Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0027720 | OGI:02075920 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:28599167-28601812 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gcgagaccaactaccaatcaaccaactaaccgaacagcgcgcgcaagagatgaagcggaaagctagcagcagcagcagcccagattgcccacgactcaaactcccaatccccaaccaatcgcctataatccttagtatagttagtttattccaacccgaattccaacctcccaagaattcaatctcttgttccgtttcgcttcttttaattcaagattgaatcaattacatagcgtgtttgcttgtcgttgatgctttgcttcctggaggaggaaacgcccgcacacgccgccgaacacctctccgtttccttggatctttcagcttcctgttcctcacgagatcgagaaggggggaaaaagaaaacgtcggtttttagtctcgtttgcctcgatcctctcgttcttggttggtcggcgccatgagtaacaccctgcttcgaatctacccttccgagctgaagataccctgtgagtgcttcgacgacctgtcctttgttgttcttgctgtttcttgattgtttaggactgattcagatcgcctctgtttcgatgctctgatgagcagtcgagctcaacaggcagaattcggggatcctggagctcacgaataagaccgatcatcatgtagccttcaaggtgaacacaagttgacagttttttctttgtcagaattgctgtaacctgattacgttgagttgactgaatgtctgaatttcttgggtactggttgctcgatctgcaggtgaaaacgacgaaccctaggaagtactcggtgagaccaaccaccggaatcgttctgcccagagggtcttgcggaatcacaagttcgtcttgcttcctctgctgctgtacattgcccaactgatcagttcatcgtgtttataaacgcattgctgttcttgctctgaaaaatcgttgcagtatctatgcaaccgccgaaggagatccctacggattatcactgcaaggacaagtttctcatccaaagcgtcgtggtagaggatggcacaacgcagaaggacattcacagtgacatggtaaaatcctgcagtctcaatcgagttcatagatgctgattgatttatgagtgatgtactaaatgttaaatgttgcggtttgtagttcagtaaagaggcaggcaaggtggtcgaggagttcaagctgagggtggtctacatccctgccaatcctccctcccctgtgccagaggaagaagaggatgagattgattcccttgattcagatgtggaccatgaagtgcaaatgccatctacgttcgatgctgttagtactgacattgttgtttatatcaaaataacaatgatgatatgcttgttcctaatgataatttatttatgttcaggcatcaaggaagggatatacatctggatcgcaagcttcacatgacgaggttattatctttaagcatcgctcgttggcagaatattccttagagcttactattgaactagacattaaagatcataaacacgtactccctccgtttcacaatataagtcattctagcatatcccacattcatattgatgttaatgaatctagacatatatatctatctagattcattaacatcaatataaatgtgagaaatgctagatatatgtctagattcattaacatcaatatgaatatgggaaatgctagaatgacttacattgtgaaacagaggaagtagtagtttgttgatttgttcagtataggaattctactgttctaaacaactaacacccagcattttaattgcattgctaacattcttgattgtttcgtggttctttagggcgtctctttgaccaaagctgtattgagtaaatatgtagatgaaaaccagaagcttcaacaagaactggtatggattttctttagataagaatttggagaaaattaatactttcaatgttttaaaaatgaactgaccgtttaattcgcttcaacttctccataattgaataattgagtgattcgtatgaaattattttttcttgctacctttaatgaggttcatatcatgatatttgttacgagacattgctccctttcgatagttcttttttacttaaccttttttgcatacaacatatcgtaaatttacaacatctgcgtgcaaaagcaccagatccaccaaaagaaaagagaagcaagactagggcagatcaattacttaaccccaagttgatctattgcaggatcttcttaagaagaaaaggtcatcatccgatgggggtttcacagctctgtttgtgccttttgtctttgcgttcttcgtcttcattggatacttaatggcgggaagcaatgtttagccagaatagctgcaaaacatacgcatcgttttgcagaattttgtccctctggctgatcaattctttctgtttctcttggtagaaatatatttcttcattataggtggttgtcttccgttcttgtgaagtataatatacctcttaaagaatgggagagaaccattcattgtagatagacaaataggcgttctatctctgaattgttcatatataataaacctctggttcattatacacacacgtttgcttgtaaatgtggttgagtgtaaatttgacctgcagtatggtcctgggtgagttccagaatcctttcacagagt
