Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0029820 | OGI:02080730 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:30531335-30536403 | ||||||||
| Gene Symbol | KAN1, OsKAN1, OsKAN2, KAN2, OsKANADI2, OsKANADI1 | ||||||||||
| DNA seq | ctctttttcacacaaacacactgcgcatacaaacacacactcctgtcctttccattccatctctctctctctctctctctctcctccctctcagctcgtctcctacctttcatccccctctctcctccatcttccaagcaagaactcctctctcttctcttctcttctttttcctcatcaatctcaattcccaacaagatcaagagcaagtacttgttcagccagctgcgcataaatatatattttttgtgacctctctgaagaagtggagttcttgagtcatcgcaaggacaagaagagatcatcaatggagctgttcccggcacaccctgacctgcagctccagatcagccctcctcctgccaccaagtcaatggacttagggttttggaaacgagctcttgaaacctccacgaccaccaccacggcggcggcggcggcaagtacaggtccttccgtcgctacttcctcctcgccgccggtagcgagtggcggggttggcggcggtgccggcggcttctaccagcaggcggccgtcgcgcctgcagctaacggccacggccatggccatggccatcaccaccaccaccaccaacatcaccagctcggcggcgcactccagttcttgcaccgcacccagcccatcccgccgcaggacgcggccgccggcggcggcctgcaggacctggcgttcgcgcggcccatccggggaatccccgtgtacaacacctcgcggccgctgcccttcctccagagccaccacctccagcaccaccagcattgctacgccgacacgatcggcgtcgcgccgggggccgggccgaggtcccccagcaagcaggcggcggcgctgcggctcgccgcggcgcccgccaagcgtggcgcccgcgcgccgcggatgcgatggacgacgtcgctgcacgcgcggttcgtccatgccgtcgagcttctcggaggccacgagagtacgcaaacctgcttgctgttttttttttcttttttttgcatcttccaaacttcttcatgttagctaaacaagaattgaaccacatatgctacgcagtgttcctgaattttttttcactaattttctccaattttggttttgcaggagctacacccaagtcagttcttgagctaatggacgtgaaggacctgaccttagctcatgtcaagtctcacttgcaggtgagtatatcatctaatccttcaagaccggttaattggttaatctgatatatatccggctgaattaagctttctatccctctctcagaaattaaaccattcgagtacttccttttctaataaagagtcgtaccagcgtagatgtacatctactcctaattaacaatttatatccacaccaaggagtactgtacaaaatacaaatacgtgcctggtatatatatggaagacattcatattatacactattcctttcctttatctgaggacaaaaagttaattacgttcgatcctttctcacacacagtagctcatgcatggaatagtcatttctcagttcacttgccggctgggcagtaaaaacatctctctctctacaagtttcactccccacatgcatgtccttggctagatagatagagagagagagagaagagagaaaagaggtgtaagcttagcttttgcaacacggggggagcagcttttcaataaaaactccgagatgagcagttggggcacaaagctatagcagcagcacatatgcaaacgcagcgtcagtgcagcgtgttgtttggccattaaaagctagccgcggcccggagacgagacgacatgcatgcacgcaccgcgcggaggatggatggatagatgcgtttctctcgctcgctcgctcgatcgatcgatctcgcacgcacgaagaggggatcgaaagggcattgatatgcatgctgcccaagagcagatcatgggcaagtacaaccacggcatcatttctcaataattaagcttcaacacacacgcaccccggcctctgcctgctttgagctgcaagctgcacgctgcacagtcgtagtggtagcagcagcagcagcagctgctgatcgagccatcaatgcctccgtttgtgctgtgtgcatgcaggcgaaaaatttatggtcatttctctctctccttgtactactcctaccactactgctcctttagtttttgttttttgtttttcttttcttttttgaagattgttacggaatagtagtccttaggagtactaatttgacttcatttataccagctctccatccatgaaatgcatgttatgcatttggaaaaaagaaacgtattatattcctcatataaaaaaaatcctatgtattcctgaagaatattggttaccccaacttcatgtaagtacatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatcaatgatatagctaattctccttgcagatgtaccggaccatcaagaccactgaccacaaacaacctgctccaccatatggtatgtgtgtatatataacactaatcacacacacacaaaaaaaaggggaagaagcatcataccgatcgatggtgtatttgatcaatactgaaacgttgcaaaaatatgttggatttgtagggcaaactaagactatcatagagatcccagacgacaatctgtttgacatcaacaacactagtgggtcagagtcttctgttcagcaacaatccaatcttgacggcaatgaacaaggatccagcatgtgtgctctacggagcaacaactcctcaaggtgacatacatgcaaacagaaattttaaagccattatttcttataaaactaattgctaaactttagtagttcctatgtttgcttcctaatgctactcctatatcatatgagagcctgctcctattccatttgatctcatcactctggtgacattggtcttaatatcaagctctagtagtagtagctagtgtactgaacctgaagctagtgcttcttgggccctagtattcgatgacaaactaaatgttcctaattaatgtagctattactggagtagttaacaacagctagcactgtagaagtactccaagccgaaggcgaattaacacagaaagcagctatatatagtcagctagctacttatgtctggaggtcaaggctgcttctggttacatgtagctagagactgctatattatgtacatgtagccaaaaagtaccacgcatagatacacagaaattaaatacatgtacagtacattagtactcctttggcgctttcactagctatatatatttgcctttgcatcttttttttctttaaaaaaaacaatgttcagaattcatgtatccatgaaaaaaaattactagcagtttactcacagcgcaatatttccactgtatatatatcttgatttggttggtctttcatgcatgggagtcgtgctggctagcttggcattacctgcatcaaacgtttggttggacttcaaactaaatattcctcaaaatcaactgttacattaagaatacattaagaaccagctaatgcaaggcttcagatattcttttggactgattaaaccagtcgtatgctcctactttaggcgaaacaatatattcctttgtctcattttctttgtgactactgcactaccatatcatcaaccacctccgagtgctcacaaaaagcaccagggctcatacctttgttccatctgctccccatgatggtgcaatcatctcccaaattataatattaagctagctccgagattgattagtatatatgctaattaagctatagcaaaggggacatatccccccccccccactacaagagacaatagagttctccactagcagaatcttgagaaactacatgagaaacagcatccatatctatagcctctcctgattatattttttgttctctctctttttttacatgatgtgcgatggaatcttttagaccgtggaatataatctcaataagaaatgaaaaaccgtaccaaactaagaatgcactcgggcatgcattcatataggcacactatacatatagctagatcagtacttgtggtgtcttgtggactgtgtgctcagtactgtatgtggtcagtacatgaaccttcctggcagctacatgtgtgagcaatatatatgcacagatatgaaggcattgttcaccgtgccagatcacatgggaggagcacgtagtctaagcatgcatgcacagcttttaccttggattagccaccctcttataaagttagcttgtcatttacagcatcttataacggtgaaattaaagtagggtgttagctttgttccctgccttttgttttctctcatctctagcaatggactcccactgagatgaaaaagagatatacatagatatataggcatttgattctctcagtccatgatacgctttttctctccagggtaatttaattaattcattcatttctctccttgcttaagcagtagaggggcctggttccatgacaaatcaagagatgctacccatggagacatcaaatccttcgaggtacccactttgcaagccaagtttcatcattgtctccaatacctctagctcactaatggccatgatgctacatgctagagttagtgcaatggcgatcattcctttgtttgatcacccctctcgattgattcattctttctttcatgcatctttcgacacagcttccttgctgagctttgatcaatgcatattgtcggcaggctctaactttagcttatatggggggccatcatatcatcagtttctgcacagttatcacatctcatcatcgtcatcgcaatcttttgttctttttatccctgcatgcactcatctaaccgagatcgtactacattatattgcaggacgtgcagtcacagagccctgaagacgacgacgcctccgacctgaactcgccgccgttccaaataccggagacgactgtcagcgccatgaaacccaacctcgacttcaccttgggaagaatgtaa
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| CDS seq | atggagctgttcccggcacaccctgacctgcagctccagatcagccctcctcctgccaccaagtcaatggacttagggttttggaaacgagctcttgaaacctccacgaccaccaccacggcggcggcggcggcaagtacaggtccttccgtcgctacttcctcctcgccgccggtagcgagtggcggggttggcggcggtgccggcggcttctaccagcaggcggccgtcgcgcctgcagctaacggccacggccatggccatggccatcaccaccaccaccaccaacatcaccagctcggcggcgcactccagttcttgcaccgcacccagcccatcccgccgcaggacgcggccgccggcggcggcctgcaggacctggcgttcgcgcggcccatccggggaatccccgtgtacaacacctcgcggccgctgcccttcctccagagccaccacctccagcaccaccagcattgctacgccgacacgatcggcgtcgcgccgggggccgggccgaggtcccccagcaagcaggcggcggcgctgcggctcgccgcggcgcccgccaagcgtggcgcccgcgcgccgcggatgcgatggacgacgtcgctgcacgcgcggttcgtccatgccgtcgagcttctcggaggccacgagagagctacacccaagtcagttcttgagctaatggacgtgaaggacctgaccttagctcatgtcaagtctcacttgcagatgtaccggaccatcaagaccactgaccacaaacaacctgctccaccatatgggcaaactaagactatcatagagatcccagacgacaatctgtttgacatcaacaacactagtgggtcagagtcttctgttcagcaacaatccaatcttgacggcaatgaacaaggatccagcatgtgtgctctacggagcaacaactcctcaagtagaggggcctggttccatgacaaatcaagagatgctacccatggagacatcaaatccttcgaggacgtgcagtcacagagccctgaagacgacgacgcctccgacctgaactcgccgccgttccaaataccggagacgactgtcagcgccatgaaacccaacctcgacttcaccttgggaagaatgtaa
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| Protein seq | MELFPAHPDLQLQISPPPATKSMDLGFWKRALETSTTTTTAAAAASTGPSVATSSSPPVASGGVGGGAGGFYQQAAVAPAANGHGHGHGHHHHHHQHHQLGGALQFLHRTQPIPPQDAAAGGGLQDLAFARPIRGIPVYNTSRPLPFLQSHHLQHHQHCYADTIGVAPGAGPRSPSKQAAALRLAAAPAKRGARAPRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTIKTTDHKQPAPPYGQTKTIIEIPDDNLFDINNTSGSESSVQQQSNLDGNEQGSSMCALRSNNSSSRGAWFHDKSRDATHGDIKSFEDVQSQSPEDDDASDLNSPPFQIPETTVSAMKPNLDFTLGRM |
