Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0028900 | OGI:02078350 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:29617290-29622347 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tccgaaggctttcactccttaccgactgcagttatgcaaaaactgaaatgatatacatagacaatagtacacttggcctttttcatcatagagaacttacatggctagtgcacaactcacttttgcatccagaacttccaaggatcatacatgatacatggtgcataacacatgatttacatagtgctaagccgctttacagcactataatcagctcagctgaaacctcttcacacatatctcatcagatggactgatggagcattctgtttctggctatgccatgggtcacttggggcagtagtgccttctctgccagatgacagaaacgagaatgccatcaccagctgaactcaatggaggaaaaagggagcaaccagcaatccagcatcactcaaaatttcctttccatttcccattactaagaacagccttttaactagagaaagatttgcgcgccaaggcgaccgaggtattgggtgaggaaaactacacgcttcagggctaacatatatacacaattaggctattataccgctatagacagatctcacgtgtgcaagcctactgtacacggttgcacccttacacattctgcagttgaaggcttgaagcttagctagagatacaatgttgcaaagtgccttcctagtgcttcaccaagctccgaatgactgacgagctgaaattatcggtggagagacttctcagcaccttttagccagtttggccagggaagagacctcacactttctcagcactattcgcccttaatcctgtatttgttgcatgatcctcatttctctgtgaattatagacataaaaccaaaacaaaaggatgcaggccttacatgaatggagcacttaatggtctatcagctagaactgagcttctggtgcttcctagctcaagcccatcagacggggtactgtatgaagatagcaacttcctctataataaatttcataggacacaggttagttccttttttcagaagaacagacatatgctctaattgggtaatggaagcatactgaatgccataattgtgtagccttgtaaatgacatcctatttcaaattgctatgatgcacagcatgtccaacatactaaagaaagctatttttttcagtggtgagtaactcttttgaaaagaaaattcaatatggtatcaaccttttattattattattattattttggatgccctcatgcttcataatgttatggcttatatacatcatctcaattgtgtgttacaagagaagggctagaacttaagacctgctgtactggagaaaatttgatattggtacataccaaaaatttctgatagtttcaaaagtttgctaaaatatggtgactttgcacacattttctgatagctgcccatacattccagccattctgcacagacagtaccagaaaccatggcaaatgggcaaccctgctagaagcacagaatgtgaacacagacacctaagtccaataaggcatgaacttgcttctaaaatcatgtttagtttatccatatgaaagaaataaattatgatattgataaaatgaaggtgttaaaaatcagaaacgaatactcatcatacatgcatttatgggattttcagaactagttacctccaaaccacagtaaacaataactgttagcgtactacagcacatgcacaatgtggtgctaacattacctttcatatgtttccagaagtcaacaaaatatcacagagaaaaaggcaagtatggaaaatgcagcagacagaaaatgcttgaattctgttgcatggaacattttctgtaaaacaaacagcagtgaaccatacacaagcatgatccaaattctaaaggcatttttctttcttttgaaggaagtaatggcagtacacagccaaactgaattctagaggcatgctggagagctgcgtacctgatcttcaaaatcaggactagtcaaattgatggagagatttctcattaacaacaatgcctaaaggggagaaaaatggacacacgtcagttgaaatgtcgagtttgaaaattgcatgctaaggaaattatgaattaaatatgccttttgttggtttcaacaaagataacaaaacaatccaaaatgctgactaaaagcatacatattgcttgagtgaagtaccacaaagaacattctttatgcttatgtttcagttgtcttgacttgtcacatacaattatactttaactgagcagaacaaagcttatccatgattcacataccgtctcaacatcaattggattcatctcctttagtttctgtaaatggccacttgtgcttggatcgaaaacgctgcccaagaagctgtatacttgtgcaaaatctggcataactacattaaaagattaaaagttaacaatgccagtctgaaattttgaatcatgtaaataaagcattggttgaagacagaaacctcaatattgttactgatcaaatctatgaaaaaaaaatatctgtaaggtgccaggacctgggaatggactgtgctgtcgtgtaacactacttttcagttctaaaacacctcaagcagaatcagtaatttgttggtggtaattgttattctaaacaagtaaccaagtgttataaagattgaaacaaaacaagtgcacagagaggaagatcaaaacagaagccacagaaacaataaaaatgggcaatatgactcaaactgcagaaagataactatataaagaaaaatcttaagaggtactaacggcggagtgacggaacttgatttatctgatcattagtttcaccaggttgccatgccctcgcagggccttcagtactgctagagcaaaaattgttgggggccattgctccagcacctaaatcttctgagtgaaagaagataaggattaaaatcttctgagtgaaagaagataaggattaactgatggatattgcatttgaatttttataaggaagaggtaccacggacaacaaacctttcaccatggatgaggctacaattggtgggatagaattgtgtgtccatgacgaaacagtggcattcatgcctgagttcctaagcatggaagatgaatctgcctttatggtatatcctggctctgcaagatgagaatatatattgaagtaaatgttttgtgcagaggggggtactgttagtatcaaagatatatgtgttgggtgcgtgctgaacttatgagcatatgaggatctaccatttttggaggccttttgagggtatggatgagcagctttacgctttggtcgtggaggtgggacatgctcacttgttccattcttttgaaccttcaaaaaatacttctgtgcatggctcctaatctgcaaaatcaagttgagatggtaaacaaaaattatttcactggagagttgatcgtgtgcaatgtctgcaaatgttttattgtgagaagtggagaaaaggggtttgaacccatggacacaagcaccaacgcactgtgtattacaccacaaaaaaaggcattgtgtattagttgtttattataggtcaacatatatgacatatatcaacaaatcagggattcagttctgctaggtttgtgacgaaatttgatgccacaattccctttattcatttgccagaggatatccccttttccatttataatttgcccacctgaataacagtcttcgatccaacaaaagcttctatctttttccaatcacgatcaaagctgaaaagaagcaaggtattacacatgaatatcagatgtaaaaggacagtcctacaattgaatatcaaaccttttgtacagatacttgaattcaacagcaacaaatgcagtgtttttggtgcgccaaaacacattattggcaatcatatgcaaatagggggaccaatacgttggaagcatttcatagtaattatgattactaaaatgtccaataattcaggtgtgctcaaccaggtcaaagaaatatcaagtattatagcaccaaaagtccaaaactacgaagcagagaactgcaggatactgctgtactaatttgtgagttgtgaatttgtgacttttggctaattacgagagcaaatgctttgaggccttaaaatatccagtgggggtgctatacccggacaaatggcatcactagatgaacacaaagcacctcagtttgtaaatttgtgctattatttcaattcatataatctgcaaattttagtcaaaaaaaaataatctgcaaattggatccttagatttcctctttgcccaaaggttgtaccagtactactgattattgtccttgtgcacaacagcagcttatgaaattctgaaacacggcttcatctcagtacagacaagaaatctttaaaagatcccctgactaaaaaactctccatatgctactccaagaccaaatttaaaaacaaatgaacaaacaaacaagttttgttttttttacgtaaaacaagttaagtaagctattttgctactgttttatatcaataatacacaagacagcaaaaaaacatcggaacctaactaacgcatcacaagagctagaaaaacattcaatcttcacctcaaagaccgcacgattgcaaaattccgagcaaaaccacgcatcgagttgggtggcaaaagacggggtgaaattaaggaaaaaggcacggcagttccgcgattttgcttacagctggagggcctcaaggaacttgtcgtgctcctgctccgtccagctctcgcgcgacttggtgatggtgtacggcttccgcaccttcttgctggcgtcctccccagccgagcccgccgctgccgcggccgcgtcgggcggcggctggttggcggagaccatgggagcggagcgtgcgggcgctcggcgtaggcgtcggcgtcggcacggcggctcagagtctctggctctgcaggcgtggcgtgatggtgggtgggagtgtgtgggtggtggcgcagcggcggtgtggccgtgcgtttggtttggttggggaggggaggcggagagattgggaacggggaaggggacggcgtgcgctgggggggcttgtggctgcgcgggc
