Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0033120 | OGI:02088340 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:33110285-33118467 | ||||||||
| Gene Symbol | DSM1, OsDSM1, OsMAPKKK6, MAPKKK6 | ||||||||||
| DNA seq | aagtcggcttaaacaaatgccgttttgcccagtcggagatgagtcaatacctgcctaaagttgagttaccccttccgcctcagcgtcagtggccatgtcggatccacccacccaccaccagcaacagtgggcaataggccaatagctgctgctgcgacggcgacctcggcggcggcggcggcggcggcggcggtggcgacggcatgaagaacttcttcaggaagctccacatcggggaggggtcgggcgacggcgcctcctcgtctccccctccaccgccctcctcgaggaaggggagcggcggggtggggggtaatcatcacccgcacgccgagcagaggcagccatcggcgtcggcggtgtcgagctggcttgattccgtcccaggtcggcctcagccccctacgccgtcgacgccgtcggaggcggaggggtcgccgttctcgtcgtcggtagggtcgggggcgggggcgggggcgggggcggaggagaggaggcaatccgtggcggctgagaggaggagatcgcaggaggaggagtgggagaggaggcggtcgcaggaggaagaggccgtgagggagatgaggcggtcgcaggaggaggacgaggtggaggagcgagtgataagggagtcgtcggaggcggaggagaggaagcgggtcagggagaaggaggacgacgaccttgaggagttccagctgcagcttgtgcttgagatgagcgcgcgggacaatcctgaagagatggagattgaagttgccaagcagatcagcctgggcttctgcccgccccagagctctactgcagaggccctcgcggcccgatactgggttagccactctgattcatttccatcgctaattagctgtttccatggtgcaattctgatagtggaatagactccatgctgtgaaaccggttgactttacatctttgactggctgggcagtgattcagtgctggagttcatagctagtgcaattgcatcgattgggtgatttttggggttggtagcacgagcttagttgtactttctgtggtacattacattacatacaatgatcttctgcagtctgactgcctaattgctgaaacctagtgtctgtctgtcagataagttaaactttcttatcttgtgactaacatcacccccagtataattttcactgcttgtgtgggttctggagtatgattctagtatatcctttataagattgggccttacttttttgaagtaattgttatttgataatacaaagaaacacagctctattgtgtttttgaggaaaaaaaaactaaatgttatttgttgctattcagcaatgcattgtggccatatgtaaaagaggcctgttcagtaatgaattgtagccatacgtaaaagagaccatacattggtatgaatcgcacatttaatcaacatttttaaatagatgaagcattcctcatgtttctactcaacacactccaaagttctgtacattccttttttcttaacatggtccattttctggtgtctctcatatgatagaattgtttatgcctcacagaatttcaacgcccttggctatgatgacagaatatcagatgggttttatgatctctatgtgactgggaatggcccggcttcaataaccatgccctctcttaaagatttgcgagcgcagtcactatcacatagggtcaactgggaagctgtattggtacacagaggtgaagatcctgagcttatgaaacttgaccagacggctctaatcatgagccttgaactccgtgaatctaaaccttcagaatttgttggaaatgatttggttcagaaacttgctggcctagtagccagacacatgggtggaactttttttgattctgagggcatgttggtgaaataccagaaaatgatgagatacctgagaaccagtattggaagtgtagttgttcctcttggccaattaaaaattggtctggcacgtcatcgcgcactgctatttaaggttagttacttaataagacatattaagtatttaagattagtgtggctaatctccaagctatctttgttgctctagtcctgaactttattgacaacgagaatttgcccaacgtggacactgaacattgaatgccatctgttataatgctttctatatttttctctacttcaaattcagtgtataagttctatacattttctctttgccctaatacaatagaagggtgacccaattaccattataagacacattacacacaaatctatctatgatagcaattacttttcttaatggttacatgtaggttttggccgataacattggtatcccctgtcgactcctgaaaggaaggcagtacactggatcggacgatggggctttgaatattgtgaaatttgatgatggaaggtattgcatcctttacaacatgaacaggattgtgttggacaaataaacatgagatagcacaagtgtgttctgtcctgatagtattggactttctatcttcatgcattcacttttaagtgttggtgcactgaggattgaaagatgtaataagaacacatttcacttcataaccatctaaaccgtgctgcattttgcagggagttcattgttgatcttgtcgcagatcctggtacacttattccttcagatggtgctgttttgtctacagaatttgaagaaagttccttctcaaataatcatcattttaacaaagataatgacatcaggcagttgggatcttcaaatagtttatcgaattctgcatgtagttcttttgagtgtgagttacttgacagaagatctacatggatcaacgttggtccttctgatagtgatggagctacaacgagccagacaagtaaaaacaatcaacaaaatacactatcagattcattcgggattttatctgttagcacattcactagtgaaaataggcctattacaaatgaatcaagaagtacagacgacattgctgccgcaaagaacaaagaaagatcaagtgtaacaattaattcttcgtcaacttcaccttcaccttcttCcccagaagtaggcagtactccagctgtccggaggatgaaagtaaaggatatttcggagtacatgattaatgctgccaaagagaatccacaactagctcagaagatccatgaggttttacttgaaaatggagttgtagcaccacctgacttgttttcagaagattccatggaagagccaaaggacctcatcgtgtatgacaccaccctttttcaaagcaaggatgaaatgaaaaagaggatgaatgaacttgggtcgagggaatatgctgatcgtggtcatggtccattattgcctcatcatcctggacatgaactcccatcaaaagttcctcaccgggcacctctagactcacttaagccagTtTGAGGGTTTGGGCATTGACCACCCCCCTGACATCCAAGATAACACATCTTTTATTTCTCAGTATGAACCTTCTGCACCTCCCCAGGAAGCTTCATCGCAGCTTACAAAGCAATTGCCTGTTACGGCTGCTGCTGTTGCAACTGCTGCAGTGGTTGCGTCTTCAATGGTTGTTGCTGCTGCTAAATCAAACAATGATGTGAACTTTGATGTGCCTGTTGCAGCTGCTGCAACAGTCACTGCAGCTGCAGTTGTTGCCACAACTGCTGCTGTTAGCAAGCAATATGAACACTTGGAGCCTGGTAATCAGCTGCATAGTTTACCAAGTCCCTCCGAAGGGAATGAATCAATCGAGAAAAGTGCAGATGAGTTTTGGGATAAACAGAATTTTGAAATTGATCATGGTCAAGATAATACTTTGGATCAAGAAAAAGATTCAGCTGAAGTTCGCCAGGATGCTGAAAGAACCTCAGATAAGTCAAGCGGAACAGAGAGTGCAAAATCTGAAATCACTCTGGATGATGTTGCGGAGTTTGAAATCCAATGGggaagaaattactattggggaacgcattggtcttggtaaatttctttcaatttattcaaacggttgttttcttagtcatgctactgttccgttgactgtcagtaaaatcttattgtggttttctttctcttaaattgatccaaccttctgtgctccaggatcatttggagaagtttatagaggagagtggcatggaacagtaagtgtttcagtaaaaatatgctctcttacattttaatttgtcaacaagttccatgttattatctgaatgcaatcggcacatttgttaactgtttgatctctcaaggatgaaagatgtgaattattgttctctgagataacatacataatgttcatgccactgtcaactaTtgtaccgaatagaataactccctacTtttttttctaaaaaacttgattatattttataatgAaaaggttcagcTttaaagataaTacattgagaaaccactatagccatttgattagttttctgttgcccagtcttgtatcaaaatgttttcacctggaaagctacgtatgatttcttcgcagcagacttcaataTtttgtgaaaaaagtgttttaatatgtctaatttttgtattcagctgttttcattagtttgaagacccatcttttgttatgcaccatcttcttgaaagttctagcaaatcttatgtttaacagtgtatcaaaattgctttgtttataggaagttgctgtaaagaagtttctgcaacaagatatttcaagtgatgctctggaagaatttagaactgaggtataccatatactccataatttagttcaaatgaccaaatagtctgaagtacagatgttttggcttcttgcctgtgttcatatgtttgtgtgcatgctcatgtgttttattgtgcatgtttgcacttgcatcatgtttgcatattaacttcatgcacacaccatatgagccttatagtaatgtattaCTTttcatgtttaggtgcgaataatcaagaggttgcggcatccgaatgttgttctcttcatgggtgctattactcgtgtacccaatctttctattgtcaccgaatTTCttccaaggtatgtcttgttgttattggtgtaaatttttacatcacatttatgtttatttcatgtaggaaataggaacttaggatcatatactagttaatgttttgttcagaatttgatgcgttaaaaagataaacttcctgttttgtaattcgagctgactcagttgacctgtgtcatagtatcagacatattttggaacattcacctgcaaccccttaaagaacagtgcattaattgtggggatagttgctcactttttttaggaactctatattattaatcattcttgcccctttttttttctattggtcttgcagaggtagcttatttcggttaattcatcgtcccaacaaccagttggatgaaagaaagcgcttaagaatggcacttgatgtggtatgcatgatttgtgactctaaatctcaacttattgttaacacagttgctgataactgataagtgtggagaagccaaatattgtttactaagattccttgaatggtccctaggcacgtggtatgaattatctacataactgcacaccggtgatagtccatcgagatctgaagtctccaaacctactggttgacaagaattgggttgtgaaggtaatacacaagttgcacgatagcaatgaaattcattttccttcaatttctgttgcaaaccacttacgtttttgcaactaggtttgcgactttggtttatctaaaatgaagaacaagaccttcttgtcatcaagatcaacagctggaacagtaagctcgaacgatttcagaaattttattataactttatttgagcaccaatcctgtgcacatttaaaatggtaattgttgcgatgttgtgcaattttagggagattaagaagtacttccgtctgcatgattaaatttgtttgaagtgttttaagttctacaacacttaattatttgtgcattgttatgaaaataacatactttatgctttgcaattgtgtgcatctcttcagaaatgtcaagcggcaagagcctgggttgtccgctttttcagctctcatattgggagagttttataccagatgatatattactcTtgtgcatagtattttccctcttcattatgctatgtgcatataacaagggattgaaatattttgaagtataatccattgtgatccatgtatatAaaaaaagattggaatgaaggaataactccaattatcctagtctggaaggaagatcgatgatgatagtgatgaatcaaaggggctcaaaatatattttggactttacagcaatgttcctactctctgtggaaattttttgtgttatgcccataagcccatttgttctttgaggattttatatgattgatactcaaatcatcttttcaataagaccaccccacaaatgaccagctgaaaggccatattaccatgtagtggatacgcagtgttcactgaaagccttttgtgacataaagtttgtgcctgaatcacacttttttttttgttcttctggtttcgcctgattttctatggtcaatttatgttaaggcaatgtgtagtttggcttggtttcatacaataagatccttgattgcactaaatagtatgctatctaattagatactccctccatctacttttgatagtcatatttccaaatctgaaaaatttatttttaataggcatatttcaatccaacaaactatcatcttaataattttctcgaatttaatgcgtgactctccattcttcacacaagattggctacatgggcatcgagaaatgtaaatattaatgaatcgcttgtttacgaggaatgactggtactagcatatttAaatggatgataagtagaattacttatacttggtctgtgtgtcaagatgaaatatgactatcaaaagtaaatagagggagtattaagcattaaagactatgctgacaaacaatatatagacctctaaaagcttataagctttataagcaattctccagtccaccgtcctcgggTttatctgtgcaagatttcatagctagctggattgTttagagtagtttgtgacatgatttaagggtgtcaggacttcttgtgaactatggaatgagatttatgctatgtatgggtatcatctttgtgctatgctattgactgttaacattgttggcactgaatatttatgttgatgtgcaggcggagtggatggcacctgaagtacttcgtaatgaaccatcagacgagaagtaagttctaaattctaaaaactaagctctcagatgtattcgtaccttaaatgagtttgtgattgcttaaatggctgtgcatattggcagatgcgatgtttttagctatggggtcatactgtgggaactttgtacattactgcaaccttgggaaggcatgaacgccatgcaagtcgtcggagctgttgggtttcagaatcgtcgccttgatattccagataacactgatcccgccattgcagaaataatagcaaaatgctggcagacgttagtgtgcctaactcactttgtcgctcatctgcattcttCcggacgcactaaaacctgcattccattttcggaatacacaaccattttctcagtgttgcttcctgtatttggtgtagggacccaaaattgcggccatcatttgcagatatcatggcctcattgaaaccactgctgaaaaacatgaccgctcaagcgccaaggcagagagtacaacaaaccgacgagtaagaaaaaagaggatgttaccagctgcccgaaggcctaagtatagcaTttttttttgttttttgtatagtaacaccaattgtgtgttcgagattggaaagcgtgatgatgttagtgtgctgggtatccatctgtgaagaccagcgctgccaaacccgtccacgatggaggaaaattgaacagcggcaagaaactgtgcaaacgcgaatcaaatgtttagcacagttcttCcccaaaaacaccagtctcaggaaatcacatggcgggcggaagttacacatgctttgttcataccatctctcttttcctttatctcgtgttctccaccaaatggtggtatttgtgtaatatggcaagaaaaagaaaaaaaatgatttgctgtccatcaagaaaatgaaaaAggagaaaacggttgttcaatcgtgctcag