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| Function | Probable transcription factor KAN3 [UniProtKB/Swiss-Prot:Q941I2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0029820 | OsLima_02g0029820.01 | Chr02 | 30531335 | 30536403 | + | NAM | ||
| CDS seq | atggagctgttcccggcacaccctgacctgcagctccagatcagccctcctcctgccaccaagtcaatggacttagggttttggaaacgagctcttgaaacctccacgaccaccaccacggcggcggcggcggcaagtacaggtccttccgtcgctacttcctcctcgccgccggtagcgagtggcggggttggcggcggtgccggcggcttctaccagcaggcggccgtcgcgcctgcagctaacggccacggccatggccatggccatcaccaccaccaccaccaacatcaccagctcggcggcgcactccagttcttgcaccgcacccagcccatcccgccgcaggacgcggccgccggcggcggcctgcaggacctggcgttcgcgcggcccatccggggaatccccgtgtacaacacctcgcggccgctgcccttcctccagagccaccacctccagcaccaccagcattgctacgccgacacgatcggcgtcgcgccgggggccgggccgaggtcccccagcaagcaggcggcggcgctgcggctcgccgcggcgcccgccaagcgtggcgcccgcgcgccgcggatgcgatggacgacgtcgctgcacgcgcggttcgtccatgccgtcgagcttctcggaggccacgagagagctacacccaagtcagttcttgagctaatggacgtgaaggacctgaccttagctcatgtcaagtctcacttgcagatgtaccggaccatcaagaccactgaccacaaacaacctgctccaccatatgggcaaactaagactatcatagagatcccagacgacaatctgtttgacatcaacaacactagtgggtcagagtcttctgttcagcaacaatccaatcttgacggcaatgaacaaggatccagcatgtgtgctctacggagcaacaactcctcaagtagaggggcctggttccatgacaaatcaagagatgctacccatggagacatcaaatccttcgaggacgtgcagtcacagagccctgaagacgacgacgcctccgacctgaactcgccgccgttccaaataccggagacgactgtcagcgccatgaaacccaacctcgacttcaccttgggaagaatgtaa
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| Protein seq | MELFPAHPDLQLQISPPPATKSMDLGFWKRALETSTTTTTAAAAASTGPSVATSSSPPVASGGVGGGAGGFYQQAAVAPAANGHGHGHGHHHHHHQHHQLGGALQFLHRTQPIPPQDAAAGGGLQDLAFARPIRGIPVYNTSRPLPFLQSHHLQHHQHCYADTIGVAPGAGPRSPSKQAAALRLAAAPAKRGARAPRMRWTTSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTIKTTDHKQPAPPYGQTKTIIEIPDDNLFDINNTSGSESSVQQQSNLDGNEQGSSMCALRSNNSSSRGAWFHDKSRDATHGDIKSFEDVQSQSPEDDDASDLNSPPFQIPETTVSAMKPNLDFTLGRM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0696900 | RBH | 0.674855 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g46940 | RBH | 0.393414 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0696900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029980 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0030050 | RBH | 0.077205 | 0.0 | 0.217183 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029910 | RBH | 1.024259 | 0.000000 | 1.145567 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0029510 | RBH | 0.051602 | 0.069416 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0029730 | RBH | 1.453937 | 0.0 | 3.135792 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0465900 | RBH | 1.529078 | 1.54855 | 1.747133 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0029530 | RBH | 0.266318 | 0.111387 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0493400 | RBH | 1.582423 | 0.78266 | 8.088222 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022930 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0029570 | RBH | 0.126667 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029880 | RBH | 1.631390 | 2.997218 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0029720 | RBH | 0.0 | 0.137028 | 0.223020 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0029400 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029970 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0029740 | RBH | 0.0 | 2.691988 | 0.539899 |
