Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0033710 | OGI:02089570 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:33583219-33585958 | ||||||||
| Gene Symbol | TPP4, OsTPP4, OsTPP7 | ||||||||||
| DNA seq | cctctcaaactctcggagaagcgagcacacacactcactccctgtctcctcctcctcctcctCccttgaggctgttcgtctcgacgagtgcttggctttgtgtttgtggtgtgtgatcatgacgaaccaggacgtggtggtttcggagatgggcatcgcggcaggcgcggcgctgccgggaggaccggccggcccggcgggcggcctcttcgcgtgccgcagcgcggccgcgtcgatgaggcagacgtacctcgacctcgccgcggcggcggtggcggcgcgctccgcgagctgcaccagctgggccgacgccatgcgcgcctcctcccccacccgctcgtcccgctccgcctccgacgtcgacgagttcaccgcctgggtggtgagtgttgtagctagctagctagctctccccttagcttgcttgtcctctccttctcgcggcgtttctcgcgctcggtgcccagcccccggctattgcctttctggagtggtgtctcaacctttctctgtgtttcttggtggttcgaacagaggaagcacccgtcggcgcttagcaagttcgaggagatcgccgccaagtccagggggaagaagatcgtaatgttcatggactacgacggcacgctctctcccatcgtcgccgaccccgacacggcctacatgagcgacgcggtgagccaccaatccatgcatcgtgccgcgatctgttccggccacctctcccatctcttctcttttgctgatgacgctctctttccatggcggtgcgcgcgcgtgcgcagatgagggcggcggtgcgcgaagtcgccaagaccttcccgacggcgatcgtcagcgggcggtgccgcgacaaggtacattgccggagccactcctctcgccgtcccagacaccgtgacactctcgcgcgtgtattctgattcctctttgcccttcaggttcgcaacttcgtcggcctctccgacctctactacgccggcagccatggcatggacatcaagggaccaagctccaacgtatgctcgctgcacctcttcatccaatcatctcctcattcccagctcactctcgctaattaatcttcttcttctcccatgacaatctgcagccggagtctgccctttgccagccagcaagcgagttcctccccatgatcgacgaggtactaacctgcctcgctaatgaggattaattagtagctggacacttgtcgatttgtgattaacccgcaccgattactcgagacccatagatattaatggtggtgaaatattcacattttgtcaggtgtacaagacgctggtggaaaagacgaaatctacacctggagccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaaggtaggcaggactcactctatcttgggataccaacacaacagcttcacttaattacactgctttataataacgggcagctgcatcatgtgcggccataatttatccacacccatcgtctcaagtctgaaccattactgctctcttgcagagatggaatgctttgggggagcaggtcaaggccgtgatcaaggaatacccaaagttgaagctcactcaaggaaggaaggtaggcatgcataatcttgttaatctctaatgaacttaccaagtaattacccagaaaatcaaatcagttagagatacctagtgaggatctattttaacgaagattgcaactttgtttttgtcttttttttaggttttggagatcaggccgagcattaagtgggacaagggcaaggctctggagttcttgcttgaatcgctgggtatgtacgaacatctggacattttgtcttttctccaccttctatgagaccatgactcttgctatctttttaattaacctgttcgtgtcagcgtcgtcacggtcgctttcgtttcggttttatttcacttgcgttccacaccactgtcgtaaaaaaatcggctgatgacactttgcccctattcgctgttcctccccaggattcgccaactgcggcgacgtcctgccggtgtacatcggtgacgaccgcaccgacgaggacgccttcaaggtaaacatcacatcagtttaacaagaacacaacataaatgcatgcatctaatcatcactttaccgattaattcatgcttgcctcggtgattccgactggtgtttgttttacacacatgcaattaacttggtcaaaaccttttgcctcgctatgttgaaaccaggtgttgagaaagagaggtcagggcctgggaatcctagtctccaagtgccccaaggacaccaacgcctcctactctctccaggacccaacagaggtaaacccagctcagacaagaacatgtccaaatattttacctttttgtacgtatacacacgagcacagcacgtacagaatatataaaacgtttttgacccgtttctgcaggtgatggagttcttgctcaggctggtggagtggaagcggaagtcgtcgtcgtcgtcgttgatgattcgtccgagagtgtagcggcgacacggtgtagaggccgtaagaaactgaaactaagatggtcaatcatgcgaacatgcgaacataccccaccaacaccacgtactacccccattttttttccgatgatttctgtggttggcctctgcgacggactcgtggtggttacacgctagctgttcgattccgtcccctgtgccgccgaggaaaaggagaccacc
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| CDS seq | atgacgaaccaggacgtggtggtttcggagatgggcatcgcggcaggcgcggcgctgccgggaggaccggccggcccggcgggcggcctcttcgcgtgccgcagcgcggccgcgtcgatgaggcagacgtacctcgacctcgccgcggcggcggtggcggcgcgctccgcgagctgcaccagctgggccgacgccatgcgcgcctcctcccccacccgctcgtcccgctccgcctccgacgtcgacgagttcaccgcctgggtgaggaagcacccgtcggcgcttagcaagttcgaggagatcgccgccaagtccagggggaagaagatcgtaatgttcatggactacgacggcacgctctctcccatcgtcgccgaccccgacacggcctacatgagcgacgcgatgagggcggcggtgcgcgaagtcgccaagaccttcccgacggcgatcgtcagcgggcggtgccgcgacaaggttcgcaacttcgtcggcctctccgacctctactacgccggcagccatggcatggacatcaagggaccaagctccaacccggagtctgccctttgccagccagcaagcgagttcctccccatgatcgacgaggtgtacaagacgctggtggaaaagacgaaatctacacctggagccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaagagatggaatgctttgggggagcaggtcaaggccgtgatcaaggaatacccaaagttgaagctcactcaaggaaggaaggttttggagatcaggccgagcattaagtgggacaagggcaaggctctggagttcttgcttgaatcgctgggattcgccaactgcggcgacgtcctgccggtgtacatcggtgacgaccgcaccgacgaggacgccttcaaggtgttgagaaagagaggtcagggcctgggaatcctagtctccaagtgccccaaggacaccaacgcctcctactctctccaggacccaacagaggtgatggagttcttgctcaggctggtggagtggaagcggaagtcgtcgtcgtcgtcgttgatgattcgtccgagagtgtag