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| CDS seq | atgaagaacttcttcaggaagctccacatcggggaggggtcgggcgacggcgcctcctcgtctccccctccaccgccctcctcgaggaaggggagcggcggggtggggggtaatcatcacccgcacgccgagcagaggcagccatcggcgtcggcggtgtcgagctggcttgattccgtcccaggtcggcctcagccccctacgccgtcgacgccgtcggaggcggaggggtcgccgttctcgtcgtcggtagggtcgggggcgggggcgggggcgggggcggaggagaggaggcaatccgtggcggctgagaggaggagatcgcaggaggaggagtgggagaggaggcggtcgcaggaggaagaggccgtgagggagatgaggcggtcgcaggaggaggacgaggtggaggagcgagtgataagggagtcgtcggaggcggaggagaggaagcgggtcagggagaaggaggacgacgaccttgaggagttccagctgcagcttgtgcttgagatgagcgcgcgggacaatcctgaagagatggagattgaagttgccaagcagatcagcctgggcttctgcccgccccagagctctactgcagaggccctcgcggcccgatactggaatttcaacgcccttggctatgatgacagaatatcagatgggttttatgatctctatgtgactgggaatggcccggcttcaataaccatgccctctcttaaagatttgcgagcgcagtcactatcacatagggtcaactgggaagctgtattggtacacagaggtgaagatcctgagcttatgaaacttgaccagacggctctaatcatgagccttgaactccgtgaatctaaaccttcagaatttgttggaaatgatttggttcagaaacttgctggcctagtagccagacacatgggtggaactttttttgattctgagggcatgttggtgaaataccagaaaatgatgagatacctgagaaccagtattggaagtgtagttgttcctcttggccaattaaaaattggtctggcacgtcatcgcgcactgctatttaaggttttggccgataacattggtatcccctgtcgactcctgaaaggaaggcagtacactggatcggacgatggggctttgaatattgtgaaatttgatgatggaagggagttcattgttgatcttgtcgcagatcctggtacacttattccttcagatggtgctgttttgtctacagaatttgaagaaagttccttctcaaataatcatcattttaacaaagataatgacatcaggcagttgggatcttcaaatagtttatcgaattctgcatgtagttcttttgagtgtgagttacttgacagaagatctacatggatcaacgttggtccttctgatagtgatggagctacaacgagccagacaagtaaaaacaatcaacaaaatacactatcagattcattcgggattttatctgttagcacattcactagtgaaaataggcctattacaaatgaatcaagaagtacagacgacattgctgccgcaaagaacaaagaaagatcaagtgtaacaattaattcttcgtcaacttcaccttcaccttcttCcccagaagtaggcagtactccagctgtccggaggatgaaagtaaaggatatttcggagtacatgattaatgctgccaaagagaatccacaactagctcagaagatccatgaggttttacttgaaaatggagttgtagcaccacctgacttgttttcagaagattccatggaagagccaaaggacctcatcgtgtatgacaccaccctttttcaaagcaaggatgaaatgaaaaagaggatgaatgaacttgggtcgagggaatatgctgatcgtggtcatggtccattattgcctcatcatcctggacatgaactcccatcaaaagttcctcaccgggcacctctagactcacttaagccaATAATACTTTGGATCAAGAAAAAGATTCAGCTGAAGTTCGCCAGGATGCTGAAAGAACCTCAGATAAGTCAAGCGGAACAGAGAGTGCAAAATCTGAAATCACTCTGGATGATGTTGCGGAGTTTGAAATCCAATGGggaagaaattactattggggaacgcattggtcttggatcatttggagaagtttatagaggagagtggcatggaacagaagttgctgtaaagaagtttctgcaacaagatatttcaagtgatgctctggaagaatttagaactgaggtgcgaataatcaagaggttgcggcatccgaatgttgttctcttcatgggtgctattactcgtgtacccaatctttctattgtcaccgaatTTCttccaagaggtagcttatttcggttaattcatcgtcccaacaaccagttggatgaaagaaagcgcttaagaatggcacttgatgtggcacgtggtatgaattatctacataactgcacaccggtgatagtccatcgagatctgaagtctccaaacctactggttgacaagaattgggttgtgaaggtttgcgactttggtttatctaaaatgaagaacaagaccttcttgtcatcaagatcaacagctggaacagcggagtggatggcacctgaagtacttcgtaatgaaccatcagacgagaaatgcgatgtttttagctatggggtcatactgtgggaactttgtacattactgcaaccttgggaaggcatgaacgccatgcaagtcgtcggagctgttgggtttcagaatcgtcgccttgatattccagataacactgatcccgccattgcagaaataatagcaaaatgctggcagacggacccaaaattgcggccatcatttgcagatatcatggcctcattgaaaccactgctgaaaaacatgaccgctcaagcgccaaggcagagagtacaacaaaccgacgagtaa
