Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0027080 | OGI:02074290 | 16/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:28100879-28103194 | ||||||||
| Gene Symbol | CYCU4;4, CycU4;4, CycU4;os;4, Orysa;CycU4;4, OsCYCP4;2 | ||||||||||
| DNA seq | cacttccaagattgaaaattactttttccatcaaaatttacataggatcaaattgcataaatgtttcactgatctacaccattagtacacaccgaaacaaaaaaagaaaaaaagaaaaagaacaaaggagtgcacagcaagaatgcactgctgtacgcatcatgcaggaggagagggcgatcgaccacctattggctactatagctagcaggctaactaaactaatcaaagcaactgccacactaactaatactccagcacgtaggacagatcacgacatgtatgtacgcagtgtgacatgctagcttgcttccatggccgcttcacgcagcgagctgctgctgctgctgccggcatcgtcctcggacaggcagcagtagtgcagcctcgtcggcggcgccgccgcgcagagcatctcggactggagcacggcgcagtagtcggcgaacgtctccggcgtcacgttcaggtcgaaccctacgccgaacaggaagtccacctcgaggtagttcatctccgccaggctgatgcccccgaccttggcgaagtaggcgttgttgtagcatctgaatatatatatacagatcgatcgatcatgtcaaaagtcaaaacaattcggctgttaatcttttcagacaaaaagaaattaatgacagtattattgtatattgcctgtatgctccgtccattctttcagatcgtttatgattgctctccaatgattgacggcacaatcaccagtagcatcgaagggatcgatcaagcgaccgaacaaaatcgcaaccacaaatcaccgaattggcaccaaacgggctcattcagtacgccaagttggcaattaagtattgtcacagtagtgtcgctcttactcttaagaaaaagctagaaaaaagagatgctcccgatgaggccctgacacggggaaattgagctgcaaacatcagcagcaagggcaagttgccagtcccaatcccccacaactggcactgaattaaattccaaacaaaaaggcgagggggtccttgtgcagggtggaattctggtttgtgttcttgggtccacggtggatgtgtgtggttggacgcaaggaatagtgaaatgataccacctcatttttttttgctttgctggacaagcataattctgtccatgtactgcgtttgtttgcgtggacaaatcactttgggtacccggtgcaaagcctagttttgacagcaaagttgaggtggaaacctttcccagtggcttctttggagcatgattaccgacaagtaatagctggtggttgctgtgatattcagatgtaactatttcggaggttctctttgccttccgtttcaagactgtaaggaaaaactcattttggaattgtaaaaaaaaaaattcctgaactagggaccgaaatgattctggagttacttcgaagacactcccagtttattcctagctggcagtgtctcgaacaagggaagtttgtgaatagaacaaaactatgtcgagtaggaataagaaacaaagtgattgaaattatccaactataagttgaacccaaagcacggtacaaaattcaggtgattcatcaaatatccatcggcgattcaccactcaggtgtgttgaaatttagttctctgtaaatattgacaacccgagtaattaaacaagattacaagaacatgccaggaacagagtgagttctattgcaaattcattttttcttctctagaaccaatcaagaagatgatcgtgttacgtgtaaacgtgcctgcatattagctggttaaaaccgttctgttacttgattatgagaccgtaaatgcgtgaagagtggcagcagagtttgcagagaaaactcacatgtcatccatgaacttgactgcggagagcacggcggtgatgaggagccgatgcacgctgtaggagtcgacggcgagggcgagggcgaggcaccgccggccgcggcgcaggagccggtcgaggtagatgtaggcgacgacgtagcacgccgggctgcacccggcgaaccgcgcgatgcgcgccgcgtacgcgcggacggagatgcccggcttggccgtcgcccggaacggcgacgccggcgccgcggcgagctccgcgggcgtcgcggccgcgtcgttgcgccccgcgactcgctccaggatgccggcgagcgcggcgaccacccgcggcatgtcctggtgggcgctctcccccaccagctctgcgccctcggccatggcttcccttgcctcgctcggcaggcgcgcgttggcggcgcacgtgatgtgctgacccggcctcagagctggtggggagcagct
More
|
||||||||||
| CDS seq | atggccgagggcgcagagctggtgggggagagcgcccaccaggacatgccgcgggtggtcgccgcgctcgccggcatcctggagcgagtcgcggggcgcaacgacgcggccgcgacgcccgcggagctcgccgcggcgccggcgtcgccgttccgggcgacggccaagccgggcatctccgtccgcgcgtacgcggcgcgcatcgcgcggttcgccgggtgcagcccggcgtgctacgtcgtcgcctacatctacctcgaccggctcctgcgccgcggccggcggtgcctcgccctcgccctcgccgtcgactcctacagcgtgcatcggctcctcatcaccgccgtgctctccgcagtcaagttcatggatgacatatgctacaacaacgcctacttcgccaaggtcgggggcatcagcctggcggagatgaactacctcgaggtggacttcctgttcggcgtagggttcgacctgaacgtgacgccggagacgttcgccgactactgcgccgtgctccagtccgagatgctctgcgcggcggcgccgccgacgaggctgcactactgctgcctgtccgaggacgatgccggcagcagcagcagcagctcgctgcgtgaagcggccatggaagcaagctag
