Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0033450 | OGI:02088970 | 13/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:33391923-33395315 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgtcgacagggaacatgcttgcagatctctcttccgtcaatggctaccacgagggtcttcccatggtgcttgcccacattgccacctacgccgcgcttgctcttcccccaactgtcgacgcccggcaccatagctgccgaggccaagaagatctggaccatctggtcatctttggcgccatgaatccggccacttccgccaacgggtctgctgccatcatcgacccgccgtctcgcacggttcaatgggcatcatcacacgcctatgcttcatgtccttctttactagcaggttaaaaaatccttatggatttatttgctaatcatctttacctaatacatatctggtataattcttcgttgccttggttttattactatatttttaggtcatcaggtggagaagccatccatatgctaaataggtctcaagataggagtgagcagcaagttcggTtttcattgggccatactcctcatctgaacaaacaggtttacatagtttacatagttgttttacagcctataataggaaaaagaatattggatagcttgttattgtgaggtgatcttgtttgttgttggatgatattaattgattgattgttttattaggaattctcggcaggtgtgttgatttctattttgcttaattttgtttaattctgcagccatcatggcccagggagtataaagttgaatagagcggttgcgatgacggcagctcagctcaacaatggcactgggcgtgcactgggaggtatgcttaaaggagagtgttgtagcatttgcatttttggcagttaagtttgagcactggatacaaatcattgatcttctagaagtaacattttgattcctgcaaactaatgcggcacctctgtctcaacactgtcatcaggccagtctgctccccagtttggcactccttgtggtaagggaaacgaggagaaagaaatgaccgaccaacaggttgtgaaagacaccaacgacctgcatcacgcaaataaacaggtattattattttggttagtttggtttgttgtgcagatattaattaaggccaggggtaggggttgaagacttatggatgaatccggtaccgtaaccttcacatttgaccgttcattagtagctaaatggacagctaccatgcatctgatacatcaatctgtaggctaatgacatattttgagttatagcgatactttctttaaacaattgctatctttttatgtactgaaatttgcataatccttatgatgtgtttttctttaatcatatttatgtaattaatacatgtagaggataagaagagagatgattagcttctgcatttctgagatgtgaatatctaactaggtatccagatcctaagaaaaaatatcttcagagaatagtatcaagcaaatattcagagaaaacagtgggcccattttttttggggtatttcataccattaatcgtagcattcggcagttctgcagttatgtatactttgcacttctattgtgcaaatgttatgttacaatatatatgctgttctgaaggtccatgacgaaattcttgctgcaatcacggaaacagaggagggacctctccatttgaaatgctctaggctacataaaaaactgacctaatcatatgaaaccttaagatagtacatattattattagacaatatgttggtcttttcttgctaaacctgaattgttatattggtgcatagtggaattagtaagattggtgtgactaaggagatatatttgaagtgtatacatttttattaagtcaatagacaatgtttcagcctgcagtgatcgacatattcaggtgtcagtagagaggcacaacatttatttgcttactggattacttctagacaaggtttgcttcttgcttttctatgactgacatgttatagctccgctaaatgaagtattattacaattttagtggagcattatgatattagttatgctgatttaaaatgcggtaatctattgctttagacatgggaacatacatgatgaattgacctcttgttatagttttagtttcatcatgattttttagaaatatatataatatatgaatattcacaatgcaacatcctcagccttttcttctttggatatatcacactgagataaaagggaattattaatatgttagattgttctatcagtgttgatgtgaaacaaagttatcattggtattttatatcatggatttctattttctaatatccgtttcctatctaaccaaaggagggaacaacaatcggtgcatgatctctctacctgatttagacaggtaacactatcaaacacaacttgcatgggatttctatttttctgttggtcatgtgggttagtaatgaggcatgagaaaagtttttcagattttattactataaattattgttactctaacatccctactcatgttagatgatgttctgaaaaagattctagcctgtatagctttatgtgcaatgcctcttgaggatgctgcaggttgtgtattttctgaattatttgtagtaaataaccatacacacatggattcttctttatgtttcttcatgcaccattgaaactttgatgtgctagcagccagggagttgccattttcctttctacattctgatggaggtaaactcaacatatatgtctatgtgaaaccatgtcattaatatattttggcgtatttctgatataatacttaaaacaagtgcttatcagttttatttcgagggattaactgaatctggaaaagttttatttcgagggattaactgaatttggaaaatggaggacctagattttctaaagggtcatctgataatatatgttattgaacaagtgtgatctttctttatttttgctaatttattgataccttgccattttttaagttctatttcctgtaccaatttcctataatcaatgtagtttttttttatttacataagtctctcaaaggtattgtcaagcttctgaccatgctaacattgaggctgccttgtaacagtgtacctctcctcaaatatcagaaacatggttggaagagtccattctaaatggcatgatggccacaaagtttgtttgctccaaggccacaaatagtgtctcaaaatgtagtataaatttgtatgatcttctctttaaattctaaacacggtttttgacaactgacaagtatggataaaaaattcgatgcctaaaaatatgcaggagcctcaagtgatatctttagaagggatgagtttattgtaataaacatgaatatatgatgtaggcttagacattatttctagattgacattttaatttctatataatacatgattcatgagtttgaaatgtatatgtagttatttatattttg
