Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0031370 | OGI:02084500 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:31798958-31800879 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | agggcaaactgtagtccattgggaatcaccaagaccattctcacacactaattattggccagacacttggatcactaatgatgcatccgtcgattgggaatcaaacgatcgaattaatcagtataaagtctttattattcataaaaaaatcatgaaaagttcactcctaatataatatttttttagagctagggactaatataatattttggttgttggattacaattgcaatatatatcattatatcttgtcatcatcacacgtcacgactcttacctcgcaaccacaaacaagtagacgaccacatgagagcaacctactgctaccctcttggcctctacgtgtgtcgtgttgcccggcccgccaggcgccggcgtcgcgccgcccgccccggtcaacacgcgccggaccggaagccgagcgtgctgctgccgacgtcgtacaggacctcgaacgtccgctgctgcacgttcccgatgatgccggtggtcccgtcgtcgccggtggcggcgaacgcgaggcagttgccgtacatgatcccgttcgggtcgaggtcgatggcggcgccgccggagaacaccagcgcgacggtcggtatggagatctgggtctggccggcgaagtcgaagcacgtgtcgaggatgctcctggccggcgccgaccggtactgcttcatgccggccttgaacgccgacgacagcgccgagtacgccgtcggcggcagccgcgtgatgatcgtgccggagtccaccacggacccggcggcgaacaccgacggcgacagcccgagctgcttcccgcccacggcgatgtcctgcagcctcgcgccgtagaacgtcgggatttgcttgctcctgagcatccgcgtcgtcacgaaccccgacgcgccgccgccgccgccgagcgtgaggaacccggacgagcccgatgtcggcgggaggcagtacgagaaggaattcccgtacgccgccgccgtctgcgacacgagcgactgcgcgccgccgccgaggcccatgagcccgtcggtctggtcgctgaatcccgactcgaggtggctgcacccgaactggaatcccttcacggcgtcggaggcgccggacagcgtcagcgtgtcgcggctgtacgtgccgttggtggtcgagccgtcgccgtactggacgccgtactggcactcgtagttggtggcgccgcagccgttgccttgctgctcgagctgcgcgcactcggcggcggcgcaggagaccgccctgtaggtgctcgacttggcggggtcgaacagcgcgcccgtctgcgcgtggcacggcgggttggggcacgggttgcactgcacccacgacacgtcgctgccggtgtcgatggtcaccgtctgcgtcacggccggcgtgccgagcccgacggagatgacgtactccagcgtgtccagggaggagcccagcttggtcggcacggacgacgacaccttcgactgctggagatcgccggcgccatcgacggcggcgttcatggcgaacttccgctggatgtgctcggctcggagctggtcgcgtttgagcagctcctcttcggtcggcctcttcttggacgacggcaccggcgagcatggcccgtgccggtggttcaacgccaccgtggttccactcaacgacgacgaaatcgctgcaaaatttgacgcaccaaaacgattacaatttcactgaaaaaccacacgaaaattgcagaaaaactatgcgcttgcatggacagtcaccatttcgctcggagcagacggcctcagaattcagctcaagaaccttgtaactctgtccatctcctgcatgagcaactacagagtggtagctgcacaagaggagaagcagtagcggcgaaacagaagccatggctaattccttgcttcctaggcaagctgatcagctagataatt
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| CDS seq | atggcttctgtttcgccgctactgcttctcctcttgtgcagctaccactctgtagttgctcatgcaggagatggacagagttacaaggttcttgagctgaattctgaggccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccggtgccgtcgtccaagaagaggccgaccgaagaggagctgctcaaacgcgaccagctccgagccgagcacatccagcggaagttcgccatgaacgccgccgtcgatggcgccggcgatctccagcagtcgaaggtgtcgtcgtccgtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctcggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtgcagtgcaacccgtgccccaacccgccgtgccacgcgcagacgggcgcgctgttcgaccccgccaagtcgagcacctacagggcggtctcctgcgccgccgccgagtgcgcgcagctcgagcagcaaggcaacggctgcggcgccaccaactacgagtgccagtacggcgtccagtacggcgacggctcgaccaccaacggcacgtacagccgcgacacgctgacgctgtccggcgcctccgacgccgtgaagggattccagttcgggtgcagccacctcgagtcgggattcagcgaccagaccgacgggctcatgggcctcggcggcggcgcgcagtcgctcgtgtcgcagacggcggcggcgtacgggaattccttctcgtactgcctcccgccgacatcgggctcgtccgggttcctcacgctcggcggcggcggcggcgcgtcggggttcgtgacgacgcggatgctcaggagcaagcaaatcccgacgttctacggcgcgaggctgcaggacatcgccgtgggcgggaagcagctcgggctgtcgccgtcggtgttcgccgccgggtccgtggtggactccggcacgatcatcacgcggctgccgccgacggcgtactcggcgctgtcgtcggcgttcaaggccggcatgaagcagtaccggtcggcgccggccaggagcatcctcgacacgtgcttcgacttcgccggccagacccagatctccataccgaccgtcgcgctggtgttctccggcggcgccgccatcgacctcgacccgaacgggatcatgtacggcaactgcctcgcgttcgccgccaccggcgacgacgggaccaccggcatcatcgggaacgtgcagcagcggacgttcgaggtcctgtacgacgtcggcagcagcacgctcggcttccggtccggcgcgtgttga
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| Protein seq | MASVSPLLLLLLCSYHSVVAHAGDGQSYKVLELNSEAVCSERNAISSSLSGTTVALNHRHGPCSPVPSSKKRPTEEELLKRDQLRAEHIQRKFAMNAAVDGAGDLQQSKVSSSVPTKLGSSLDTLEYVISVGLGTPAVTQTVTIDTGSDVSWVQCNPCPNPPCHAQTGALFDPAKSSTYRAVSCAAAECAQLEQQGNGCGATNYECQYGVQYGDGSTTNGTYSRDTLTLSGASDAVKGFQFGCSHLESGFSDQTDGLMGLGGGAQSLVSQTAAAYGNSFSYCLPPTSGSSGFLTLGGGGGASGFVTTRMLRSKQIPTFYGARLQDIAVGGKQLGLSPSVFAAGSVVDSGTIITRLPPTAYSALSSAFKAGMKQYRSAPARSILDTCFDFAGQTQISIPTVALVFSGGAAIDLDPNGIMYGNCLAFAATGDDGTTGIIGNVQQRTFEVLYDVGSSTLGFRSGAC |
