Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0027360 | OGI:02074930 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:28303851-28307061 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gtgggagcatcgtaatctctacagtaactttagtttcatggcgtctggaggaggaacattccagttcacatggagtgtttcgatgcattaaatgtacaacatatacatttcactaacagtgtgttatacagttcttcaggggcactggcctatgaacagcagttctacattttttttttcggttccaggtaatgcacaagaaaaacacagtgatcctgcatctgaagcacccctccagcatgtatgttactctgagttcatgtcaaggctattcagttccctggccagcacaaattcagcaggtttctagccttggccaggctgaaatgcctcagtactcgtcattgctgtatatgctgctataatgcaatgccgattaaatagcaagccggtaaactacccagtttaatttattttgcaatctcttcgagctttttgagtataaactttgtgttaggtctcaatgatggtgaagggctacagcaagctgttgccaactcgaagaaagcattcaaattcttttccttccctgacttcttgctctgcctgacaagatcggagctgaatgcatcagaaatcttcctctcaagaaccaaatttttgaacgagacaggcaataggatgtcgcgagggtttggcgtgttatcctttgctgattccttctgggcaagcatctcaagcagaactactcccaagctgtagatatcagtctctctagtggcatctctcatcttgatcagctcaggtgccttgtaaccctgtgctgctgaagtttcaagcatctcctgggcaccagcaggattcagcagaaggtagaggccaaagtctgatatcttgcactcataattagcatcgagcagaatgttgttcgtcttgatgttcccgtgaattatcggtttctccaaccctgtatgcaggtaatccagtcccttgacaatactgatagagagcttgcaaattatattccatctttgtgaatcaacaattccctctgttttcggtagcaacagaaaaacattgcatggttagcaactatcacaatgaatgccagaagatgcctaataacaactttattgacaaataatgttatccaaaattcagccatcaattaatatggtgaattttcatccacaagcccaacactacataataaactgacagtttaactaaatttattgaagatctaggttcaatgatcgaaaaagaaaaggaagatgaaatgcagtggtttgaaagtaagccattgctagtacaaaattctgggagttaacttgaaatatcaaatatgtaaatgtgtgctcttctcttcaatcaagaggcaacaatacttgtatctaaaggacctttctacaaaagcctgactgattaattgaacacgggaaacttgttatatcctaatgattatggtagttaagggttaattaatgacttcaacaaacataaggagtcaggaccatgtcaccagtacacagtgctatgtcatgtttcaagctaaacaagagttgacaaaatactttttgcaatcagcaattatagcaaggcatagattagaattaacaccataggtccatagctatgaggttccgagcatgactatcttctccattccacttggactcaaatcactcaaaattgagagtttgagaccaattgccctactggttttcttatgtcttcaaactctcttagaaacttcactatgccttttgcattacaacaaattcttgacagatctgttgcaggcttgcagcttacaggtataattcatatccagctatattctccatgctcatgtgagtttttaacattttaaaaacgctgttactaatttaaaacggaattcccctaaaaaattaaaatggagttgaactacctcttttacaacaaaaagttacatttttttaaaaaaaaatcacgtagctaatttacactgcactttcacaatggtggataactagatacagaagatgagatacgtgcattgcagcctgcgtgcttttgatgctactctgcagtgcagagatgactactctaatatcgcagcattgccatcattgcctaacatttcggggtgtaagatctcttctcctaaaactctgaccttgatccccatactcgaatagtataatcagtcacagtaaattatacttcgaacattgaaaattttggaacgtaacaagattactacgcaaagaagagctaaaaactgcaaaaggatacgagagaacagataaaatgctccacatttgttaccaagaaactaacaacaaggcaagtaaaataagcagagatgcagaccaaccttgcaagaatcgccggagcgagccggcggcgtagaaggggtgcacgagcagcttctcccccctcggcccgacgtagaacgcgcggagcggcacgaggttcgggtggctgaccgcgccgatccggcgcgcggcggcggaggcctcgtcggaggtgagcgcgcacgcgggccgcacgaaccggagcagcacggcggcctccccggagcgcatcgcggcgcggtacagggtgctgtgcgacgacttggccaccacctcccccggcgcctcgaggatggcggcgacggagagcgcctccccgccggggaacttgacgagcgcgtccgccctgccgtacgcccctgcgccgacgccgccctgcgcgcccaccccgaggcggtcggcgatgggggccaggtacggctgcagcgcgccgaggcggtcggcgatcggcgcgaagtaggggagcatggtgttggccgtcctgctccggcggaggcacgccgggaggcgggacgtgaggcggtcgagccgcaggccgcggaggcgcggccggaggtaccggtacagcaggtagacgagaaggatcccgaggatggggagcaggatggagttgctcctccccttcgcctccggctcgtcccccggtggcgccgtcgccgccgtcgactccgccattgctcctatctcccagtactcctcctcctttctcctggataaaacggaagaagccaatggcggtgggtcaccttgccttgccttgccgtgcttgctccgcacagtttgcttgctcgctttttcccctcgggtggagggaagaggcagcggcgaggggagggtggcttgagattcttgtcgtctcgaggcttgtttctttatcactgtgggagtgagacgacgagtgtgtgtatgtgtgtgatggcttacagtcc