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| Protein seq | MKNFFRKLHIGEGSGDGASSSPPPPPSSRKGSGGVGGNHHPHAEQRQPSASAVSSWLDSVPGRPQPPTPSTPSEAEGSPFSSSVGSGAGAGAGAEERRQSVAAERRRSQEEEWERRRSQEEEAVREMRRSQEEDEVEERVIRESSEAEERKRVREKEDDDLEEFQLQLVLEMSARDNPEEMEIEVAKQISLGFCPPQSSTAEALAARYWNFNALGYDDRISDGFYDLYVTGNGPASITMPSLKDLRAQSLSHRVNWEAVLVHRGEDPELMKLDQTALIMSLELRESKPSEFVGNDLVQKLAGLVARHMGGTFFDSEGMLVKYQKMMRYLRTSIGSVVVPLGQLKIGLARHRALLFKVLADNIGIPCRLLKGRQYTGSDDGALNIVKFDDGREFIVDLVADPGTLIPSDGAVLSTEFEESSFSNNHHFNKDNDIRQLGSSNSLSNSACSSFECELLDRRSTWINVGPSDSDGATTSQTSKNNQQNTLSDSFGILSVSTFTSENRPITNESRSTDDIAAAKNKERSSVTINSSSTSPSPSSPEVGSTPAVRRMKVKDISEYMINAAKENPQLAQKIHEVLLENGVVAPPDLFSEDSMEEPKDLIVYDTTLFQSKDEMKKRMNELGSREYADRGHGPLLPHHPGHELPSKVPHRAPLDSLKPIILWIKKKIQLKFARMLKEPQISQAEQRVQNLKSLWMMLRSLKSNGEEITIGERIGLGSFGEVYRGEWHGTEVAVKKFLQQDISSDALEEFRTEVRIIKRLRHPNVVLFMGAITRVPNLSIVTEFLPRGSLFRLIHRPNNQLDERKRLRMALDVARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSKMKNKTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVFSYGVILWELCTLLQPWEGMNAMQVVGAVGFQNRRLDIPDNTDPAIAEIIAKCWQTDPKLRPSFADIMASLKPLLKNMTAQAPRQRVQQTDE |
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| Function | Probable serine/threonine-protein kinase SIS8 [UniProtKB/Swiss-Prot:Q9C9U5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0033120 | OsLima_02g0033120.01 | Chr02 | 33110488 | 33118417 | + | NAM | ||
| CDS seq | atgaagaacttcttcaggaagctccacatcggggaggggtcgggcgacggcgcctcctcgtctccccctccaccgccctcctcgaggaaggggagcggcggggtggggggtaatcatcacccgcacgccgagcagaggcagccatcggcgtcggcggtgtcgagctggcttgattccgtcccaggtcggcctcagccccctacgccgtcgacgccgtcggaggcggaggggtcgccgttctcgtcgtcggtagggtcgggggcgggggcgggggcgggggcggaggagaggaggcaatccgtggcggctgagaggaggagatcgcaggaggaggagtgggagaggaggcggtcgcaggaggaagaggccgtgagggagatgaggcggtcgcaggaggaggacgaggtggaggagcgagtgataagggagtcgtcggaggcggaggagaggaagcgggtcagggagaaggaggacgacgaccttgaggagttccagctgcagcttgtgcttgagatgagcgcgcgggacaatcctgaagagatggagattgaagttgccaagcagatcagcctgggcttctgcccgccccagagctctactgcagaggccctcgcggcccgatactggaatttcaacgcccttggctatgatgacagaatatcagatgggttttatgatctctatgtgactgggaatggcccggcttcaataaccatgccctctcttaaagatttgcgagcgcagtcactatcacatagggtcaactgggaagctgtattggtacacagaggtgaagatcctgagcttatgaaacttgaccagacggctctaatcatgagccttgaactccgtgaatctaaaccttcagaatttgttggaaatgatttggttcagaaacttgctggcctagtagccagacacatgggtggaactttttttgattctgagggcatgttggtgaaataccagaaaatgatgagatacctgagaaccagtattggaagtgtagttgttcctcttggccaattaaaaattggtctggcacgtcatcgcgcactgctatttaaggttttggccgataacattggtatcccctgtcgactcctgaaaggaaggcagtacactggatcggacgatggggctttgaatattgtgaaatttgatgatggaagggagttcattgttgatcttgtcgcagatcctggtacacttattccttcagatggtgctgttttgtctacagaatttgaagaaagttccttctcaaataatcatcattttaacaaagataatgacatcaggcagttgggatcttcaaatagtttatcgaattctgcatgtagttcttttgagtgtgagttacttgacagaagatctacatggatcaacgttggtccttctgatagtgatggagctacaacgagccagacaagtaaaaacaatcaacaaaatacactatcagattcattcgggattttatctgttagcacattcactagtgaaaataggcctattacaaatgaatcaagaagtacagacgacattgctgccgcaaagaacaaagaaagatcaagtgtaacaattaattcttcgtcaacttcaccttcaccttcttCcccagaagtaggcagtactccagctgtccggaggatgaaagtaaaggatatttcggagtacatgattaatgctgccaaagagaatccacaactagctcagaagatccatgaggttttacttgaaaatggagttgtagcaccacctgacttgttttcagaagattccatggaagagccaaaggacctcatcgtgtatgacaccaccctttttcaaagcaaggatgaaatgaaaaagaggatgaatgaacttgggtcgagggaatatgctgatcgtggtcatggtccattattgcctcatcatcctggacatgaactcccatcaaaagttcctcaccgggcacctctagactcacttaagccaATAATACTTTGGATCAAGAAAAAGATTCAGCTGAAGTTCGCCAGGATGCTGAAAGAACCTCAGATAAGTCAAGCGGAACAGAGAGTGCAAAATCTGAAATCACTCTGGATGATGTTGCGGAGTTTGAAATCCAATGGggaagaaattactattggggaacgcattggtcttggatcatttggagaagtttatagaggagagtggcatggaacagaagttgctgtaaagaagtttctgcaacaagatatttcaagtgatgctctggaagaatttagaactgaggtgcgaataatcaagaggttgcggcatccgaatgttgttctcttcatgggtgctattactcgtgtacccaatctttctattgtcaccgaatTTCttccaagaggtagcttatttcggttaattcatcgtcccaacaaccagttggatgaaagaaagcgcttaagaatggcacttgatgtggcacgtggtatgaattatctacataactgcacaccggtgatagtccatcgagatctgaagtctccaaacctactggttgacaagaattgggttgtgaaggtttgcgactttggtttatctaaaatgaagaacaagaccttcttgtcatcaagatcaacagctggaacagcggagtggatggcacctgaagtacttcgtaatgaaccatcagacgagaaatgcgatgtttttagctatggggtcatactgtgggaactttgtacattactgcaaccttgggaaggcatgaacgccatgcaagtcgtcggagctgttgggtttcagaatcgtcgccttgatattccagataacactgatcccgccattgcagaaataatagcaaaatgctggcagacggacccaaaattgcggccatcatttgcagatatcatggcctcattgaaaccactgctgaaaaacatgaccgctcaagcgccaaggcagagagtacaacaaaccgacgagtaa
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| Protein seq | MKNFFRKLHIGEGSGDGASSSPPPPPSSRKGSGGVGGNHHPHAEQRQPSASAVSSWLDSVPGRPQPPTPSTPSEAEGSPFSSSVGSGAGAGAGAEERRQSVAAERRRSQEEEWERRRSQEEEAVREMRRSQEEDEVEERVIRESSEAEERKRVREKEDDDLEEFQLQLVLEMSARDNPEEMEIEVAKQISLGFCPPQSSTAEALAARYWNFNALGYDDRISDGFYDLYVTGNGPASITMPSLKDLRAQSLSHRVNWEAVLVHRGEDPELMKLDQTALIMSLELRESKPSEFVGNDLVQKLAGLVARHMGGTFFDSEGMLVKYQKMMRYLRTSIGSVVVPLGQLKIGLARHRALLFKVLADNIGIPCRLLKGRQYTGSDDGALNIVKFDDGREFIVDLVADPGTLIPSDGAVLSTEFEESSFSNNHHFNKDNDIRQLGSSNSLSNSACSSFECELLDRRSTWINVGPSDSDGATTSQTSKNNQQNTLSDSFGILSVSTFTSENRPITNESRSTDDIAAAKNKERSSVTINSSSTSPSPSSPEVGSTPAVRRMKVKDISEYMINAAKENPQLAQKIHEVLLENGVVAPPDLFSEDSMEEPKDLIVYDTTLFQSKDEMKKRMNELGSREYADRGHGPLLPHHPGHELPSKVPHRAPLDSLKPIILWIKKKIQLKFARMLKEPQISQAEQRVQNLKSLWMMLRSLKSNGEEITIGERIGLGSFGEVYRGEWHGTEVAVKKFLQQDISSDALEEFRTEVRIIKRLRHPNVVLFMGAITRVPNLSIVTEFLPRGSLFRLIHRPNNQLDERKRLRMALDVARGMNYLHNCTPVIVHRDLKSPNLLVDKNWVVKVCDFGLSKMKNKTFLSSRSTAGTAEWMAPEVLRNEPSDEKCDVFSYGVILWELCTLLQPWEGMNAMQVVGAVGFQNRRLDIPDNTDPAIAEIIAKCWQTDPKLRPSFADIMASLKPLLKNMTAQAPRQRVQQTDE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0033120 | OsLima_02g0033120.02 | Chr02 | 33110285 | 33118467 | + | IsoSeq | ||