More
|
||||||||||
| CDS seq | atgtcgacagggaacatgcttgcagatctctcttccgtcaatggctaccacgagggtcttcccatggtgcttgcccacattgccacctacgccgcgcttgctcttcccccaactgtcgacgcccggcaccatagctgccgaggccaagaagatctggaccatctggtcatctttggcgccatgaatccggccacttccgccaacggccatcatggcccagggagtataaagttgaatagagcggttgcgatgacggcagctcagctcaacaatggcactgggcgtgcactgggaggtccatga |
||||||||||
| Protein seq | MSTGNMLADLSSVNGYHEGLPMVLAHIATYAALALPPTVDARHHSCRGQEDLDHLVIFGAMNPATSANGHHGPGSIKLNRAVAMTAAQLNNGTGRALGGP |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0033450 | OsLima_02g0033450.01 | Chr02 | 33391923 | 33393480 | + | NAM | ||
| CDS seq | atgtcgacagggaacatgcttgcagatctctcttccgtcaatggctaccacgagggtcttcccatggtgcttgcccacattgccacctacgccgcgcttgctcttcccccaactgtcgacgcccggcaccatagctgccgaggccaagaagatctggaccatctggtcatctttggcgccatgaatccggccacttccgccaacggccatcatggcccagggagtataaagttgaatagagcggttgcgatgacggcagctcagctcaacaatggcactgggcgtgcactgggaggtccatga
More
|
|||||||
| Protein seq | MSTGNMLADLSSVNGYHEGLPMVLAHIATYAALALPPTVDARHHSCRGQEDLDHLVIFGAMNPATSANGHHGPGSIKLNRAVAMTAAQLNNGTGRALGGP |
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0033450 | OsLima_02g0033450.02 | Chr02 | 33393122 | 33395315 | + | IsoSeq | ||
| CDS seq | atgggatttctatttttctgttggtcatgtgggttagtaatgaggcatgagaaaagtttttcagattttattactataaattattgttactctaacatccctactcatgtt |
|||||||
| Protein seq | MGFLFFCWSCGLVMRHEKSFSDFITINYCYSNIPTHV |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.132158 | 0.055382 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0749000 | RBH | 1.251709 | 1.662643 | 1.412482 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g51390 | RBH | 0.826166 | 1.091442 | 0.354879 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0749000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0033810 | RBH | 0.0 | 0.0 | 1.116050 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0033700 | RBH | 0.000000 | 0.0 | 3.145585 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0033280 | RBH | 0.0 | 0.355571 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_08g0010760 | SBH | 0.000000 | 15.306273 | 4.272712 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0033190 | RBH | 0.000000 | 0.000000 | 0.591561 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0543600 | RBH | 1.1017605 | 6.474676 | 6.3899525 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_08g0010410 | RBH | 0.0 | 0.448042 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0033260 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0033590 | RBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0033470 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0033070 | RBH | 0.000000 | 6.890405 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G033740 | RBH | 0.284246 | 0.000000 | 1.392699 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0033460 | RBH | 2.057998 | 0.000000 | 2.524441 |
