Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsLima_02g0025430 | OGI:02070640 | 10/16 | LIMA | Os127564RS1 | Gramene(+IsoSeq) | Chr02:26657435-26658010 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atatgctcttcaagcacttgaacccacttggattacggcgaggcagatagaagcaggacgaagagaaatgactcgatatgtacgtcgtggtggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgacggaaacacgtatgggttcgggaaagggatccaccgaatattgggtagccgttgttaaaccaggtcgaatactttatgaaatgggcggagtatccgaaactatagctagagcagctatttccatagcggccagcaaaatacccatacgaagtcaatttcttcggttagaaatataaccccccAaaaaaaagtagtattgaaaataaaaaaccaggttcttctttctagaaagacaatatttctttcatctttttgcattgaaatagcaaattgaaatcaaaataatatgattcaacctcagacccttttaaatgtagcagataacagtggagctcgaaaattaatgtgtattcaagtcataggagctgctagtaatcagcgatacgctcgtattggtgatgtaattgggctcttcgatcgtgtagtactgtag
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| CDS seq | atgactcgatatgtacgtcgtggtggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgacggaaacacgtatgggttcgggaaagggatccaccgaatattgggtagccgttgttaaaccaggtcgaatactttatgaaatgggcggagtatccgaaactatagctagagcagctatttccatagcggccagcaaaatacccatacgaaataacagtggagctcgaaaattaatgtgtattcaagtcataggagctgctagtaatcagcgatacgctcgtattggtgatgtaattgggctcttcgatcgtgtagtactgtag |
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| Protein seq | MTRYVRRGGKIWVRIFPDKPVTIRPTETRMGSGKGSTEYWVAVVKPGRILYEMGGVSETIARAAISIAASKIPIRNNSGARKLMCIQVIGAASNQRYARIGDVIGLFDRVVL |
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| Function | 50S ribosomal protein L16, chloroplastic [UniProtKB/Swiss-Prot:P0C442] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsLima_02g0025430 | OsLima_02g0025430.01 | Chr02 | 26657435 | 26658010 | + | NAM | ||
| CDS seq | atgactcgatatgtacgtcgtggtggaaaaatctgggtacgtatatttcccgacaaaccggttacaataagaccgacggaaacacgtatgggttcgggaaagggatccaccgaatattgggtagccgttgttaaaccaggtcgaatactttatgaaatgggcggagtatccgaaactatagctagagcagctatttccatagcggccagcaaaatacccatacgaaataacagtggagctcgaaaattaatgtgtattcaagtcataggagctgctagtaatcagcgatacgctcgtattggtgatgtaattgggctcttcgatcgtgtagtactgtag
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| Protein seq | MTRYVRRGGKIWVRIFPDKPVTIRPTETRMGSGKGSTEYWVAVVKPGRILYEMGGVSETIARAAISIAASKIPIRNNSGARKLMCIQVIGAASNQRYARIGDVIGLFDRVVL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | None |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_02g0025660 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_02g0025810 | RBH | 5.548325 | 0.000000 | 15.168984 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_02g0025630 | RBH | 0.000000 | 0.000000 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0035650 | SBH | 13.238655 | 1.021801 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_04g0007750 | SBH | 414.002625 | 192.582275 | 1194.498901 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_02G0404700 | RBH | 0.0319 | 0.019863 | 0.0272735 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_02g0025230 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_02G0433700 | RBH | 0 | 0 | 0.013934 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_09g0007640 | SBH | 3.821596 | 0.502089 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_09g0007440 | SBH | 27.437029 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_09g0007360 | SBH | 80.257927 | 110.143013 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0021470 | SBH | 9.945112 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_02g0025000 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_02G025630 | RBH | 0.000000 | 0.0 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_02g0025480 | RBH | 0.000000 | 0.000000 | 0.000000 |