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| CDS seq | atgagtaacaccctgcttcgaatctacccttccgagctgaagataccctcagtcgagctcaacaggcagaattcggggatcctggagctcacgaataagaccgatcatcatgtagccttcaaggtgaaaacgacgaaccctaggaagtactcggtgagaccaaccaccggaatcgttctgcccagagggtcttgcggaatcacaatatctatgcaaccgccgaaggagatccctacggattatcactgcaaggacaagtttctcatccaaagcgtcgtggtagaggatggcacaacgcagaaggacattcacagtgacatgttcagtaaagaggcaggcaaggtggtcgaggagttcaagctgagggtggtctacatccctgccaatcctccctcccctgtgccagaggaagaagaggatgagattgattcccttgattcagatgtggaccatgaagtgcaaatgccatctacgttcgatgctggcgtctctttgaccaaagctgtattgagtaaatatgtagatgaaaaccagaagcttcaacaagaactggatcttcttaagaagaaaaggtcatcatccgatgggggtttcacagctctgtttgtgccttttgtctttgcgttcttcgtcttcattggatacttaatggcgggaagcaatgtttag
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| Protein seq | MSNTLLRIYPSELKIPSVELNRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGSCGITISMQPPKEIPTDYHCKDKFLIQSVVVEDGTTQKDIHSDMFSKEAGKVVEEFKLRVVYIPANPPSPVPEEEEDEIDSLDSDVDHEVQMPSTFDAGVSLTKAVLSKYVDENQKLQQELDLLKKKRSSSDGGFTALFVPFVFAFFVFIGYLMAGSNV |
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| Function | Vesicle-associated protein 1-3 [UniProtKB/Swiss-Prot:Q84WW5] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0027720 | OsLima_02g0027720.03 | Chr02 | 28599167 | 28601743 | + | NAM | ||
| CDS seq | atgagtaacaccctgcttcgaatctacccttccgagctgaagataccctcagtcgagctcaacaggcagaattcggggatcctggagctcacgaataagaccgatcatcatgtagccttcaaggtgaaaacgacgaaccctaggaagtactcggtgagaccaaccaccggaatcgttctgcccagagggtcttgcggaatcacaagttcgtcttgcttcctctgctgctgtacattgcccaactga
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| Protein seq | MSNTLLRIYPSELKIPSVELNRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGSCGITSSSCFLCCCTLPN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0027720 | OsLima_02g0027720.02 | Chr02 | 28599167 | 28601812 | + | NAM | ||
| CDS seq | atgagtaacaccctgcttcgaatctacccttccgagctgaagataccctcagtcgagctcaacaggcagaattcggggatcctggagctcacgaataagaccgatcatcatgtagccttcaaggtgaaaacgacgaaccctaggaagtactcggtgagaccaaccaccggaatcgttctgcccagagggtcttgcggaatcacaatatctatgcaaccgccgaaggagatccctacggattatcactgcaaggacaagtttctcatccaaagcgtcgtggtagaggatggcacaacgcagaaggacattcacagtgacatgttcagtaaagaggcaggcaaggtggtcgaggagttcaagctgagggtggtctacatccctgccaatcctccctcccctgtgccagaggaagaagaggatgagattgattcccttgattcagatgtggaccatgaagtgcaaatgccatctacgttcgatgctggcgtctctttgaccaaagctgtattgagtaaatatgtagatgaaaaccagaagcttcaacaagaactggatcttcttaagaagaaaaggtcatcatccgatgggggtttcacagctctgtttgtgccttttgtctttgcgttcttcgtcttcattggatacttaatggcgggaagcaatgtttag
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| Protein seq | MSNTLLRIYPSELKIPSVELNRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGSCGITISMQPPKEIPTDYHCKDKFLIQSVVVEDGTTQKDIHSDMFSKEAGKVVEEFKLRVVYIPANPPSPVPEEEEDEIDSLDSDVDHEVQMPSTFDAGVSLTKAVLSKYVDENQKLQQELDLLKKKRSSSDGGFTALFVPFVFAFFVFIGYLMAGSNV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0027720 | OsLima_02g0027720.01 | Chr02 | 28599167 | 28601812 | + | NAM | ||
