Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0030470 | OGI:02082510 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:31094278-31095561 | ||||||||
| Gene Symbol | OsZHD7 | ||||||||||
| DNA seq | tcatgcatcatgctgctgctgctgctgctgatggtgttgtggtgggtggtggtggtgatggtggtggtggtggtggtgaggagggggaggaggagaaggatcgtggtggagcggcggcggcggcggctgcgatgtcggcgacgggggcgtcttggcgaggtgtttgttgttgtgcatccacaccttgaggacgcggcgggagacgccgacctgggcgcagaacgcgtcgacggcggcggcgtcgggcttgtggatgcgccacccgacgcggtgcgcgaattcacgcatccgctccttctgctccgccgtgaacttggtccggaagcgcttcttgctcggccccggcggcgcggaggccgacgccgccaccacggcggccgcgtgcgcgtgggggtgggaagaggggagcggcggcgggcgcagctcctcgcttgacgactcggccagcgcggcgggcgcagacgccggggacacggggaggacgggcgggcgcttctgcatgtgcggcggggcgaggaggagcggcatgagccgggaggagttggcgccggtgggcgtcgcggagggggatagggacaccaggccggcggcggcggaggcggaggcggaggcggggcagagcgagagcgaggccggcgcgacgaccgccggctcgcggcggtggaagctacggtggcagccgcacgcggcgcaggccagcgccgcggcgccgtcgccaggggacgacatgaactcgccgcagccgtcgagcacgtgcgcgcccatccgcgccgcgtggttcttgaggcactccctgtacctccacgtcggcgcctcgcccgccgccccctcgccgcctctcggaccaccaccaccaccacccacgagggcaagcgtagacgccgcgtgagcaccggcgacgccgccaagaacgccatttctcgccggctcatgatggcgctggagctggtgctggctctccccaccaggcgcctccacccttcttccctgcccatggtggtgagccgcatgcaggtaggatccaccgggcgccgccgccgccgccgccgacggcgacacgagcgacaggttgggaggcaggaggggcctcgagaaagcggcggagtccatcaacgacgacggcgaggaagccgacgagccaagaacctgcgggtgcagctgctgctgcgccgccaccgtcgtgtactgatggtgaccttgctcctcctcgtcttcctcctcgtcgtcctcctcttcttcctcctcttcctcctcctccacatgcgatgatctcttgtactccat
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| CDS seq | atggagtacaagagatcatcgcatgtggaggaggaggaagaggaggaagaagaggaggacgacgaggaggaagacgaggaggagcaaggtcaccatcagtacacgacggtggcggcgcagcagcagctgcacccgcaggttcttggctcgtcggcttcctcgccgtcgtcgttgatggactccgccgctttctcgaggcccctcctgcctcccaacctgtcgctcgtgtcgccgtcggcggcggcggcggcggcgcccggtggatcctacctgcatgcggctcaccaccatgggcagggaagaagggtggaggcgcctggtggggagagccagcaccagctccagcgccatcatgagccggcgagaaatggcgttcttggcggcgtcgccggtgctcacgcggcgtctacgcttgccctcgtgggtggtggtggtggtggtccgagaggcggcgagggggcggcgggcgaggcgccgacgtggaggtacagggagtgcctcaagaaccacgcggcgcggatgggcgcgcacgtgctcgacggctgcggcgagttcatgtcgtcccctggcgacggcgccgcggcgctggcctgcgccgcgtgcggctgccaccgtagcttccaccgccgcgagccggcggtcgtcgcgccggcctcgctctcgctctgccccgcctccgcctccgcctccgccgccgccggcctggtgtccctatccccctccgcgacgcccaccggcgccaactcctcccggctcatgccgctcctcctcgccccgccgcacatgcagaagcgcccgcccgtcctccccgtgtccccggcgtctgcgcccgccgcgctggccgagtcgtcaagcgaggagctgcgcccgccgccgctcccctcttcccacccccacgcgcacgcggccgccgtggtggcggcgtcggcctccgcgccgccggggccgagcaagaagcgcttccggaccaagttcacggcggagcagaaggagcggatgcgtgaattcgcgcaccgcgtcgggtggcgcatccacaagcccgacgccgccgccgtcgacgcgttctgcgcccaggtcggcgtctcccgccgcgtcctcaaggtgtggatgcacaacaacaaacacctcgccaagacgcccccgtcgccgacatcgcagccgccgccgccgccgctccaccacgatccttctcctcctccccctcctcaccaccaccaccaccaccatcaccaccaccacccaccacaacaccatcagcagcagcagcagcagcatgatgcatga
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| Protein seq | MEYKRSSHVEEEEEEEEEEDDEEEDEEEQGHHQYTTVAAQQQLHPQVLGSSASSPSSLMDSAAFSRPLLPPNLSLVSPSAAAAAAPGGSYLHAAHHHGQGRRVEAPGGESQHQLQRHHEPARNGVLGGVAGAHAASTLALVGGGGGGPRGGEGAAGEAPTWRYRECLKNHAARMGAHVLDGCGEFMSSPGDGAAALACAACGCHRSFHRREPAVVAPASLSLCPASASASAAAGLVSLSPSATPTGANSSRLMPLLLAPPHMQKRPPVLPVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASASAPPGPSKKRFRTKFTAEQKERMREFAHRVGWRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKHLAKTPPSPTSQPPPPPLHHDPSPPPPPHHHHHHHHHHHPPQHHQQQQQQHDA |
