-Prot:Q8LD27] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0034850 | OsLima_02g0034850.01 | Chr02 | 34357932 | 34361524 | - | NAM | ||
| CDS seq | atggacgcctctctcatgggcgccccctccgccgcagcgggagacaatcccacctccggggagcaccggatggggaccaccatcgtcggcgtctgctacgacggcggcgtcgtcctcgccgccgattccagaaccagcaccggaatgtatgtggcaaaccgtgcgtcggacaagattactcagctaactgacaatgtgtacatctgccgctctggatctgctgctgatacacaagtaatttccgattatgtacgctattttctccaccaacacacaattcagcttgggcagccagctaccgtgaaagttgcagccaacttaattaggttgttggcttatcagaacaagaacatgttgcaagctggcatgattgttggtggatgggataaatatgagggaggccaaattttctcagtcccccttggtggaacaattctgaggcaaccatttgcaatcggaggttcaggctctagttacctctatggattgcttgaccacgaatggaaggagggcatgtcccaggaagaagctgagaagtttgtggttaaggtagtttcccttgctatagcccgtgatggtgctagtggaggggttgttcgtaccgtcactataaacgcagatggtgtttcgaggaaatttcaccctggagacaaactacaactgtggcatgaagagctggagccccagaactcgttgctggacatacttgcagctgggaaccctgatccgatggtccaatga
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| Protein seq | MDASLMGAPSAAAGDNPTSGEHRMGTTIVGVCYDGGVVLAADSRTSTGMYVANRASDKITQLTDNVYICRSGSAADTQVISDYVRYFLHQHTIQLGQPATVKVAANLIRLLAYQNKNMLQAGMIVGGWDKYEGGQIFSVPLGGTILRQPFAIGGSGSSYLYGLLDHEWKEGMSQEEAEKFVVKVVSLAIARDGASGGVVRTVTINADGVSRKFHPGDKLQLWHEELEPQNSLLDILAAGNPDPMVQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.478846 | 0.456729 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0770000 | RBH | 5.307304 | 6.967266 | 18.544710 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g53060 | RBH | 2.843029 | 3.727381 | 3.738063 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0770000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0035130 | RBH | 0.583709 | 13.340784 | 4.663349 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0035220 | RBH | 0.320648 | 6.796467 | 2.846380 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0035100 | RBH | 2.944537 | 36.730141 | 21.835220 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0034650 | RBH | 0.229904 | 0.666476 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0034750 | RBH | 12.142889 | 89.367256 | 32.734787 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0531000 | RBH | 21.9326055 | 31.1593045 | 38.008213 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0034600 | RBH | 0.747598 | 3.532159 | 2.813420 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0560900 | RBH | 26.9763145 | 25.6491775 | 55.5242175 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0002830 | RBH | 0.110554 | 0.426225 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0034680 | RBH | 1.436918 | 52.072815 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034930 | RBH | 0.000000 | 61.965034 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0034880 | RBH | 1.307088 | 4.684112 | 4.194919 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0034470 | RBH | 0.758099 | 16.849236 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G035120 | RBH | 0.346830 | 17.851873 | 9.214710 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0034840 | RBH | 1.872097 | 47.577545 | 17.216743 |