More
|
||||||||||
| Protein seq | MAEGAELVGESAHQDMPRVVAALAGILERVAGRNDAAATPAELAAAPASPFRATAKPGISVRAYAARIARFAGCSPACYVVAYIYLDRLLRRGRRCLALALAVDSYSVHRLLITAVLSAVKFMDDICYNNAYFAKVGGISLAEMNYLEVDFLFGVGFDLNVTPETFADYCAVLQSEMLCAAAPPTRLHYCCLSEDDAGSSSSSSLREAAMEAS |
||||||||||
| Function | Cyclin-P4-1 [UniProtKB/Swiss-Prot:Q7XC35] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0027080 | OsLima_02g0027080.01 | Chr02 | 28100879 | 28103194 | - | NAM | ||
| CDS seq | atggccgagggcgcagagctggtgggggagagcgcccaccaggacatgccgcgggtggtcgccgcgctcgccggcatcctggagcgagtcgcggggcgcaacgacgcggccgcgacgcccgcggagctcgccgcggcgccggcgtcgccgttccgggcgacggccaagccgggcatctccgtccgcgcgtacgcggcgcgcatcgcgcggttcgccgggtgcagcccggcgtgctacgtcgtcgcctacatctacctcgaccggctcctgcgccgcggccggcggtgcctcgccctcgccctcgccgtcgactcctacagcgtgcatcggctcctcatcaccgccgtgctctccgcagtcaagttcatggatgacatatgctacaacaacgcctacttcgccaaggtcgggggcatcagcctggcggagatgaactacctcgaggtggacttcctgttcggcgtagggttcgacctgaacgtgacgccggagacgttcgccgactactgcgccgtgctccagtccgagatgctctgcgcggcggcgccgccgacgaggctgcactactgctgcctgtccgaggacgatgccggcagcagcagcagcagctcgctgcgtgaagcggccatggaagcaagctag
More
|
|||||||
| Protein seq | MAEGAELVGESAHQDMPRVVAALAGILERVAGRNDAAATPAELAAAPASPFRATAKPGISVRAYAARIARFAGCSPACYVVAYIYLDRLLRRGRRCLALALAVDSYSVHRLLITAVLSAVKFMDDICYNNAYFAKVGGISLAEMNYLEVDFLFGVGFDLNVTPETFADYCAVLQSEMLCAAAPPTRLHYCCLSEDDAGSSSSSSLREAAMEAS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.160531 | 0.118314 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_02g0652000 | RBH | 0.000000 | 0.0 | 0.600319 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os02g43550 | RBH | 0.000000 | 0.0 | 0.150006 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os02g0652000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0027260 | RBH | 0.0 | 2.407460 | 0.581841 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0027370 | RBH | 0.000000 | 1.045704 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0027220 | RBH | 0.0 | 0.0 | 0.645949 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_02g0026810 | RBH | 0.000000 | 0.057548 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_02g0026930 | RBH | 0.0 | 3.362309 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0426900 | RBH | 1.892677 | 3.6360615 | 0.6025485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0026740 | RBH | 0.094212 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0455300 | RBH | 3.3349235 | 2.1082495 | 2.3718445 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_04g0021450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_02g0026760 | RBH | 0.355211 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_02g0027120 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_02g0026940 | RBH | 0.000000 | 0.000000 | 0.557424 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0026650 | RBH | 0.000000 | 1.350211 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G027250 | RBH | 0.0 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0026980 | RBH | 0.0 | 3.479510 | 1.528559 |