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| CDS seq | atggtctccgccaaccagccgccgcccgacgcggccgcggcagcggcgggctcggctggggaggacgccagcaagaaggtgcggaagccgtacaccatcaccaagtcgcgcgagagctggacggagcaggagcacgacaagttccttgaggccctccagctctttgatcgtgattggaaaaagatagaagcttttgttggatcgaagactgttattcagattaggagccatgcacagaagtattttttgaaggttcaaaagaatggaacaagtgagcatgtcccacctccacgaccaaagcgtaaagctgctcatccataccctcaaaaggcctccaaaaatgagccaggatataccataaaggcagattcatcttccatgcttaggaactcaggcatgaatgccactgtttcgtcatggacacacaattctatcccaccaattgtagcctcatccatggtgaaagaagatttaggtgctggagcaatggcccccaacaatttttgctctagcagtactgaaggccctgcgagggcatggcaacctggtgaaactaatgatcagataaatcaagttccgtcactccgccttatgccagattttgcacaagtatacagcttcttgggcagcgttttcgatccaagcacaagtggccatttacagaaactaaaggagatgaatccaattgatgttgagacggcattgttgttaatgagaaatctctccatcaatttgactagtcctgattttgaagatcagggttgcccatttgccatggtttctggtactgtctgtgcagaatggctggaatgtatgggcagctatcagaaaatgtgtgcaaagtcaccatattttagcaaacttttgaaactatcagaaatttttgaggaagttgctatcttcatacagtaccccgtctga
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| Protein seq | MVSANQPPPDAAAAAAGSAGEDASKKVRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNEPGYTIKADSSSMLRNSGMNATVSSWTHNSIPPIVASSMVKEDLGAGAMAPNNFCSSSTEGPARAWQPGETNDQINQVPSLRLMPDFAQVYSFLGSVFDPSTSGHLQKLKEMNPIDVETALLLMRNLSINLTSPDFEDQGCPFAMVSGTVCAEWLECMGSYQKMCAKSPYFSKLLKLSEIFEEVAIFIQYPV |
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| Function | Protein REVEILLE 6 [UniProtKB/Swiss-Prot:Q8H0W3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0028900 | OsLima_02g0028900.02 | Chr02 | 29617320 | 29622324 | - | NAM | ||
| CDS seq | atggtctccgccaaccagccgccgcccgacgcggccgcggcagcggcgggctcggctggggaggacgccagcaagaaggtgcggaagccgtacaccatcaccaagtcgcgcgagagctggacggagcaggagcacgacaagttccttgaggccctccagctctttgatcgtgattggaaaaagatagaagcttttgttggatcgaagactgttattcagattaggagccatgcacagaagtattttttgaaggttcaaaagaatggaacaagtgagcatgtcccacctccacgaccaaagcgtaaagctgctcatccataccctcaaaaggcctccaaaaatgagccaggatataccataaaggcagattcatcttccatgcttaggaactcaggcatgaatgccactgtttcgtcatggacacacaattctatcccaccaattgtagcctcatccatggtgaaagaagatttaggtgctggagcaatggcccccaacaatttttgctctagcagtactgaaggccctgcgagggcatggcaacctggtgaaactaatgatcagataaatcaagttccgtcactccgccttatgccagattttgcacaagtatacagcttcttgggcagcgttttcgatccaagcacaagtggccatttacagaaactaaaggagatgaatccaattgatgttgagacggcattgttgttaatgagaaatctctccatcaatttgactagtcctgattttgaagatcagggttgcccatttgccatggtttctggtactgtctgtgcagaatggctggaatgtatgggcagctatcagaaaatgtgtgcaaagtcaccatattttagcaaacttttgaaactatcagaaatttttgaggaagttgctatcttcatacagtaccccgtctga
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| Protein seq | MVSANQPPPDAAAAAAGSAGEDASKKVRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNEPGYTIKADSSSMLRNSGMNATVSSWTHNSIPPIVASSMVKEDLGAGAMAPNNFCSSSTEGPARAWQPGETNDQINQVPSLRLMPDFAQVYSFLGSVFDPSTSGHLQKLKEMNPIDVETALLLMRNLSINLTSPDFEDQGCPFAMVSGTVCAEWLECMGSYQKMCAKSPYFSKLLKLSEIFEEVAIFIQYPV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0028900 | OsLima_02g0028900.03 | Chr02 | 29617344 | 29622324 | - | NAM | ||