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| Function | Zinc-finger homeodomain protein 7 [UniProtKB/Swiss-Prot:Q8S3Q9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0030470 | OsLima_02g0030470.01 | Chr02 | 31094278 | 31095561 | - | NAM | ||
| CDS seq | atggagtacaagagatcatcgcatgtggaggaggaggaagaggaggaagaagaggaggacgacgaggaggaagacgaggaggagcaaggtcaccatcagtacacgacggtggcggcgcagcagcagctgcacccgcaggttcttggctcgtcggcttcctcgccgtcgtcgttgatggactccgccgctttctcgaggcccctcctgcctcccaacctgtcgctcgtgtcgccgtcggcggcggcggcggcggcgcccggtggatcctacctgcatgcggctcaccaccatgggcagggaagaagggtggaggcgcctggtggggagagccagcaccagctccagcgccatcatgagccggcgagaaatggcgttcttggcggcgtcgccggtgctcacgcggcgtctacgcttgccctcgtgggtggtggtggtggtggtccgagaggcggcgagggggcggcgggcgaggcgccgacgtggaggtacagggagtgcctcaagaaccacgcggcgcggatgggcgcgcacgtgctcgacggctgcggcgagttcatgtcgtcccctggcgacggcgccgcggcgctggcctgcgccgcgtgcggctgccaccgtagcttccaccgccgcgagccggcggtcgtcgcgccggcctcgctctcgctctgccccgcctccgcctccgcctccgccgccgccggcctggtgtccctatccccctccgcgacgcccaccggcgccaactcctcccggctcatgccgctcctcctcgccccgccgcacatgcagaagcgcccgcccgtcctccccgtgtccccggcgtctgcgcccgccgcgctggccgagtcgtcaagcgaggagctgcgcccgccgccgctcccctcttcccacccccacgcgcacgcggccgccgtggtggcggcgtcggcctccgcgccgccggggccgagcaagaagcgcttccggaccaagttcacggcggagcagaaggagcggatgcgtgaattcgcgcaccgcgtcgggtggcgcatccacaagcccgacgccgccgccgtcgacgcgttctgcgcccaggtcggcgtctcccgccgcgtcctcaaggtgtggatgcacaacaacaaacacctcgccaagacgcccccgtcgccgacatcgcagccgccgccgccgccgctccaccacgatccttctcctcctccccctcctcaccaccaccaccaccaccatcaccaccaccacccaccacaacaccatcagcagcagcagcagcagcatgatgcatga
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| Protein seq | MEYKRSSHVEEEEEEEEEEDDEEEDEEEQGHHQYTTVAAQQQLHPQVLGSSASSPSSLMDSAAFSRPLLPPNLSLVSPSAAAAAAPGGSYLHAAHHHGQGRRVEAPGGESQHQLQRHHEPARNGVLGGVAGAHAASTLALVGGGGGGPRGGEGAAGEAPTWRYRECLKNHAARMGAHVLDGCGEFMSSPGDGAAALACAACGCHRSFHRREPAVVAPASLSLCPASASASAAAGLVSLSPSATPTGANSSRLMPLLLAPPHMQKRPPVLPVSPASAPAALAESSSEELRPPPLPSSHPHAHAAAVVAASASAPPGPSKKRFRTKFTAEQKERMREFAHRVGWRIHKPDAAAVDAFCAQVGVSRRVLKVWMHNNKHLAKTPPSPTSQPPPPPLHHDPSPPPPPHHHHHHHHHHHPPQHHQQQQQQHDA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.008332 | 0.094633 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0706600 | RBH | 0.926465 | 0.151700 | 0.362746 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g47770 | RBH | 0.506826 | 0.140218 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0706600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0030650 | RBH | 0.0 | 0.0 | 2.017620 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030750 | RBH | 0.0 | 0.0 | 0.566106 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0030630 | RBH | 0.0 | 0.0 | 2.156084 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0030200 | RBH | 0.027653 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0030390 | RBH | 3.712929 | 0.0 | 0.585538 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0475800 | RBH | 2.1857265 | 0.4583275 | 10.2128375 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0030150 | RBH | 0.093306 | 0.098343 | 0.163138 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0503400 | RBH | 2.221533 | 0.4890435 | 34.185913 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0030220 | RBH | 0.051843 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0030590 | RBH | 2.482176 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0030410 | RBH | 0.182322 | 0.0 | 0.060536 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0030050 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G030670 | RBH | 0.006048 | 0.0 | 0.224046 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0030440 | RBH | 0.878976 | 0.0 | 1.547322 |