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| Function | Aspartyl protease family protein At5g10770 [UniProtKB/Swiss-Prot:Q8S9J6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0031370 | OsLima_02g0031370.01 | Chr02 | 31798958 | 31800879 | - | NAM | ||
| CDS seq | atggcttctgtttcgccgctactgcttctcctcttgtgcagctaccactctgtagttgctcatgcaggagatggacagagttacaaggttcttgagctgaattctgaggccgtctgctccgagcgaaatgcgatttcgtcgtcgttgagtggaaccacggtggcgttgaaccaccggcacgggccatgctcgccggtgccgtcgtccaagaagaggccgaccgaagaggagctgctcaaacgcgaccagctccgagccgagcacatccagcggaagttcgccatgaacgccgccgtcgatggcgccggcgatctccagcagtcgaaggtgtcgtcgtccgtgccgaccaagctgggctcctccctggacacgctggagtacgtcatctccgtcgggctcggcacgccggccgtgacgcagacggtgaccatcgacaccggcagcgacgtgtcgtgggtgcagtgcaacccgtgccccaacccgccgtgccacgcgcagacgggcgcgctgttcgaccccgccaagtcgagcacctacagggcggtctcctgcgccgccgccgagtgcgcgcagctcgagcagcaaggcaacggctgcggcgccaccaactacgagtgccagtacggcgtccagtacggcgacggctcgaccaccaacggcacgtacagccgcgacacgctgacgctgtccggcgcctccgacgccgtgaagggattccagttcgggtgcagccacctcgagtcgggattcagcgaccagaccgacgggctcatgggcctcggcggcggcgcgcagtcgctcgtgtcgcagacggcggcggcgtacgggaattccttctcgtactgcctcccgccgacatcgggctcgtccgggttcctcacgctcggcggcggcggcggcgcgtcggggttcgtgacgacgcggatgctcaggagcaagcaaatcccgacgttctacggcgcgaggctgcaggacatcgccgtgggcgggaagcagctcgggctgtcgccgtcggtgttcgccgccgggtccgtggtggactccggcacgatcatcacgcggctgccgccgacggcgtactcggcgctgtcgtcggcgttcaaggccggcatgaagcagtaccggtcggcgccggccaggagcatcctcgacacgtgcttcgacttcgccggccagacccagatctccataccgaccgtcgcgctggtgttctccggcggcgccgccatcgacctcgacccgaacgggatcatgtacggcaactgcctcgcgttcgccgccaccggcgacgacgggaccaccggcatcatcgggaacgtgcagcagcggacgttcgaggtcctgtacgacgtcggcagcagcacgctcggcttccggtccggcgcgtgttga
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| Protein seq | MASVSPLLLLLLCSYHSVVAHAGDGQSYKVLELNSEAVCSERNAISSSLSGTTVALNHRHGPCSPVPSSKKRPTEEELLKRDQLRAEHIQRKFAMNAAVDGAGDLQQSKVSSSVPTKLGSSLDTLEYVISVGLGTPAVTQTVTIDTGSDVSWVQCNPCPNPPCHAQTGALFDPAKSSTYRAVSCAAAECAQLEQQGNGCGATNYECQYGVQYGDGSTTNGTYSRDTLTLSGASDAVKGFQFGCSHLESGFSDQTDGLMGLGGGAQSLVSQTAAAYGNSFSYCLPPTSGSSGFLTLGGGGGASGFVTTRMLRSKQIPTFYGARLQDIAVGGKQLGLSPSVFAAGSVVDSGTIITRLPPTAYSALSSAFKAGMKQYRSAPARSILDTCFDFAGQTQISIPTVALVFSGGAAIDLDPNGIMYGNCLAFAATGDDGTTGIIGNVQQRTFEVLYDVGSSTLGFRSGAC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.132504 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0720600 | RBH | 0.140717 | 0.144308 | 2.060157 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g48870 | RBH | 0.090171 | 0.091971 | 0.502520 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0720600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0031630 | RBH | 0.099256 | 61.024048 | 2.471973 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0031740 | RBH | 0.000000 | 18.746540 | 2.004327 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0031610 | RBH | 0.0 | 24.635979 | 3.258615 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0031200 | RBH | 0.0 | 1.219734 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0031320 | RBH | 0.0 | 24.129620 | 5.778914 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0488000 | RBH | 2.525479 | 19.1746065 | 0.3552635 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0031080 | RBH | 0.0 | 1.663260 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0515900 | RBH | 3.63518 | 17.0418455 | 0.8906425 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_06g0012800 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0031160 | RBH | 0.0 | 3.299874 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0031530 | RBH | 0.0 | 60.588966 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0031370 | RBH | 0.0 | 1.268407 | 0.377187 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030990 | RBH | 0.0 | 12.099663 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G031660 | RBH | 0.000000 | 2.911347 | 1.715941 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0031410 | RBH | 0.0 | 16.201029 | 2.783687 |