| CDS seq | atggtctccgccaaccagccgccgcccgacgcggccgcggcagcggcgggctcggctggggaggacgccagcaagaaggtgcggaagccgtacaccatcaccaagtcgcgcgagagctggacggagcaggagcacgacaagttccttgaggccctccagctctttgatcgtgattggaaaaagatagaagcttttgttggatcgaagactgttattcagtgcgttggtgcttgtgtccatgggttcaaaccccttttctccacttctcacaataaaacatttgcagacattgcacacgatcaactctccagtgaaataatttttgtttaccatctcaacttgattttgcagattaggagccatgcacagaagtattttttgaaggttcaaaagaatggaacaagtgagcatgtcccacctccacgaccaaagcgtaaagctgctcatccataccctcaaaaggcctccaaaaatgagccaggatataccataaaggcagattcatcttccatgcttaggaactcaggcatgaatgccactgtttcgtcatggacacacaattctatcccaccaattgtagcctcatccatggtgaaagttatgccagattttgcacaagtatacagcttcttgggcagcgttttcgatccaagcacaagtggccatttacagaaactaaaggagatgaatccaattgatgttgagacggcattgttgttaatgagaaatctctccatcaatttgactagtcctgattttgaagatcagaggaagttgctatcttcatacagtaccccgtctgatgggcttgagctaggaagcaccagaagctcagttctagctgatagaccattaagtgctccattcatgattaagggcgaatag
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| Protein seq | MVSANQPPPDAAAAAAGSAGEDASKKVRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQCVGACVHGFKPLFSTSHNKTFADIAHDQLSSEIIFVYHLNLILQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNEPGYTIKADSSSMLRNSGMNATVSSWTHNSIPPIVASSMVKVMPDFAQVYSFLGSVFDPSTSGHLQKLKEMNPIDVETALLLMRNLSINLTSPDFEDQRKLLSSYSTPSDGLELGSTRSSVLADRPLSAPFMIKGE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0028900 | OsLima_02g0028900.01 | Chr02 | 29617290 | 29622347 | - | NAM | ||
| CDS seq | atggtctccgccaaccagccgccgcccgacgcggccgcggcagcggcgggctcggctggggaggacgccagcaagaaggtgcggaagccgtacaccatcaccaagtcgcgcgagagctggacggagcaggagcacgacaagttccttgaggccctccagctctttgatcgtgattggaaaaagatagaagcttttgttggatcgaagactgttattcagattaggagccatgcacagaagtattttttgaaggttcaaaagaatggaacaagtgagcatgtcccacctccacgaccaaagcgtaaagctgctcatccataccctcaaaaggcctccaaaaatgagccaggatataccataaaggcagattcatcttccatgcttaggaactcaggcatgaatgccactgtttcgtcatggacacacaattctatcccaccaattgtagcctcatccatggtgaaagaagatttaggtgctggagcaatggcccccaacaatttttgctctagcagtactgaaggccctgcgagggcatggcaacctggtgaaactaatgatcagataaatcaagttccgtcactccgccttatgccagattttgcacaagtatacagcttcttgggcagcgttttcgatccaagcacaagtggccatttacagaaactaaaggagatgaatccaattgatgttgagacggcattgttgttaatgagaaatctctccatcaatttgactagtcctgattttgaagatcagaggaagttgctatcttcatacagtaccccgtctgatgggcttgagctaggaagcaccagaagctcagttctagctgatagaccattaagtgctccattcatgattaagggcgaatag
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| Protein seq | MVSANQPPPDAAAAAAGSAGEDASKKVRKPYTITKSRESWTEQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKNGTSEHVPPPRPKRKAAHPYPQKASKNEPGYTIKADSSSMLRNSGMNATVSSWTHNSIPPIVASSMVKEDLGAGAMAPNNFCSSSTEGPARAWQPGETNDQINQVPSLRLMPDFAQVYSFLGSVFDPSTSGHLQKLKEMNPIDVETALLLMRNLSINLTSPDFEDQRKLLSSYSTPSDGLELGSTRSSVLADRPLSAPFMIKGE
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0028900 | OsLima_02g0028900.04 | Chr02 | 29617346 | 29622273 | - | IsoSeq | ||