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| CDS seq | atggcggagtcgacggcggcgacggcgccaccgggggacgagccggaggcgaaggggaggagcaactccatcctgctccccatcctcgggatccttctcgtctacctgctgtaccggtacctccggccgcgcctccgcggcctgcggctcgaccgcctcacgtcccgcctcccggcgtgcctccgccggagcaggacggccaacaccatgctcccctacttcgcgccgatcgccgaccgcctcggcgcgctgcagccgtacctggcccccatcgccgaccgcctcggggtgggcgcgcagggcggcgtcggcgcaggggcgtacggcagggcggacgcgctcgtcaagttccccggcggggaggcgctctccgtcgccgccatcctcgaggcgccgggggaggtggtggccaagtcgtcgcacagcaccctgtaccgcgccgcgatgcgctccggggaggccgccgtgctgctccggttcgtgcggcccgcgtgcgcgctcacctccgacgaggcctccgccgccgcgcgccggatcggcgcggtcagccacccgaacctcgtgccgctccgcgcgttctacgtcgggccgaggggggagaagctgctcgtgcaccccttctacgccgccggctcgctccggcgattcttgcaagagggaattgttgattcacaaagatggaatataatttgcaagctctctatcagtattgtcaagggactggattacctgcatacagggttggagaaaccgataattcacgggaacatcaagacgaacaacattctgctcgatgctaattatgagtgcaagatatcagactttggcctctaccttctgctgaatcctgctggtgcccaggagatgcttgaaacttcagcagcacagggttacaaggcacctgagctgatcaagatgagagatgccactagagagactgatatctacagcttgggagtagttctgcttgagatgcttgcccagaaggaatcagcaaaggataacacgccaaaccctcgcgacatcctattgcctgtctcgttcaaaaatttggttcttgagaggaagatttctgatgcattcagctccgatcttgtcaggcagagcaagaagtcagggaaggaaaagaatttgaatgctttcttcgagttggcaacagcttgctgtagcccttcaccatcattgagacctaacacaaagtttatactcaaaaagctcgaagagattgcaaaataa
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| Protein seq | MAESTAATAPPGDEPEAKGRSNSILLPILGILLVYLLYRYLRPRLRGLRLDRLTSRLPACLRRSRTANTMLPYFAPIADRLGALQPYLAPIADRLGVGAQGGVGAGAYGRADALVKFPGGEALSVAAILEAPGEVVAKSSHSTLYRAAMRSGEAAVLLRFVRPACALTSDEASAAARRIGAVSHPNLVPLRAFYVGPRGEKLLVHPFYAAGSLRRFLQEGIVDSQRWNIICKLSISIVKGLDYLHTGLEKPIIHGNIKTNNILLDANYECKISDFGLYLLLNPAGAQEMLETSAAQGYKAPELIKMRDATRETDIYSLGVVLLEMLAQKESAKDNTPNPRDILLPVSFKNLVLERKISDAFSSDLVRQSKKSGKEKNLNAFFELATACCSPSPSLRPNTKFILKKLEEIAK |
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| Function | Putative kinase-like protein TMKL1 [UniProtKB/Swiss-Prot:P33543] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0027360 | OsLima_02g0027360.01 | Chr02 | 28303851 | 28307061 | - | NAM | ||
| CDS seq | atggcggagtcgacggcggcgacggcgccaccgggggacgagccggaggcgaaggggaggagcaactccatcctgctccccatcctcgggatccttctcgtctacctgctgtaccggtacctccggccgcgcctccgcggcctgcggctcgaccgcctcacgtcccgcctcccggcgtgcctccgccggagcaggacggccaacaccatgctcccctacttcgcgccgatcgccgaccgcctcggcgcgctgcagccgtacctggcccccatcgccgaccgcctcggggtgggcgcgcagggcggcgtcggcgcaggggcgtacggcagggcggacgcgctcgtcaagttccccggcggggaggcgctctccgtcgccgccatcctcgaggcgccgggggaggtggtggccaagtcgtcgcacagcaccctgtaccgcgccgcgatgcgctccggggaggccgccgtgctgctccggttcgtgcggcccgcgtgcgcgctcacctccgacgaggcctccgccgccgcgcgccggatcggcgcggtcagccacccgaacctcgtgccgctccgcgcgttctacgtcgggccgaggggggagaagctgctcgtgcaccccttctacgccgccggctcgctccggcgattcttgcaagagggaattgttgattcacaaagatggaatataatttgcaagctctctatcagtattgtcaagggactggattacctgcatacagggttggagaaaccgataattcacgggaacatcaagacgaacaacattctgctcgatgctaattatgagtgcaagatatcagactttggcctctaccttctgctgaatcctgctggtgcccaggagatgcttgaaacttcagcagcacagggttacaaggcacctgagctgatcaagatgagagatgccactagagagactgatatctacagcttgggagtagttctgcttgagatgcttgcccagaaggaatcagcaaaggataacacgccaaaccctcgcgacatcctattgcctgtctcgttcaaaaatttggttcttgagaggaagatttctgatgcattcagctccgatcttgtcaggcagagcaagaagtcagggaaggaaaagaatttgaatgctttcttcgagttggcaacagcttgctgtagcccttcaccatcattgagacctaacacaaagtttatactcaaaaagctcgaagagattgcaaaataa
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| Protein seq | MAESTAATAPPGDEPEAKGRSNSILLPILGILLVYLLYRYLRPRLRGLRLDRLTSRLPACLRRSRTANTMLPYFAPIADRLGALQPYLAPIADRLGVGAQGGVGAGAYGRADALVKFPGGEALSVAAILEAPGEVVAKSSHSTLYRAAMRSGEAAVLLRFVRPACALTSDEASAAARRIGAVSHPNLVPLRAFYVGPRGEKLLVHPFYAAGSLRRFLQEGIVDSQRWNIICKLSISIVKGLDYLHTGLEKPIIHGNIKTNNILLDANYECKISDFGLYLLLNPAGAQEMLETSAAQGYKAPELIKMRDATRETDIYSLGVVLLEMLAQKESAKDNTPNPRDILLPVSFKNLVLERKISDAFSSDLVRQSKKSGKEKNLNAFFELATACCSPSPSLRPNTKFILKKLEEIAK
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.447030 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0655800 | RBH | 0.444189 | 0.692838 | 4.371552 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43870 | RBH | 0.301964 | 0.434121 | 1.131242 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0655800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027550 | RBH | 0.0 | 2.746347 | 6.398977 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027650 | RBH | 0.000000 | 3.111143 | 1.505132 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027500 | RBH | 0.0 | 8.196978 | 10.149676 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0027100 | RBH | 0.0 | 0.423329 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0027220 | RBH | 2.193589 | 15.836916 | 14.842982 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0430900 | RBH | 9.011662 | 13.793441 | 4.868662 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0027030 | RBH | 0.000000 | 0.880193 | 0.354708 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0458600 | RBH | 9.780046 | 3.491247 | 16.1458945 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021710 | RBH | 0.114635 | 0.164482 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0027040 | RBH | 0.194044 | 8.034671 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027410 | RBH | 0.0 | 40.950047 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0027240 | RBH | 0.387732 | 1.284527 | 1.338810 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026940 | RBH | 0.0 | 4.163871 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027530 | RBH | 0.0 | 3.234884 | 5.705458 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0027270 | RBH | 0.0 | 7.036561 | 4.690741 |
