Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0031390 | OGI:02084540 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:31817924-31822916 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | catacgcaccactgaaccacctgcaagacggaggtggtttcagagtttagagataagatggcgctgcatcttcttcacctgcttgccttctccctgctcttcgcagtggcgacccctatcagggacatcaccgatgtgtgctcgtcacagatcaagggtatcaataatcctccttgtcttaattagttagctttctcttgattcatgctgttaattatgtctggtttctgcaagtagatgaaagatatgtgctttgttgacatatccataacagtacagcttactactgagtttacatagcgctagccaattgagtagaaagactgaaagagcaagagtaccaattaaagcacctataagtaggatttgaagaaccaatttcagtttgcagtcaaaatagcatcacatcagcttgaggcatcacttccTtttttctagcctggagtctttgcttgttttagcacctcggttaaactagtacaactagaatcaacatggtgaatggacgtaaatatggtggtagtgtaaccacaaatttgtattggtcatgtagtatccttcccctgaaaacattttcaggggaagtctgaattttctttgtcgatactataactaacttaagaaaaaattgaagaaatgacagcgagggtgggagccaaatgacaaccaaaatcgaatcttttcggctcgatcatttctcttcttttccaactcttttcgccgccttgaattaaaatatacaggacagtcaatgatccgtcgccaccagaagaaaagagttttgttaggtacacacttttgtcgacggctaattgttgccgggcggcacgcaggtgcagcgatcgatcttatcaccacacaagcgtttttccaatgctttgtcctgaccgacaattttttttgtacaaatccattattagcggcaaaaactccgtccaagatggcatattttcctaagaaaaaaaaaactcttcctattgagtcctctcgatagcatcctgttctgactttaagtagatataatatgtggacttcacattcagcgagtttatatttcagtgatgaccaataccagagaacaatactttggagagacttatctctttccaatacgaccaaagccagccttcaatcgaaggccgtacacggtacactgttcactgagccatcgcaatttatatatggtctcagtcgaaattgatggccggttagtggttcgattgactgctgtcatggaaggccatgatgtgaagctctaacggtagccatacttcgcctctcccccgtgaaaccaccgatatctatcagcctatcatgcgccgcgcgcgaccacaaatgcgccggacaggatggccgccgagatgggcaccggatcgatcggctagaaaacgtcaccgatacgtggggtttttcaatgccattgcaaatggcttcctttttggcaactttttcttttgccatgacttgaatcatccagcaccgatcgatgatattacggctgcatgtaggcacgctcaacagaaactcggtgctgctgtaaatagtttgcctagttagccgggccacctctggattgtactctcaccgtatcaaaataagtataacagcttaatatatgatgagacactaggatacgttacattgctataTtttgatatggaagttgtactactgttgtacgtgatggtccagtccaacgccccctggcttcttcagaagtggttagttctccagtcatccaaagcagcagtacaatcctggttgttcccacttgacaaaaaatatctttggttgctcgtcataatggaggggggaaggcaaggtaccatatgctttgtaggtgttctgtacttaggcaccaagactgggtgttgtgttaatttgtggtcctcgttatagacatcagacaatcactccattatcttgtgtatcatgttaactaccaaccaaatgcatcaacttcagtccctttttgacgtgtttcctctcttgttggactaatgttagcacgtccaagctcttagattgtctaagcaatgccaaagtagaatcttccattttgcactagttcacaaacactggaaattaactgagactactattccatgcatgggccttctaccgagaatatttcactcaatttcacaatgactatgctggttaactagctagcctatctaccacctacagcgatccagcgttgtcttgggatttaatatggttatgaccagataatgccaactgcaaatcctaccatcaataagagcttgaatgcttgatcgatacgtgaccgcaatcttgggtacgtgcccgggttgtacgctgttcgtacatttatatattccccagtagcacgcaacacagctgcaagtcatatatatgatcgacactccttatctgtaacataaataaatgaattattgttgcatgattgtttggacaattggatcatgtgatgacatatccacactcggttgggaacggaaatcatatgagctgggacatttatacaatctgatgcccagtacttctccctagttgtataatgtccgtacgtctcgttatacgtcactgtccagtcacaagacggctactactgtaaaaatttgacgacaagatggcgcaacggaactgatggccatgtttaacgagctactccctccggttctatataataattggtgttttggacaagattgatgtcaaacttttataactttgactatcaacaactttaaaaatatttagtttaaagaacatacatagatttgtctttcaaaacactataataaaagtaaacatgcatttatttattgtgtatattataatagaaaatataaggtcaaatatatattttgtaaaccgtgtcattgtccaaaccgtcaaataaaatgaaaccggagggagtatagtgtattttcaatcatcaattaaatgcattgttgtttatgtggcttatttgaaaacataaaaatgacacctcccattaattgcaaatggccttatagccgcggcagaatttgtttagaatctctaattttaaagtagttttttttttgtcatggttgcggtaaaaattggatgaattgacgcgggcgaattaaggacgtgccggtgaattttgtgcagatttccagtacctgaacagcacgggcctgcaccttgagctgcaccacccgcggagcccctgctcgccggcgccggtcccggccgacctcccgttcacggcggtgctcacccacgacgatgcgcgcatctcgtcgctggcggcgcgcctcgccaagacgccgtcggcgcgcgccacctccctggacgccgacgccgacgccggcctcgccggctccctcgcgtccgtgccgctcagccccggcgcgtcggtgggcgtgggcaactacgtgacgcgcatgggcctcggcacgccggcgacgcagtacgtgatggtcgtggacacgggctcctcgctcacctggctgcagtgctcgccgtgcctcgtgtcgtgccaccggcagtccggcccggtgttcaaccccaagtcgtcgagcacctacgcctccgtggggtgctccgcgcagcagtgcagcgacctcccctccgccacgctcaacccgtcggcttgctcctcctccaacgtctgcatctaccaggccagctacggcgacagctccttctccgtcggctacctcagcaaggacaccgtctcgttcggctcgacgtcgctgccaaacttctactacggctgtggccaggacaacgaggggttgttcggccgatccgccgggctcatcggcctcgcccgcaacaagctctcgctcctgtaccagctcgcgccaagccttggctactccttcacctactgcctcccgtcgtcgtcgtcatcggggtacctgtcgctcgggtcgtacaacccggggcaatactcgtacacgccgatggtgtccagctcgctcgacgactcgctctacttcatcaagctgtccgggatgacggtcgccgggaatccgctgtccgtgtcgtcgtcggcgtactccagcctgccgacgatcatcgactccggcacggtgatcacgcgcctgccgacgagcgtgtactcggcgctgagcaaggcggtggcggcggccatgaaggggacgtcccgcgcgtcggcgtactccatcctcgacacgtgcttcaagggccaggcctcgcgggtgagcgcgccggcggtcaccatgtccttcgccggcggcgcggcgctcaagctgtcggcgcagaacctcctcgtcgacgtcgacgactccaccacgtgcctggcgttcgcgccggccaggagcgccgccatcatcgggaacacgcagcagcagacgttcagcgtcgtctacgacgtcaagagcagcaggatcgggttcgccgccggcggctgcagctgagaacgccgagagcgccgccgaacgcgcacccaggcatggtccgcatggatacttgggtaaattaatgggcaatccatttgctattggctatactagctagcacgccattcatcaattcaaccatacaagctgttacataagcatggggatgaacatatcacaaggtagataaaaacgaattggtaaaggtgtttgctctagcgcttagataagaaaacacaactcaaaaacaatattagcgtaatgttaattaatttatgttgtcgaggccagggggtacagagtatttgaaagtggaacagcaggactccaaatatgatacactacacaaatccagtagaggtgacatatatagcttgtcatgtagtaattctttggcaagtactggccgaaatgtttactctgtaaatgtaaattaatgggtgtgtgtgtgctgcgtttgtagcttcttctttagtaagtacaagagctccaaaactgtaagcctgtattcgtgtgtgagtactttggacaatgaaatcaagttggtttatatactccaaagaaatatatatgttcctgctatctgaattttcagatacttttgc
