Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0034840 | OGI:02091700 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:34355935-34357516 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcatcccccatccaagcaatcgattacatggtcataatcatgccctgccatctcatgcatgagcaacccaagcatctgagatatctcctccgcctgtggatgcgaccgatcgccggagacgaactcgtgcacgtcgccgtcgatctccacggcgctgtagcccggcctcttcctcagcccccgcgccttcatcaggctccggaccttcccggcgccgtcccacttgccgacggcggcgtagatgttcgacagcagcacgtagttggcgtcgccgccggggtccagctcgagcaggtgctgcatcagctgctcggccatgccgTCCCCGTGCATCCGGCAGCCGGCGAGGAGGGCGCCGAGCACCACCTCGTTTGGCCGCATCGGCATGGgtggtcaccacccgcatcgcctcctcgagccgccccgaccggccgagcaggtcgaccacgcagccgtagtgctccatccgcgccgcgatgccgtactccgccctcatcaggtcgtagtatcttagcccctcgtcggtgaggccgccgtggctgcacgccgtgagcacgccggtgaacgttacggcgtccggcttgaacccctccctccgcatcgcctcgaagtgctcgacggcgtccgcgcaccggccgttggcggcgaacccaacgatcatcgagttccaggagaccaccgtccgcttcctcattccgctgaacacctgccgcgcgagctccacctgcccgcaccgcgcgtacatgtcgatgagcgagttggctatcctgacgttgcgctccagcccctgccggaccacgagccggtgcacccacatcccgagccccagcgcgccgacctcggcgcacgcggagatgacggctatcagcgtgacgtagtccggctcgacaccgtccagaagcatggcgcggaagcagttgatggcctcgtcgtggcgcccgttcttgacgcacccgtcgatgagagccgtccaggagaccttatccggcgccggcattccgtcgaacacctcgaacgcggcggcgacgaggccgttccgcatgaggccggagatcaccgtgttgtaggtgacggcggacctcacgggcatggcgtcgaacagctggagggcgaggtggggcaagcgggacgcgaagtagaagcgcacgaggcaggtggagaggaggaggtgggaggggaagagcttgagcacgcgggcgtggacggagagcgcgaGgcggcgggcgagcggggaggacggggagtcggcgcaggcggagaggacggtgagaagggtgacgtcgttggggacgggcgccgcgggggaggagagcatggcggagagcgcagcggccgccgcggggaggtcgccctgcttcgccgggcgcgcgatggcggacgtccatgaggcgacgtctcgcggcggccggcggcgaggtttaggggttgggttctgaggaggttggggaagggcaagggaaggaggggctacgacggccattaggtaaggtctatggctgagggctgaggcatttccccgcgggcacgttggcacggagcctttgctctcccctggtttcttcaggttttcttcagaattcat
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| CDS seq | atgaattctgaagaaaacctgaagaaaccaggggagagcaaaggctccgtgccaacgtgcccgcggggaaatgcctcagccctcagccatagaccttacctaatggccgtcgtagcccctccttcccttgcccttccccaacctcctcagaacccaacccctaaacctcgccgccggccgccgcgagacgtcgcctcatggacgtccgccatcgcgcgcccggcgaagcagggcgacctccccgcggcggccgctgcgctctccgccatgctctcctcccccgcggcgcccgtccccaacgacgtcacccttctcaccgtcctctccgcctgcgccgactccccgtcctccccgctcgcccgccgcCtcgcgctctccgtccacgcccgcgtgctcaagctcttcccctcccacctcctcctctccacctgcctcgtgcgcttctacttcgcgtcccgcttgccccacctcgccctccagctgttcgacgccatgcccgtgaggtccgccgtcacctacaacacggtgatctccggcctcatgcggaacggcctcgtcgccgccgcgttcgaggtgttcgacggaatgccggcgccggataaggtctcctggacggctctcatcgacgggtgcgtcaagaacgggcgccacgacgaggccatcaactgcttccgcgccatgcttctggacggtgtcgagccggactacgtcacgctgatagccgtcatctccgcgtgcgccgaggtcggcgcgctggggctcgggatgtgggtgcaccggctcgtggtccggcaggggctggagcgcaacgtcaggatagccaactcgctcatcgacatgtacgcgcggtgcgggcaggtggagctcgcgcggcaggtgttcagcggaatgaggaagcggacggtggtctcctggaactcgatgatcgttgggttcgccgccaacggccggtgcgcggacgccgtcgagcacttcgaggcgatgcggagggaggggttcaagccggacgccgtaacgttcaccggcgtgctcacggcgtgcagccacggcggcctcaccgacgaggggctaagatactacgacctgatgagggcggagtacggcatcgcggcgcggatggagcactacggctgcgtggtcgacctgctcggccggtcggggcggctcgaggaggcgatgcgggtgGTGGTGCTCGGCGCCCTCCTCGCCGGCTGCCGGATGCACGGGGAcggcatggccgagcagctgatgcagcacctgctcgagctggaccccggcggcgacgccaactacgtgctgctgtcgaacatctacgccgccgtcggcaagtgggacggcgccgggaaggtccggagcctgatgaaggcgcgggggctgaggaagaggccgggctacagcgccgtggagatcgacggcgacgtgcacgagttcgtctccggcgatcggtcgcatccacaggcggaggagatatctcagatgcttgggttgctcatgcatgagatggcagggcatgattatgaccatgtaatcgattgcttggatgggggatga
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| Protein seq | MNSEENLKKPGESKGSVPTCPRGNASALSHRPYLMAVVAPPSLALPQPPQNPTPKPRRRPPRDVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVVLGALLAGCRMHGDGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQMLGLLMHEMAGHDYDHVIDCLDGG |
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| Function | Pentatricopeptide repeat-containing protein At1g05750, chloroplastic [UniProtKB/Swiss-Prot:Q9MA50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0034840 | OsLima_02g0034840.01 | Chr02 | 34355935 | 34357516 | - | NAM | ||