| CDS seq | aaccaaaccaaacgcacggccacaccgccgctgcgccaccacccacacactcccacccaccatcacgccacgcctgcagagccagagactctgagccgccgtgccgacgccgacgcctacgccgagcgcccgcacgctccgctcccatggtctccgccaaccagccgccgcccgacgcggccgcggcagcggcgggctcggctggggaggacgccagcaagaaggtgcggaagccgtacaccatcaccaagtcgcgcgagagctggacggagcaggagcacgacaagttccttgaggccctccagctctttgatcgtgattggaaaa
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| Protein seq | NQTKRTATPPLRHHPHTPTHHHATPAEPETLSRRADADAYAERPHAPLPWSPPTSRRPTRPRQRRARLGRTPARRCGSRTPSPSRARAGRSRSTTSSLRPSSSLIVIGK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 29620636 | 29620950 | - | OsLima_02g0028900.03 | OsLima_02g0028900.02,OsLima_02g0028900.03,OsLima_02g0028900.01,OsLima_02g0028900.04 | All |
| RI | Chr02 | 29618141 | 29619286 | - | OsLima_02g0028900.04 | OsLima_02g0028900.03,OsLima_02g0028900.01,OsLima_02g0028900.04 | All |
| SE | Chr02 | 29619659 | 29620276 | - | OsLima_02g0028900.01,OsLima_02g0028900.02,OsLima_02g0028900.04 | OsLima_02g0028900.02,OsLima_02g0028900.03,OsLima_02g0028900.01,OsLima_02g0028900.04 | All |
| SE | Chr02 | 29618241 | 29619227 | - | OsLima_02g0028900.02 | OsLima_02g0028900.03,OsLima_02g0028900.01,OsLima_02g0028900.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.855919 | 0.273618 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0680700 | RBH | 4.712424 | 5.827011 | 2.280817 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g45670 | RBH | 3.133257 | 3.871741 | 0.577264 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0680700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0029080 | RBH | 0.685614 | 6.260627 | 5.562801 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0029140 | RBH | 0.957512 | 1.786132 | 1.472176 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0029010 | RBH | 0.967626 | 0.0 | 5.075172 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0028600 | RBH | 0.173918 | 0.175389 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0028750 | RBH | 21.481562 | 2.490517 | 18.171141 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0450900 | RBH | 6.188142 | 7.1865 | 5.84248 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0028560 | RBH | 0.432048 | 0.111824 | 3.676176 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0478700 | RBH | 15.633071 | 10.516634 | 5.9019405 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0024030 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0028610 | RBH | 1.856595 | 8.762731 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0028900 | RBH | 23.685432 | 5.463559 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0028770 | RBH | 1.091264 | 0.857106 | 3.937919 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0028440 | RBH | 0.279026 | 1.215626 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G029030 | RBH | 0.503302 | 0.0 | 3.035397 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0028800 | RBH | 5.426544 | 1.076643 | 8.360101 |