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| Protein seq | MTNQDVVVSEMGIAAGAALPGGPAGPAGGLFACRSAAASMRQTYLDLAAAAVAARSASCTSWADAMRASSPTRSSRSASDVDEFTAWVRKHPSALSKFEEIAAKSRGKKIVMFMDYDGTLSPIVADPDTAYMSDAMRAAVREVAKTFPTAIVSGRCRDKVRNFVGLSDLYYAGSHGMDIKGPSSNPESALCQPASEFLPMIDEVYKTLVEKTKSTPGAKVENNKFCLSVHFRCVDEKRWNALGEQVKAVIKEYPKLKLTQGRKVLEIRPSIKWDKGKALEFLLESLGFANCGDVLPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCPKDTNASYSLQDPTEVMEFLLRLVEWKRKSSSSSLMIRPRV |
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| Function | Probable trehalose-phosphate phosphatase 4 [UniProtKB/Swiss-Prot:Q6ZGP8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0033710 | OsLima_02g0033710.01 | Chr02 | 33583219 | 33585958 | + | NAM | ||
| CDS seq | atgacgaaccaggacgtggtggtttcggagatgggcatcgcggcaggcgcggcgctgccgggaggaccggccggcccggcgggcggcctcttcgcgtgccgcagcgcggccgcgtcgatgaggcagacgtacctcgacctcgccgcggcggcggtggcggcgcgctccgcgagctgcaccagctgggccgacgccatgcgcgcctcctcccccacccgctcgtcccgctccgcctccgacgtcgacgagttcaccgcctgggtgaggaagcacccgtcggcgcttagcaagttcgaggagatcgccgccaagtccagggggaagaagatcgtaatgttcatggactacgacggcacgctctctcccatcgtcgccgaccccgacacggcctacatgagcgacgcgatgagggcggcggtgcgcgaagtcgccaagaccttcccgacggcgatcgtcagcgggcggtgccgcgacaaggttcgcaacttcgtcggcctctccgacctctactacgccggcagccatggcatggacatcaagggaccaagctccaacccggagtctgccctttgccagccagcaagcgagttcctccccatgatcgacgaggtgtacaagacgctggtggaaaagacgaaatctacacctggagccaaggtggagaacaacaagttctgcctgtccgtccacttcagatgtgtagatgaaaagagatggaatgctttgggggagcaggtcaaggccgtgatcaaggaatacccaaagttgaagctcactcaaggaaggaaggttttggagatcaggccgagcattaagtgggacaagggcaaggctctggagttcttgcttgaatcgctgggattcgccaactgcggcgacgtcctgccggtgtacatcggtgacgaccgcaccgacgaggacgccttcaaggtgttgagaaagagaggtcagggcctgggaatcctagtctccaagtgccccaaggacaccaacgcctcctactctctccaggacccaacagaggtgatggagttcttgctcaggctggtggagtggaagcggaagtcgtcgtcgtcgtcgttgatgattcgtccgagagtgtag
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| Protein seq | MTNQDVVVSEMGIAAGAALPGGPAGPAGGLFACRSAAASMRQTYLDLAAAAVAARSASCTSWADAMRASSPTRSSRSASDVDEFTAWVRKHPSALSKFEEIAAKSRGKKIVMFMDYDGTLSPIVADPDTAYMSDAMRAAVREVAKTFPTAIVSGRCRDKVRNFVGLSDLYYAGSHGMDIKGPSSNPESALCQPASEFLPMIDEVYKTLVEKTKSTPGAKVENNKFCLSVHFRCVDEKRWNALGEQVKAVIKEYPKLKLTQGRKVLEIRPSIKWDKGKALEFLLESLGFANCGDVLPVYIGDDRTDEDAFKVLRKRGQGLGILVSKCPKDTNASYSLQDPTEVMEFLLRLVEWKRKSSSSSLMIRPRV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0753000 | RBH | 0.000000 | 0.0 | 2.908979 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g51680 | RBH | 0.000000 | 0.0 | 0.748828 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0753000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0034020 | RBH | 0.0 | 2.728673 | 4.214011 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0034100 | RBH | 0.0 | 0.0 | 1.924782 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0033990 | RBH | 0.0 | 3.879692 | 3.808579 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033570 | RBH | 0.0 | 0.041423 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0033640 | RBH | 0.0 | 1.818375 | 13.288625 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0517100 | RBH | 0.9827455 | 22.9321165 | 3.2518825 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0033450 | RBH | 0.0 | 0.480690 | 2.265265 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0547400 | RBH | 1.4471595 | 8.72523 | 6.561672 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0008430 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033530 | RBH | 0.0 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0033850 | RBH | 0.0 | 18.517763 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0033740 | RBH | 0.000000 | 2.035589 | 2.050637 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033340 | RBH | 0.0 | 8.999041 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G034020 | RBH | 0.0 | 0.000000 | 3.753589 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0033730 | RBH | 0.0 | 32.613117 | 5.461223 |