| CDS seq | atgaattctgaagaaaacctgaagaaaccaggggagagcaaaggctccgtgccaacgtgcccgcggggaaatgcctcagccctcagccatagaccttacctaatggccgtcgtagcccctccttcccttgcccttccccaacctcctcagaacccaacccctaaacctcgccgccggccgccgcgagacgtcgcctcatggacgtccgccatcgcgcgcccggcgaagcagggcgacctccccgcggcggccgctgcgctctccgccatgctctcctcccccgcggcgcccgtccccaacgacgtcacccttctcaccgtcctctccgcctgcgccgactccccgtcctccccgctcgcccgccgcCtcgcgctctccgtccacgcccgcgtgctcaagctcttcccctcccacctcctcctctccacctgcctcgtgcgcttctacttcgcgtcccgcttgccccacctcgccctccagctgttcgacgccatgcccgtgaggtccgccgtcacctacaacacggtgatctccggcctcatgcggaacggcctcgtcgccgccgcgttcgaggtgttcgacggaatgccggcgccggataaggtctcctggacggctctcatcgacgggtgcgtcaagaacgggcgccacgacgaggccatcaactgcttccgcgccatgcttctggacggtgtcgagccggactacgtcacgctgatagccgtcatctccgcgtgcgccgaggtcggcgcgctggggctcgggatgtgggtgcaccggctcgtggtccggcaggggctggagcgcaacgtcaggatagccaactcgctcatcgacatgtacgcgcggtgcgggcaggtggagctcgcgcggcaggtgttcagcggaatgaggaagcggacggtggtctcctggaactcgatgatcgttgggttcgccgccaacggccggtgcgcggacgccgtcgagcacttcgaggcgatgcggagggaggggttcaagccggacgccgtaacgttcaccggcgtgctcacggcgtgcagccacggcggcctcaccgacgaggggctaagatactacgacctgatgagggcggagtacggcatcgcggcgcggatggagcactacggctgcgtggtcgacctgctcggccggtcggggcggctcgaggaggcgatgcgggtgGTGGTGCTCGGCGCCCTCCTCGCCGGCTGCCGGATGCACGGGGAcggcatggccgagcagctgatgcagcacctgctcgagctggaccccggcggcgacgccaactacgtgctgctgtcgaacatctacgccgccgtcggcaagtgggacggcgccgggaaggtccggagcctgatgaaggcgcgggggctgaggaagaggccgggctacagcgccgtggagatcgacggcgacgtgcacgagttcgtctccggcgatcggtcgcatccacaggcggaggagatatctcagatgcttgggttgctcatgcatgagatggcagggcatgattatgaccatgtaatcgattgcttggatgggggatga
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| Protein seq | MNSEENLKKPGESKGSVPTCPRGNASALSHRPYLMAVVAPPSLALPQPPQNPTPKPRRRPPRDVASWTSAIARPAKQGDLPAAAAALSAMLSSPAAPVPNDVTLLTVLSACADSPSSPLARRLALSVHARVLKLFPSHLLLSTCLVRFYFASRLPHLALQLFDAMPVRSAVTYNTVISGLMRNGLVAAAFEVFDGMPAPDKVSWTALIDGCVKNGRHDEAINCFRAMLLDGVEPDYVTLIAVISACAEVGALGLGMWVHRLVVRQGLERNVRIANSLIDMYARCGQVELARQVFSGMRKRTVVSWNSMIVGFAANGRCADAVEHFEAMRREGFKPDAVTFTGVLTACSHGGLTDEGLRYYDLMRAEYGIAARMEHYGCVVDLLGRSGRLEEAMRVVVLGALLAGCRMHGDGMAEQLMQHLLELDPGGDANYVLLSNIYAAVGKWDGAGKVRSLMKARGLRKRPGYSAVEIDGDVHEFVSGDRSHPQAEEISQMLGLLMHEMAGHDYDHVIDCLDGG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0769900 | RBH | 0.759183 | 1.238924 | 0.454453 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g53050 | RBH | 0.428211 | 0.729945 | 0.199528 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0769900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0035130 | SBH | 0.583709 | 13.340784 | 4.663349 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0035220 | SBH | 0.320648 | 6.796467 | 2.846380 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0035090 | RBH | 0.000000 | 0.000000 | 1.013246 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0034650 | SBH | 0.229904 | 0.666476 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0034740 | RBH | 0.973814 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0530900 | RBH | 1.5262565 | 12.645588 | 3.188894 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0034590 | RBH | 0.182440 | 0.000000 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0560800 | RBH | 1.3143205 | 15.593918 | 4.5799485 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008960 | RBH | 0.285692 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0034670 | RBH | 0.025547 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0034920 | RBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0034870 | RBH | 0.0 | 0.030442 | 0.145335 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0034460 | RBH | 0.0 | 0.046380 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G035110 | RBH | 0.098980 | 0.000000 | 0.223275 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0034830 | RBH | 0.600060 | 2.272494 | 0.986131 |