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| CDS seq | atggcgctgcatcttcttcacctgcttgccttctccctgctcttcgcagtggcgacccctatcagggacatcaccgatgtgtgctcgtcacagatcaaggatttccagtacctgaacagcacgggcctgcaccttgagctgcaccacccgcggagcccctgctcgccggcgccggtcccggccgacctcccgttcacggcggtgctcacccacgacgatgcgcgcatctcgtcgctggcggcgcgcctcgccaagacgccgtcggcgcgcgccacctccctggacgccgacgccgacgccggcctcgccggctccctcgcgtccgtgccgctcagccccggcgcgtcggtgggcgtgggcaactacgtgacgcgcatgggcctcggcacgccggcgacgcagtacgtgatggtcgtggacacgggctcctcgctcacctggctgcagtgctcgccgtgcctcgtgtcgtgccaccggcagtccggcccggtgttcaaccccaagtcgtcgagcacctacgcctccgtggggtgctccgcgcagcagtgcagcgacctcccctccgccacgctcaacccgtcggcttgctcctcctccaacgtctgcatctaccaggccagctacggcgacagctccttctccgtcggctacctcagcaaggacaccgtctcgttcggctcgacgtcgctgccaaacttctactacggctgtggccaggacaacgaggggttgttcggccgatccgccgggctcatcggcctcgcccgcaacaagctctcgctcctgtaccagctcgcgccaagccttggctactccttcacctactgcctcccgtcgtcgtcgtcatcggggtacctgtcgctcgggtcgtacaacccggggcaatactcgtacacgccgatggtgtccagctcgctcgacgactcgctctacttcatcaagctgtccgggatgacggtcgccgggaatccgctgtccgtgtcgtcgtcggcgtactccagcctgccgacgatcatcgactccggcacggtgatcacgcgcctgccgacgagcgtgtactcggcgctgagcaaggcggtggcggcggccatgaaggggacgtcccgcgcgtcggcgtactccatcctcgacacgtgcttcaagggccaggcctcgcgggtgagcgcgccggcggtcaccatgtccttcgccggcggcgcggcgctcaagctgtcggcgcagaacctcctcgtcgacgtcgacgactccaccacgtgcctggcgttcgcgccggccaggagcgccgccatcatcgggaacacgcagcagcagacgttcagcgtcgtctacgacgtcaagagcagcaggatcgggttcgccgccggcggctgcagctga
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| Protein seq | MALHLLHLLAFSLLFAVATPIRDITDVCSSQIKDFQYLNSTGLHLELHHPRSPCSPAPVPADLPFTAVLTHDDARISSLAARLAKTPSARATSLDADADAGLAGSLASVPLSPGASVGVGNYVTRMGLGTPATQYVMVVDTGSSLTWLQCSPCLVSCHRQSGPVFNPKSSSTYASVGCSAQQCSDLPSATLNPSACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSTSLPNFYYGCGQDNEGLFGRSAGLIGLARNKLSLLYQLAPSLGYSFTYCLPSSSSSGYLSLGSYNPGQYSYTPMVSSSLDDSLYFIKLSGMTVAGNPLSVSSSAYSSLPTIIDSGTVITRLPTSVYSALSKAVAAAMKGTSRASAYSILDTCFKGQASRVSAPAVTMSFAGGAALKLSAQNLLVDVDDSTTCLAFAPARSAAIIGNTQQQTFSVVYDVKSSRIGFAAGGCS |
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| Function | Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0031390 | OsLima_02g0031390.01 | Chr02 | 31817924 | 31822916 | + | NAM | ||
| CDS seq | atggcgctgcatcttcttcacctgcttgccttctccctgctcttcgcagtggcgacccctatcagggacatcaccgatgtgtgctcgtcacagatcaaggatttccagtacctgaacagcacgggcctgcaccttgagctgcaccacccgcggagcccctgctcgccggcgccggtcccggccgacctcccgttcacggcggtgctcacccacgacgatgcgcgcatctcgtcgctggcggcgcgcctcgccaagacgccgtcggcgcgcgccacctccctggacgccgacgccgacgccggcctcgccggctccctcgcgtccgtgccgctcagccccggcgcgtcggtgggcgtgggcaactacgtgacgcgcatgggcctcggcacgccggcgacgcagtacgtgatggtcgtggacacgggctcctcgctcacctggctgcagtgctcgccgtgcctcgtgtcgtgccaccggcagtccggcccggtgttcaaccccaagtcgtcgagcacctacgcctccgtggggtgctccgcgcagcagtgcagcgacctcccctccgccacgctcaacccgtcggcttgctcctcctccaacgtctgcatctaccaggccagctacggcgacagctccttctccgtcggctacctcagcaaggacaccgtctcgttcggctcgacgtcgctgccaaacttctactacggctgtggccaggacaacgaggggttgttcggccgatccgccgggctcatcggcctcgcccgcaacaagctctcgctcctgtaccagctcgcgccaagccttggctactccttcacctactgcctcccgtcgtcgtcgtcatcggggtacctgtcgctcgggtcgtacaacccggggcaatactcgtacacgccgatggtgtccagctcgctcgacgactcgctctacttcatcaagctgtccgggatgacggtcgccgggaatccgctgtccgtgtcgtcgtcggcgtactccagcctgccgacgatcatcgactccggcacggtgatcacgcgcctgccgacgagcgtgtactcggcgctgagcaaggcggtggcggcggccatgaaggggacgtcccgcgcgtcggcgtactccatcctcgacacgtgcttcaagggccaggcctcgcgggtgagcgcgccggcggtcaccatgtccttcgccggcggcgcggcgctcaagctgtcggcgcagaacctcctcgtcgacgtcgacgactccaccacgtgcctggcgttcgcgccggccaggagcgccgccatcatcgggaacacgcagcagcagacgttcagcgtcgtctacgacgtcaagagcagcaggatcgggttcgccgccggcggctgcagctga
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| Protein seq | MALHLLHLLAFSLLFAVATPIRDITDVCSSQIKDFQYLNSTGLHLELHHPRSPCSPAPVPADLPFTAVLTHDDARISSLAARLAKTPSARATSLDADADAGLAGSLASVPLSPGASVGVGNYVTRMGLGTPATQYVMVVDTGSSLTWLQCSPCLVSCHRQSGPVFNPKSSSTYASVGCSAQQCSDLPSATLNPSACSSSNVCIYQASYGDSSFSVGYLSKDTVSFGSTSLPNFYYGCGQDNEGLFGRSAGLIGLARNKLSLLYQLAPSLGYSFTYCLPSSSSSGYLSLGSYNPGQYSYTPMVSSSLDDSLYFIKLSGMTVAGNPLSVSSSAYSSLPTIIDSGTVITRLPTSVYSALSKAVAAAMKGTSRASAYSILDTCFKGQASRVSAPAVTMSFAGGAALKLSAQNLLVDVDDSTTCLAFAPARSAAIIGNTQQQTFSVVYDVKSSRIGFAAGGCS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.477800 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0720900 | RBH | 2.481555 | 1.201560 | 6.216532 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48900 | RBH | 1.094386 | 0.681640 | 1.190356 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0720900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031650 | RBH | 0.939074 | 98.127739 | 21.912287 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031760 | RBH | 0.616436 | 21.734766 | 2.194471 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031630 | RBH | 0.937506 | 78.618080 | 21.335514 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031220 | RBH | 0.070573 | 1.551733 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031340 | RBH | 3.658348 | 64.968697 | 33.586720 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0488200 | RBH | 31.38556 | 17.9286395 | 0.775772 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031100 | RBH | 0.093577 | 2.103699 | 1.984113 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0516100 | RBH | 35.8502865 | 6.911007 | 1.2307375 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012740 | SBH | 0.0 | 0.172260 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031180 | RBH | 1.767378 | 14.871450 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031550 | RBH | 8.109057 | 40.337543 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031390 | RBH | 1.321315 | 2.825407 | 2.080052 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0031010 | RBH | 0.200689 | 17.612854 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031680 | RBH | 0.227707 | 6.352431 | 6.311721 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031430 | RBH | 0.000000 | 24.922022 | 11.366362 |