| CDS seq | atgatggaagggagttcattgttgatcttgtcgcagatcctggtacacttattccttcagatggtgctgttttgtctacagaatttgaagaaagttccttctcaaataatcatcattttaacaaagataatgacatcaggcagttgggatcttcaaatagtttatcgaattctgcatgtagttcttttgagtgtgagttacttgacagaagatctacatggatcaacgttggtccttctgatagtgatggagctacaacgagccagacaagtaaaaacaatcaacaaaatacactatcagattcattcgggattttatctgttagcacattcactagtgaaaataggcctattacaaatgaatcaagaagtacagacgacattgctgccgcaaagaacaaagaaagatcaa
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| Protein seq | MMEGSSLLILSQILVHLFLQMVLFCLQNLKKVPSQIIIILTKIMTSGSWDLQIVYRILHVVLLSVSYLTEDLHGSTLVLLIVMELQRARQVKTINKIHYQIHSGFYLLAHSLVKIGLLQMNQEVQTTLLPQRTKKDQ |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr02 | 33112881 | 33114267 | + | OsLima_02g0033120.02 | OsLima_02g0033120.02,OsLima_02g0033120.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.349711 | 0.821855 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0743500 | RBH | 2.141229 | 4.121861 | 6.440167 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g50970 | RBH | 1.373681 | 2.654155 | 1.572086 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0743500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0033360 | RBH | 1.590079 | 62.408813 | 15.926554 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0033450 | RBH | 0.314865 | 9.507298 | 4.245030 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0033350 | RBH | 2.609864 | 50.414867 | 19.342430 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0032940 | RBH | 0.455413 | 1.105605 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0033050 | RBH | 9.052249 | 39.086796 | 32.872612 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0510400 | RBH | 7.7199335 | 47.60939 | 9.5616935 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0032840 | RBH | 0.649578 | 2.855322 | 2.282560 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0539300 | RBH | 9.7062585 | 65.2255635 | 22.6783265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0009000 | RBH | 0.322675 | 0.475656 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0032900 | RBH | 0.985059 | 29.041828 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0033240 | RBH | 8.764318 | 55.026905 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0033090 | RBH | 1.608681 | 3.721440 | 2.690652 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0032710 | RBH | 0.879061 | 18.415340 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G033400 | RBH | 0.966446 | 10.413994 | 4.905427 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0033130 | RBH | 2.618437 | 63.779179 | 10.263740 |
