Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0029050 | OGI:02078780 | 15/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:29810430-29811191 | ||||||||
| Gene Symbol | CCH, OsATX1, OsCCH, OsaCCH, ATX1, OsHMP14, HMP14 | ||||||||||
| DNA seq | tatcgtgcacatccatatccacgcgcacacgcagccggctggaaggaagaaaaaatgctgcggttctggaggacgcagaggagcatcacgtcgtcagacgccttgtctgtgagtaaaacatgtaaatgcaccgtcagaaggagatggagtactatacattttccatatgcatttctgagtgctgtttgtgtatgtgtgcctaagatcgtggagatgaacgtccacatggactgcgagggctgcgagaagcgcgtgaggaaggccatgtcccggctcgaaggtgccagtactgtttcgtgtgtgtaaaggatactccactacgtgtgtgtttcgtgtgtaaaatgcgtgcgtgcgtgcaggcgtgagcacggtggagatcgacatggacacgcagaaggtgacggtgacggggtacgtggaccggcgggaggtgctccgggcggcgcggcggacggggagggcggcggagttctggccgtggccgtacgacggcgagtactacccgttcgcgatccagtacctggaggacgacacctacatggcgacgcacaagtactacgtccacggctacaacgccccggtgatcggctcctaccccaaccacgccttcacccacatcgtcgacgaccacgccctcgccttcttccacgacgacaacgtccacgcctgctccatcatgtgacctaaaatataatcttatttaaaatcctacatgccagcgacagatacatatctgaccaaatcgaacaagctaagtgacct
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| CDS seq | atgaacgtccacatggactgcgagggctgcgagaagcgcgtgaggaaggccatgtcccggctcgaaggcgtgagcacggtggagatcgacatggacacgcagaaggtgacggtgacggggtacgtggaccggcgggaggtgctccgggcggcgcggcggacggggagggcggcggagttctggccgtggccgtacgacggcgagtactacccgttcgcgatccagtacctggaggacgacacctacatggcgacgcacaagtactacgtccacggctacaacgccccggtgatcggctcctaccccaaccacgccttcacccacatcgtcgacgaccacgccctcgccttcttccacgacgacaacgtccacgcctgctccatcatgtga |
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| Protein seq | MNVHMDCEGCEKRVRKAMSRLEGVSTVEIDMDTQKVTVTGYVDRREVLRAARRTGRAAEFWPWPYDGEYYPFAIQYLEDDTYMATHKYYVHGYNAPVIGSYPNHAFTHIVDDHALAFFHDDNVHACSIM |
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| Function | Heavy metal-associated isoprenylated plant protein 45 [UniProtKB/Swiss-Prot:B3H6D0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0029050 | OsLima_02g0029050.01 | Chr02 | 29810430 | 29811191 | + | NAM | ||
| CDS seq | atgaacgtccacatggactgcgagggctgcgagaagcgcgtgaggaaggccatgtcccggctcgaaggcgtgagcacggtggagatcgacatggacacgcagaaggtgacggtgacggggtacgtggaccggcgggaggtgctccgggcggcgcggcggacggggagggcggcggagttctggccgtggccgtacgacggcgagtactacccgttcgcgatccagtacctggaggacgacacctacatggcgacgcacaagtactacgtccacggctacaacgccccggtgatcggctcctaccccaaccacgccttcacccacatcgtcgacgaccacgccctcgccttcttccacgacgacaacgtccacgcctgctccatcatgtga
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| Protein seq | MNVHMDCEGCEKRVRKAMSRLEGVSTVEIDMDTQKVTVTGYVDRREVLRAARRTGRAAEFWPWPYDGEYYPFAIQYLEDDTYMATHKYYVHGYNAPVIGSYPNHAFTHIVDDHALAFFHDDNVHACSIM |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0530100 | SBH | 3.202925 | 2.920199 | 13.871611 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g32814 | SBH | 1.189844 | 0.571326 | 1.936702 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0530100 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029220 | RBH | 0.0 | 0.0 | 1.057012 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029280 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029150 | RBH | 0.0 | 0.000000 | 1.458974 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028740 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028920 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0454100 | RBH | 1.042341 | 0.0148315 | 0.0486145 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028720 | RBH | 0.0 | 0.0 | 0.308112 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0481900 | RBH | 0.3385335 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0023870 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0029070 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028940 | RBH | 0.0 | 0.0 | 0.467032 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028620 | RBH | 0.196777 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029190 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028960 | RBH | 0.0 | 0.0 | 0.000000 |