| CDS seq | atgagtaacaccctgcttcgaatctacccttccgagctgaagatacccttcgagctcaacaggcagaattcggggatcctggagctcacgaataagaccgatcatcatgtagccttcaaggtgaaaacgacgaaccctaggaagtactcggtgagaccaaccaccggaatcgttctgcccagagggtcttgcggaatcacaatatctatgcaaccgccgaaggagatccctacggattatcactgcaaggacaagtttctcatccaaagcgtcgtggtagaggatggcacaacgcagaaggacattcacagtgacatgttcagtaaagaggcaggcaaggtggtcgaggagttcaagctgagggtggtctacatccctgccaatcctccctcccctgtgccagaggaagaagaggatgagattgattcccttgattcagatgtggaccatgaagtgcaaatgccatctacgttcgatgctggcgtctctttgaccaaagctgtattgagtaaatatgtagatgaaaaccagaagcttcaacaagaactggatcttcttaagaagaaaaggtcatcatccgatgggggtttcacagctctgtttgtgccttttgtctttgcgttcttcgtcttcattggatacttaatggcgggaagcaatgtttag
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| Protein seq | MSNTLLRIYPSELKIPFELNRQNSGILELTNKTDHHVAFKVKTTNPRKYSVRPTTGIVLPRGSCGITISMQPPKEIPTDYHCKDKFLIQSVVVEDGTTQKDIHSDMFSKEAGKVVEEFKLRVVYIPANPPSPVPEEEEDEIDSLDSDVDHEVQMPSTFDAGVSLTKAVLSKYVDENQKLQQELDLLKKKRSSSDGGFTALFVPFVFAFFVFIGYLMAGSNV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr02 | 28599636 | 28599734 | + | OsLima_02g0027720.03,OsLima_02g0027720.02 | OsLima_02g0027720.02,OsLima_02g0027720.01,OsLima_02g0027720.03 | All |
| RI | Chr02 | 28599911 | 28600205 | + | OsLima_02g0027720.03 | OsLima_02g0027720.02,OsLima_02g0027720.01,OsLima_02g0027720.03 | All |
| SE | Chr02 | 28600452 | 28600970 | + | OsLima_02g0027720.03 | OsLima_02g0027720.02,OsLima_02g0027720.01,OsLima_02g0027720.03 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.057991 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0661900 | RBH | 1.428328 | 1.717078 | 1.554188 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g44300 | RBH | 0.905631 | 1.081584 | 0.384227 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0661900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027930 | RBH | 0.652963 | 10.071444 | 2.618628 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0028030 | RBH | 0.0 | 1.420622 | 2.356525 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027870 | RBH | 3.819650 | 13.467913 | 6.575751 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0027480 | RBH | 0.334562 | 0.592780 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0027590 | RBH | 2.841081 | 6.202607 | 3.821136 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0435700 | RBH | 2.8668445 | 12.208665 | 1.081479 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027390 | RBH | 0.745942 | 0.825444 | 0.067606 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0463700 | RBH | 5.657105 | 28.285778 | 3.9264215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0022070 | RBH | 0.067080 | 0.098388 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0027410 | RBH | 0.110489 | 1.640714 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027760 | RBH | 0.0 | 4.860214 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0027600 | RBH | 1.834879 | 0.130953 | 0.338815 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0027290 | RBH | 1.491848 | 5.893211 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027880 | RBH | 1.001299 | 5.832602 | 1.438079 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027650 | RBH | 0.000000 | 22.085302 | 1.707291 |
